Wall clock time and date at job start Tue Mar 31 2020 23:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47026 * 2 1 4 4 C 1.53002 * 109.47389 * 119.99551 * 2 1 3 5 5 C 1.53000 * 109.47025 * 295.00563 * 4 2 1 6 6 C 1.53009 * 109.46774 * 55.00258 * 4 2 1 7 7 N 1.46894 * 109.46776 * 64.99879 * 6 4 2 8 8 N 1.46496 * 109.47451 * 175.00272 * 4 2 1 9 9 C 1.34773 * 120.00157 * 180.02562 * 8 4 2 10 10 O 1.21597 * 120.00095 * 0.02562 * 9 8 4 11 11 N 1.34779 * 120.00331 * 179.97438 * 9 8 4 12 12 C 1.40130 * 120.00202 * 175.62699 * 11 9 8 13 13 C 1.38695 * 120.07597 * 34.59508 * 12 11 9 14 14 C 1.38195 * 120.02299 * 179.76785 * 13 12 11 15 15 C 1.38545 * 120.17300 * 0.51165 * 14 13 12 16 16 F 1.35100 * 119.92333 * 179.76911 * 15 14 13 17 17 C 1.38341 * 120.15370 * 359.74369 * 15 14 13 18 18 C 1.38743 * 119.97235 * 359.97438 * 17 15 14 19 19 O 1.35780 * 120.08399 * 179.97438 * 18 17 15 20 20 C 1.34810 * 117.00106 * 5.44488 * 19 18 17 21 21 H 1.08001 * 119.99917 * 354.94528 * 20 19 18 22 22 C 1.38633 * 120.00072 * 174.94960 * 20 19 18 23 23 N 1.31571 * 120.00111 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00055 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47452 * 59.99519 * 24 22 20 26 26 H 1.48503 * 109.47279 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46745 * 299.99609 * 24 22 20 28 28 H 1.08995 * 109.47115 * 299.99738 * 1 2 3 29 29 H 1.08999 * 109.46998 * 60.00445 * 1 2 3 30 30 H 1.08999 * 109.46577 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47742 * 239.99914 * 2 1 3 32 32 H 1.08994 * 109.47089 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.46869 * 299.99634 * 3 2 1 34 34 H 1.09004 * 109.46850 * 59.99913 * 3 2 1 35 35 H 1.08997 * 109.47227 * 299.99602 * 5 4 2 36 36 H 1.09002 * 109.46944 * 179.97438 * 5 4 2 37 37 H 1.09001 * 109.47435 * 59.99958 * 5 4 2 38 38 H 1.08993 * 109.46990 * 185.00020 * 6 4 2 39 39 H 1.09002 * 109.46644 * 305.00248 * 6 4 2 40 40 H 1.00902 * 110.99975 * 179.97438 * 7 6 4 41 41 H 1.00895 * 111.00970 * 303.95442 * 7 6 4 42 42 H 0.96998 * 119.99755 * 0.02562 * 8 4 2 43 43 H 0.97001 * 119.99517 * 355.63138 * 11 9 8 44 44 H 1.08002 * 119.98745 * 0.02562 * 13 12 11 45 45 H 1.08002 * 119.91500 * 180.23170 * 14 13 12 46 46 H 1.07993 * 120.01318 * 180.02562 * 17 15 14 47 47 H 0.96998 * 120.00248 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 1.6352 0.0691 2.4953 6 6 1.4300 -2.1229 1.3138 7 7 1.9147 -2.9204 0.1794 8 7 3.5001 -0.8262 1.1907 9 6 4.1730 -1.4289 2.1908 10 8 3.5683 -1.8859 3.1416 11 7 5.5162 -1.5261 2.1367 12 6 6.2235 -2.0699 3.2172 13 6 5.6694 -3.0994 3.9632 14 6 6.3699 -3.6382 5.0257 15 6 7.6220 -3.1454 5.3557 16 9 8.3004 -3.6727 6.3982 17 6 8.1794 -2.1151 4.6198 18 6 7.4841 -1.5736 3.5483 19 8 8.0288 -0.5619 2.8248 20 6 9.2932 -0.2052 3.1270 21 1 9.7970 -0.6612 3.9664 22 6 9.9468 0.7471 2.3603 23 7 9.3333 1.3023 1.3373 24 14 11.6991 1.2409 2.7786 25 1 12.5816 0.0492 2.6995 26 1 12.1677 2.2681 1.8139 27 1 11.7413 1.7976 4.1546 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1299 1.4426 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 2.0698 1.0676 2.4494 36 1 1.9982 -0.4450 3.3853 37 1 0.5489 0.1472 2.5390 38 1 1.7222 -2.6037 2.2472 39 1 0.3435 -2.0486 1.2678 40 1 1.5262 -3.8514 0.1996 41 1 1.7128 -2.4630 -0.6969 42 1 3.9824 -0.4620 0.4320 43 1 5.9933 -1.2195 1.3497 44 1 4.6917 -3.4830 3.7111 45 1 5.9383 -4.4424 5.6031 46 1 9.1558 -1.7331 4.8788 47 1 9.7907 1.9684 0.8006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841145203.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:32 Heat of formation + Delta-G solvation = -93.840999 kcal Electronic energy + Delta-G solvation = -30581.497602 eV Core-core repulsion = 26292.891355 eV Total energy + Delta-G solvation = -4288.606247 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.80167 -41.85438 -40.75529 -39.20050 -37.84957 -35.42556 -34.30421 -34.26656 -34.10459 -31.08361 -30.72431 -29.43039 -28.13079 -27.36277 -25.96869 -24.39415 -23.85791 -23.10480 -21.61949 -20.14722 -19.90578 -19.50790 -19.05094 -18.08327 -17.18697 -17.01011 -16.92159 -16.70608 -16.55459 -16.16277 -15.96330 -15.76553 -15.56610 -15.31274 -15.21858 -14.89705 -14.75178 -14.32677 -13.99745 -13.91534 -13.77149 -13.63012 -13.41963 -13.31441 -13.02999 -12.87444 -12.70029 -12.50398 -12.33230 -12.28413 -12.15945 -11.94495 -11.66384 -11.59423 -11.38752 -11.03913 -10.80444 -10.64423 -9.94482 -9.49993 -9.42171 -8.67278 -8.48612 -6.14800 0.26795 0.50568 1.37557 1.46085 1.51200 1.75655 2.15933 2.24112 2.73746 3.08494 3.19867 3.25434 3.49324 3.62875 3.75183 3.88544 3.98739 4.05562 4.19074 4.33901 4.41271 4.45559 4.55597 4.63985 4.69613 4.78062 4.85093 4.92356 4.98377 5.00679 5.01764 5.05227 5.12927 5.22715 5.25794 5.27282 5.33960 5.38810 5.43823 5.55764 5.67916 5.76657 5.95376 6.04200 6.16019 6.33380 6.68898 6.95599 7.11193 7.62181 7.71754 8.71470 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010777 B = 0.003599 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.528087 B = 7778.532543 C = 9873.742567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.152 4.152 4 C 0.202 3.798 5 C -0.166 4.166 6 C 0.054 3.946 7 N -0.849 5.849 8 N -0.710 5.710 9 C 0.712 3.288 10 O -0.605 6.605 11 N -0.671 5.671 12 C 0.086 3.914 13 C -0.050 4.050 14 C -0.204 4.204 15 C 0.118 3.882 16 F -0.146 7.146 17 C -0.265 4.265 18 C 0.128 3.872 19 O -0.202 6.202 20 C -0.417 4.417 21 H 0.098 0.902 22 C -0.008 4.008 23 N -0.905 5.905 24 Si 1.010 2.990 25 H -0.260 1.260 26 H -0.270 1.270 27 H -0.262 1.262 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.346 0.654 41 H 0.343 0.657 42 H 0.401 0.599 43 H 0.409 0.591 44 H 0.153 0.847 45 H 0.156 0.844 46 H 0.135 0.865 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.371 -3.371 -4.927 17.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 C -0.210 4.210 4 C 0.115 3.885 5 C -0.224 4.224 6 C -0.078 4.078 7 N -0.381 5.381 8 N -0.364 5.364 9 C 0.413 3.587 10 O -0.486 6.486 11 N -0.317 5.317 12 C -0.011 4.011 13 C -0.071 4.071 14 C -0.223 4.223 15 C 0.098 3.902 16 F -0.124 7.124 17 C -0.285 4.285 18 C 0.074 3.926 19 O -0.107 6.107 20 C -0.493 4.493 21 H 0.115 0.885 22 C -0.207 4.207 23 N -0.541 5.541 24 Si 0.830 3.170 25 H -0.184 1.184 26 H -0.194 1.194 27 H -0.187 1.187 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.159 0.841 41 H 0.157 0.843 42 H 0.236 0.764 43 H 0.244 0.756 44 H 0.170 0.830 45 H 0.173 0.827 46 H 0.153 0.847 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.284 -3.341 -4.124 17.127 hybrid contribution 0.780 0.558 -0.453 1.061 sum -15.504 -2.783 -4.577 16.403 Atomic orbital electron populations 1.21940 0.92743 1.02504 1.03063 1.21307 0.97446 0.96150 0.96083 1.21937 1.00676 0.95717 1.02627 1.20306 0.77485 0.94556 0.96107 1.22295 1.02272 0.99836 0.98043 1.22188 0.96931 0.93450 0.95246 1.58514 1.67927 1.06412 1.05228 1.44939 1.07318 1.61394 1.22737 1.15886 0.80664 0.78843 0.83289 1.90755 1.67540 1.54832 1.35432 1.42272 1.05576 1.65065 1.18833 1.16908 0.91229 0.98140 0.94773 1.20851 0.99855 0.92317 0.94070 1.20869 0.93965 1.05402 1.02098 1.17440 0.91684 0.94716 0.86320 1.91420 1.80015 1.85409 1.55601 1.20906 1.03866 1.03072 1.00706 1.19198 0.93161 0.88834 0.91390 1.83916 1.29619 1.43309 1.53906 1.21703 0.87731 1.24252 1.15639 0.88514 1.26351 1.04143 0.95440 0.94812 1.70115 1.39413 1.26903 1.17713 0.84761 0.74902 0.78681 0.78664 1.18441 1.19391 1.18703 0.91991 0.90896 0.91919 0.89667 0.93688 0.91041 0.92356 0.92567 0.93120 0.89863 0.91881 0.92929 0.84125 0.84276 0.76419 0.75614 0.82975 0.82656 0.84748 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.47 71.98 0.61 -1.02 16 2 C -0.09 -1.37 1.97 -10.79 -0.02 -1.39 16 3 C -0.15 -2.51 8.58 71.98 0.62 -1.89 16 4 C 0.20 4.31 0.30 3.61 0.00 4.31 16 5 C -0.17 -3.95 7.67 71.98 0.55 -3.40 16 6 C 0.05 1.12 5.13 86.31 0.44 1.57 16 7 N -0.85 -15.81 9.35 -186.72 -1.74 -17.55 16 8 N -0.71 -19.03 4.56 -437.99 -2.00 -21.02 16 9 C 0.71 25.03 7.83 179.05 1.40 26.43 16 10 O -0.60 -23.35 10.02 -4.02 -0.04 -23.39 16 11 N -0.67 -26.04 5.20 -316.70 -1.65 -27.68 16 12 C 0.09 3.68 6.33 38.22 0.24 3.92 16 13 C -0.05 -1.94 8.69 22.37 0.19 -1.75 16 14 C -0.20 -7.36 10.02 22.33 0.22 -7.13 16 15 C 0.12 4.73 7.29 22.37 0.16 4.90 16 16 F -0.15 -5.48 17.26 44.97 0.78 -4.71 16 17 C -0.26 -11.99 9.14 22.42 0.20 -11.78 16 18 C 0.13 6.19 6.66 22.68 0.15 6.34 16 19 O -0.20 -11.19 9.32 -22.86 -0.21 -11.40 16 20 C -0.42 -23.07 9.49 67.91 0.64 -22.43 16 21 H 0.10 5.04 5.20 -2.91 -0.02 5.02 16 22 C -0.01 -0.42 5.49 84.83 0.47 0.05 16 23 N -0.90 -51.24 13.67 21.61 0.30 -50.95 16 24 Si 1.01 41.20 29.55 68.60 2.03 43.23 16 25 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 26 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 27 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 28 H 0.06 0.72 6.56 -2.39 -0.02 0.70 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.64 6.23 -2.39 -0.01 0.63 16 31 H 0.09 1.18 6.91 -2.39 -0.02 1.17 16 32 H 0.04 0.88 7.18 -2.39 -0.02 0.86 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.06 1.01 6.34 -2.38 -0.02 0.99 16 35 H 0.06 1.37 6.34 -2.39 -0.02 1.36 16 36 H 0.05 1.56 6.17 -2.39 -0.01 1.55 16 37 H 0.08 1.54 6.57 -2.39 -0.02 1.52 16 38 H 0.06 1.80 6.31 -2.39 -0.02 1.78 16 39 H 0.05 0.88 6.06 -2.39 -0.01 0.86 16 40 H 0.35 5.58 9.08 -89.69 -0.81 4.76 16 41 H 0.34 5.05 7.36 -89.70 -0.66 4.39 16 42 H 0.40 9.83 7.67 -92.71 -0.71 9.12 16 43 H 0.41 15.70 8.59 -92.71 -0.80 14.91 16 44 H 0.15 5.70 6.19 -2.91 -0.02 5.68 16 45 H 0.16 4.56 8.06 -2.91 -0.02 4.54 16 46 H 0.13 6.16 5.64 -2.91 -0.02 6.14 16 47 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -65.87 370.37 1.45 -64.42 By element: Atomic # 1 Polarization: 54.22 SS G_CDS: -1.90 Total: 52.33 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 5.89 Total: -3.27 kcal Atomic # 7 Polarization: -112.11 SS G_CDS: -5.09 Total: -117.21 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -0.25 Total: -34.79 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 0.78 Total: -4.71 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -65.87 1.45 -64.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841145203.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.420 kcal (2) G-P(sol) polarization free energy of solvation -65.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds