Wall clock time and date at job start Tue Mar 31 2020 23:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47142 * 2 1 4 4 C 1.52994 * 109.47173 * 300.00063 * 3 2 1 5 5 C 1.53001 * 109.47311 * 299.99841 * 4 3 2 6 6 C 1.53004 * 109.47142 * 180.02562 * 3 2 1 7 7 N 1.46896 * 109.47544 * 185.00319 * 6 3 2 8 8 N 1.46501 * 109.46882 * 60.00210 * 3 2 1 9 9 C 1.34772 * 120.00115 * 60.00082 * 8 3 2 10 10 O 1.21589 * 120.00359 * 359.97438 * 9 8 3 11 11 N 1.34780 * 119.99901 * 180.27335 * 9 8 3 12 12 C 1.40138 * 120.00081 * 175.35154 * 11 9 8 13 13 C 1.38688 * 120.07459 * 34.59721 * 12 11 9 14 14 C 1.38200 * 120.02195 * 179.72486 * 13 12 11 15 15 C 1.38549 * 120.17243 * 0.55031 * 14 13 12 16 16 F 1.35101 * 119.92670 * 179.74446 * 15 14 13 17 17 C 1.38350 * 120.14875 * 359.72481 * 15 14 13 18 18 C 1.38734 * 119.97931 * 0.02562 * 17 15 14 19 19 O 1.35777 * 120.08833 * 180.02562 * 18 17 15 20 20 C 1.34803 * 116.99839 * 5.43667 * 19 18 17 21 21 H 1.08003 * 120.00175 * 354.94414 * 20 19 18 22 22 C 1.38635 * 120.00104 * 174.95430 * 20 19 18 23 23 N 1.31578 * 119.99819 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00339 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47015 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.46901 * 119.99536 * 24 22 20 27 27 H 1.48498 * 109.47335 * 239.99890 * 24 22 20 28 28 H 1.09003 * 109.47164 * 59.99418 * 1 2 3 29 29 H 1.08996 * 109.47458 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46932 * 300.00134 * 1 2 3 31 31 H 1.08993 * 109.46829 * 240.00052 * 2 1 3 32 32 H 1.08996 * 109.46964 * 120.00223 * 2 1 3 33 33 H 1.08993 * 109.47486 * 60.00024 * 4 3 2 34 34 H 1.09010 * 109.46874 * 180.02562 * 4 3 2 35 35 H 1.08996 * 109.47285 * 180.02562 * 5 4 3 36 36 H 1.09007 * 109.47008 * 300.00620 * 5 4 3 37 37 H 1.09001 * 109.46662 * 59.99762 * 5 4 3 38 38 H 1.09006 * 109.46702 * 305.00143 * 6 3 2 39 39 H 1.08996 * 109.46811 * 64.99735 * 6 3 2 40 40 H 1.00903 * 110.99968 * 56.04447 * 7 6 3 41 41 H 1.00892 * 111.00085 * 179.97438 * 7 6 3 42 42 H 0.97005 * 119.99656 * 239.99040 * 8 3 2 43 43 H 0.96998 * 120.00000 * 355.35115 * 11 9 8 44 44 H 1.08002 * 119.98910 * 359.97438 * 13 12 11 45 45 H 1.07996 * 119.91679 * 180.24909 * 14 13 12 46 46 H 1.07999 * 120.00662 * 180.02562 * 17 15 14 47 47 H 0.96996 * 120.00069 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1637 -1.2492 5 6 2.0401 1.4425 -2.4985 6 6 3.5701 1.4425 -0.0006 7 7 4.0599 2.8221 0.1201 8 7 1.5517 2.1330 1.1962 9 6 1.8773 1.6726 2.4203 10 8 2.5760 0.6837 2.5319 11 7 1.4235 2.3047 3.5207 12 6 1.6801 1.7714 4.7911 13 6 2.8750 1.1127 5.0399 14 6 3.1293 0.5922 6.2946 15 6 2.1883 0.7164 7.3039 16 9 2.4399 0.2012 8.5272 17 6 0.9916 1.3671 7.0619 18 6 0.7319 1.8965 5.8061 19 8 -0.4416 2.5360 5.5663 20 6 -1.2634 2.7218 6.6186 21 1 -1.0146 2.2968 7.5798 22 6 -2.4281 3.4583 6.4669 23 7 -2.7311 3.9763 5.2960 24 14 -3.5673 3.7152 7.9249 25 1 -3.0043 3.0350 9.1189 26 1 -3.7001 5.1686 8.1992 27 1 -4.9034 3.1456 7.6155 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8899 33 1 0.4401 2.1638 -1.2492 34 1 1.8938 3.1913 -1.2494 35 1 1.6771 1.9566 -3.3884 36 1 3.1301 1.4425 -2.4984 37 1 1.6767 0.4149 -2.4984 38 1 3.9337 0.8529 0.8410 39 1 3.9330 1.0083 -0.9322 40 1 3.6847 3.2682 0.9438 41 1 5.0684 2.8488 0.1225 42 1 0.9941 2.9218 1.1072 43 1 0.9193 3.1287 3.4335 44 1 3.6086 1.0100 4.2540 45 1 4.0620 0.0832 6.4876 46 1 0.2598 1.4629 7.8504 47 1 -3.5458 4.4919 5.1900 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841145446.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:35 Heat of formation + Delta-G solvation = -76.363600 kcal Electronic energy + Delta-G solvation = -30697.918683 eV Core-core repulsion = 26410.070313 eV Total energy + Delta-G solvation = -4287.848370 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.25133 -40.66703 -39.24964 -37.73344 -36.22316 -34.04531 -33.34496 -32.70538 -32.41267 -30.97654 -29.41224 -28.30571 -26.79485 -25.51522 -24.37048 -22.63033 -22.49274 -21.70323 -20.43149 -19.12309 -18.36255 -18.13953 -17.59778 -16.68367 -16.28077 -15.69958 -15.43032 -15.24517 -15.10447 -15.00001 -14.79800 -14.46844 -14.27959 -13.93447 -13.71940 -13.55783 -13.39412 -13.25775 -12.90529 -12.79911 -12.40361 -12.22303 -12.15355 -11.86238 -11.81546 -11.65791 -11.45197 -11.33629 -11.05288 -10.97307 -10.73306 -10.61930 -10.53608 -10.40013 -9.78432 -9.74952 -9.36477 -8.98924 -8.95592 -8.52458 -7.87574 -7.10185 -6.61712 -4.19427 1.85553 2.12015 2.90018 3.04582 3.07224 3.12406 3.46830 3.83992 4.34973 4.42382 4.46183 4.81044 4.84915 4.86382 4.94926 5.03722 5.11779 5.25436 5.36790 5.42221 5.53800 5.59087 5.63910 5.67952 5.73681 5.80238 5.88045 5.94565 6.03878 6.07407 6.17375 6.21138 6.22939 6.32580 6.48226 6.57403 6.70665 6.76856 6.91347 6.93105 7.07327 7.07877 7.18467 7.31868 7.39454 7.66385 7.82748 8.30189 8.84058 8.89001 9.46198 10.55336 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010863 B = 0.003631 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.830256 B = 7709.730315 C = 9533.853758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.205 3.795 4 C -0.121 4.121 5 C -0.148 4.148 6 C 0.045 3.955 7 N -0.845 5.845 8 N -0.736 5.736 9 C 0.704 3.296 10 O -0.583 6.583 11 N -0.666 5.666 12 C 0.079 3.921 13 C -0.050 4.050 14 C -0.229 4.229 15 C 0.127 3.873 16 F -0.152 7.152 17 C -0.259 4.259 18 C 0.157 3.843 19 O -0.168 6.168 20 C -0.392 4.392 21 H 0.094 0.906 22 C 0.043 3.957 23 N -0.859 5.859 24 Si 0.941 3.059 25 H -0.265 1.265 26 H -0.275 1.275 27 H -0.275 1.275 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.339 0.661 41 H 0.336 0.664 42 H 0.398 0.602 43 H 0.410 0.590 44 H 0.141 0.859 45 H 0.121 0.879 46 H 0.142 0.858 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.364 -2.071 -11.130 14.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.178 4.178 3 C 0.118 3.882 4 C -0.159 4.159 5 C -0.205 4.205 6 C -0.087 4.087 7 N -0.374 5.374 8 N -0.391 5.391 9 C 0.405 3.595 10 O -0.462 6.462 11 N -0.312 5.312 12 C -0.016 4.016 13 C -0.071 4.071 14 C -0.249 4.249 15 C 0.107 3.893 16 F -0.131 7.131 17 C -0.280 4.280 18 C 0.100 3.900 19 O -0.071 6.071 20 C -0.468 4.468 21 H 0.112 0.888 22 C -0.162 4.162 23 N -0.494 5.494 24 Si 0.766 3.234 25 H -0.190 1.190 26 H -0.200 1.200 27 H -0.201 1.201 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.232 0.768 43 H 0.246 0.754 44 H 0.159 0.841 45 H 0.139 0.861 46 H 0.160 0.840 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.298 -2.621 -12.043 14.858 hybrid contribution -0.781 0.434 1.905 2.104 sum 7.517 -2.187 -10.138 12.809 Atomic orbital electron populations 1.21735 0.95567 1.01354 1.01858 1.21999 0.96453 0.95900 1.03460 1.20169 0.92599 0.92061 0.83385 1.21677 1.00604 1.00525 0.93070 1.21810 1.01592 1.00361 0.96764 1.22277 0.94516 0.90164 1.01715 1.58758 1.13140 1.17821 1.47687 1.45233 1.56649 1.33342 1.03880 1.15923 0.80649 0.82606 0.80277 1.90810 1.42586 1.27293 1.85508 1.42249 1.58225 1.27757 1.03005 1.16637 0.93848 1.07499 0.83581 1.20636 0.94611 0.96068 0.95774 1.20480 1.00667 1.10614 0.93181 1.17461 0.94939 0.96999 0.79856 1.91409 1.94545 1.85108 1.42025 1.20847 0.98919 1.09061 0.99126 1.18831 0.86258 0.93137 0.91726 1.83932 1.22416 1.64778 1.35962 1.21397 1.01458 1.34374 0.89571 0.88821 1.25271 0.97059 0.95420 0.98418 1.70018 1.24876 1.31914 1.22556 0.85628 0.79436 0.78598 0.79740 1.18958 1.20013 1.20055 0.92882 0.93137 0.92442 0.91482 0.89422 0.91540 0.90329 0.92739 0.92126 0.92517 0.92824 0.90626 0.84819 0.85224 0.76828 0.75425 0.84097 0.86081 0.84022 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.40 37.16 0.35 -1.47 16 2 C -0.14 -1.70 4.43 -26.73 -0.12 -1.81 16 3 C 0.20 2.29 0.29 -131.82 -0.04 2.25 16 4 C -0.12 -1.15 4.64 -26.73 -0.12 -1.27 16 5 C -0.15 -1.22 9.22 37.16 0.34 -0.88 16 6 C 0.04 0.50 5.23 -3.82 -0.02 0.48 16 7 N -0.85 -8.64 9.07 -10.37 -0.09 -8.74 16 8 N -0.74 -9.23 3.45 -52.42 -0.18 -9.41 16 9 C 0.70 11.34 7.68 -86.92 -0.67 10.68 16 10 O -0.58 -10.57 10.02 5.29 0.05 -10.52 16 11 N -0.67 -11.76 5.20 -14.07 -0.07 -11.83 16 12 C 0.08 1.61 6.33 -83.44 -0.53 1.08 16 13 C -0.05 -0.95 8.70 -39.43 -0.34 -1.29 16 14 C -0.23 -4.23 10.02 -39.48 -0.40 -4.62 16 15 C 0.13 2.54 7.29 -39.43 -0.29 2.25 16 16 F -0.15 -2.92 17.26 2.25 0.04 -2.88 16 17 C -0.26 -5.63 9.14 -39.36 -0.36 -5.99 16 18 C 0.16 3.57 6.66 -38.94 -0.26 3.31 16 19 O -0.17 -4.34 9.32 0.04 0.00 -4.33 16 20 C -0.39 -10.26 9.49 30.88 0.29 -9.97 16 21 H 0.09 2.32 5.20 -52.48 -0.27 2.05 16 22 C 0.04 1.11 5.49 -17.51 -0.10 1.02 16 23 N -0.86 -23.22 13.67 55.48 0.76 -22.46 16 24 Si 0.94 19.60 29.55 -169.99 -5.02 14.58 16 25 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 26 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 27 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 28 H 0.05 0.56 6.43 -51.93 -0.33 0.23 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.84 7.60 -51.93 -0.39 0.44 16 31 H 0.07 0.70 6.43 -51.93 -0.33 0.37 16 32 H 0.09 1.34 6.16 -51.93 -0.32 1.02 16 33 H 0.07 0.63 6.43 -51.93 -0.33 0.30 16 34 H 0.08 0.78 7.75 -51.92 -0.40 0.37 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.51 6.32 -51.93 -0.33 0.18 16 37 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16 38 H 0.05 0.74 6.32 -51.93 -0.33 0.41 16 39 H 0.08 0.76 6.17 -51.93 -0.32 0.44 16 40 H 0.34 3.79 8.01 -39.29 -0.31 3.47 16 41 H 0.34 3.03 9.08 -39.30 -0.36 2.68 16 42 H 0.40 4.50 8.49 -40.82 -0.35 4.15 16 43 H 0.41 7.02 8.59 -40.82 -0.35 6.66 16 44 H 0.14 2.56 6.19 -52.49 -0.32 2.23 16 45 H 0.12 1.94 8.06 -52.49 -0.42 1.51 16 46 H 0.14 3.10 5.64 -52.49 -0.30 2.80 16 47 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 372.76 15.07 5.62 5.62 Total: -1.00 -28.33 372.76 -7.25 -35.58 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: -6.09 Total: 20.61 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -2.25 Total: -6.23 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: 0.41 Total: -52.43 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: 0.05 Total: -14.85 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.33 -7.25 -35.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841145446.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.780 kcal (2) G-P(sol) polarization free energy of solvation -28.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds