Wall clock time and date at job start Tue Mar 31 2020 23:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47142 * 2 1 4 4 C 1.52994 * 109.47173 * 300.00063 * 3 2 1 5 5 C 1.53001 * 109.47311 * 299.99841 * 4 3 2 6 6 C 1.53004 * 109.47142 * 180.02562 * 3 2 1 7 7 N 1.46896 * 109.47544 * 185.00319 * 6 3 2 8 8 N 1.46501 * 109.46882 * 60.00210 * 3 2 1 9 9 C 1.34772 * 120.00115 * 60.00082 * 8 3 2 10 10 O 1.21589 * 120.00359 * 359.97438 * 9 8 3 11 11 N 1.34780 * 119.99901 * 180.27335 * 9 8 3 12 12 C 1.40138 * 120.00081 * 175.35154 * 11 9 8 13 13 C 1.38688 * 120.07459 * 34.59721 * 12 11 9 14 14 C 1.38200 * 120.02195 * 179.72486 * 13 12 11 15 15 C 1.38549 * 120.17243 * 0.55031 * 14 13 12 16 16 F 1.35101 * 119.92670 * 179.74446 * 15 14 13 17 17 C 1.38350 * 120.14875 * 359.72481 * 15 14 13 18 18 C 1.38734 * 119.97931 * 0.02562 * 17 15 14 19 19 O 1.35777 * 120.08833 * 180.02562 * 18 17 15 20 20 C 1.34803 * 116.99839 * 5.43667 * 19 18 17 21 21 H 1.08003 * 120.00175 * 354.94414 * 20 19 18 22 22 C 1.38635 * 120.00104 * 174.95430 * 20 19 18 23 23 N 1.31578 * 119.99819 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00339 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47015 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.46901 * 119.99536 * 24 22 20 27 27 H 1.48498 * 109.47335 * 239.99890 * 24 22 20 28 28 H 1.09003 * 109.47164 * 59.99418 * 1 2 3 29 29 H 1.08996 * 109.47458 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46932 * 300.00134 * 1 2 3 31 31 H 1.08993 * 109.46829 * 240.00052 * 2 1 3 32 32 H 1.08996 * 109.46964 * 120.00223 * 2 1 3 33 33 H 1.08993 * 109.47486 * 60.00024 * 4 3 2 34 34 H 1.09010 * 109.46874 * 180.02562 * 4 3 2 35 35 H 1.08996 * 109.47285 * 180.02562 * 5 4 3 36 36 H 1.09007 * 109.47008 * 300.00620 * 5 4 3 37 37 H 1.09001 * 109.46662 * 59.99762 * 5 4 3 38 38 H 1.09006 * 109.46702 * 305.00143 * 6 3 2 39 39 H 1.08996 * 109.46811 * 64.99735 * 6 3 2 40 40 H 1.00903 * 110.99968 * 56.04447 * 7 6 3 41 41 H 1.00892 * 111.00085 * 179.97438 * 7 6 3 42 42 H 0.97005 * 119.99656 * 239.99040 * 8 3 2 43 43 H 0.96998 * 120.00000 * 355.35115 * 11 9 8 44 44 H 1.08002 * 119.98910 * 359.97438 * 13 12 11 45 45 H 1.07996 * 119.91679 * 180.24909 * 14 13 12 46 46 H 1.07999 * 120.00662 * 180.02562 * 17 15 14 47 47 H 0.96996 * 120.00069 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1637 -1.2492 5 6 2.0401 1.4425 -2.4985 6 6 3.5701 1.4425 -0.0006 7 7 4.0599 2.8221 0.1201 8 7 1.5517 2.1330 1.1962 9 6 1.8773 1.6726 2.4203 10 8 2.5760 0.6837 2.5319 11 7 1.4235 2.3047 3.5207 12 6 1.6801 1.7714 4.7911 13 6 2.8750 1.1127 5.0399 14 6 3.1293 0.5922 6.2946 15 6 2.1883 0.7164 7.3039 16 9 2.4399 0.2012 8.5272 17 6 0.9916 1.3671 7.0619 18 6 0.7319 1.8965 5.8061 19 8 -0.4416 2.5360 5.5663 20 6 -1.2634 2.7218 6.6186 21 1 -1.0146 2.2968 7.5798 22 6 -2.4281 3.4583 6.4669 23 7 -2.7311 3.9763 5.2960 24 14 -3.5673 3.7152 7.9249 25 1 -3.0043 3.0350 9.1189 26 1 -3.7001 5.1686 8.1992 27 1 -4.9034 3.1456 7.6155 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8899 33 1 0.4401 2.1638 -1.2492 34 1 1.8938 3.1913 -1.2494 35 1 1.6771 1.9566 -3.3884 36 1 3.1301 1.4425 -2.4984 37 1 1.6767 0.4149 -2.4984 38 1 3.9337 0.8529 0.8410 39 1 3.9330 1.0083 -0.9322 40 1 3.6847 3.2682 0.9438 41 1 5.0684 2.8488 0.1225 42 1 0.9941 2.9218 1.1072 43 1 0.9193 3.1287 3.4335 44 1 3.6086 1.0100 4.2540 45 1 4.0620 0.0832 6.4876 46 1 0.2598 1.4629 7.8504 47 1 -3.5458 4.4919 5.1900 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841145446.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:35 Heat of formation + Delta-G solvation = -95.217111 kcal Electronic energy + Delta-G solvation = -30698.736232 eV Core-core repulsion = 26410.070313 eV Total energy + Delta-G solvation = -4288.665920 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.82946 -41.96480 -40.77529 -39.04730 -37.81535 -35.49158 -34.30905 -34.24585 -33.81702 -31.86348 -31.06801 -29.81944 -27.81846 -27.36545 -25.27779 -24.10094 -23.54109 -23.26951 -21.78609 -20.23619 -20.09703 -19.53743 -19.13820 -18.13311 -17.31928 -17.05645 -16.88502 -16.71892 -16.54929 -16.16472 -16.02420 -15.95101 -15.49415 -15.41185 -15.24798 -15.09771 -14.89001 -14.55602 -14.04076 -13.78796 -13.73900 -13.60073 -13.42087 -13.09935 -13.01874 -12.75473 -12.67326 -12.59652 -12.34841 -12.30471 -12.13853 -12.02237 -11.63556 -11.48749 -11.33901 -11.16587 -10.83554 -10.73569 -10.07416 -9.54834 -9.44101 -8.72498 -8.51091 -6.17016 0.22786 0.47159 1.36877 1.42253 1.52565 1.63841 2.11773 2.14396 2.69632 3.05904 3.15545 3.20649 3.46249 3.55617 3.92761 3.94902 3.98438 4.13961 4.16620 4.33624 4.37172 4.54296 4.59295 4.60812 4.68015 4.73415 4.81658 4.91137 4.95402 4.97535 5.03359 5.10109 5.23190 5.24981 5.29485 5.30773 5.31740 5.35848 5.44069 5.55048 5.62600 5.73561 5.93235 5.98334 6.10190 6.20590 6.54989 6.93676 7.02027 7.54380 7.64955 8.69311 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010863 B = 0.003631 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.830256 B = 7709.730315 C = 9533.853758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.202 3.798 4 C -0.114 4.114 5 C -0.145 4.145 6 C 0.051 3.949 7 N -0.839 5.839 8 N -0.721 5.721 9 C 0.705 3.295 10 O -0.601 6.601 11 N -0.669 5.669 12 C 0.084 3.916 13 C -0.050 4.050 14 C -0.204 4.204 15 C 0.120 3.880 16 F -0.146 7.146 17 C -0.265 4.265 18 C 0.130 3.870 19 O -0.201 6.201 20 C -0.415 4.415 21 H 0.097 0.903 22 C -0.007 4.007 23 N -0.904 5.904 24 Si 1.010 2.990 25 H -0.258 1.258 26 H -0.267 1.267 27 H -0.270 1.270 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.028 0.972 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.026 0.974 39 H 0.091 0.909 40 H 0.334 0.666 41 H 0.345 0.655 42 H 0.405 0.595 43 H 0.411 0.589 44 H 0.154 0.846 45 H 0.156 0.844 46 H 0.134 0.866 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.475 -2.436 -12.051 15.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.117 3.883 4 C -0.152 4.152 5 C -0.203 4.203 6 C -0.080 4.080 7 N -0.368 5.368 8 N -0.376 5.376 9 C 0.406 3.594 10 O -0.481 6.481 11 N -0.316 5.316 12 C -0.012 4.012 13 C -0.070 4.070 14 C -0.224 4.224 15 C 0.100 3.900 16 F -0.125 7.125 17 C -0.286 4.286 18 C 0.076 3.924 19 O -0.107 6.107 20 C -0.491 4.491 21 H 0.115 0.885 22 C -0.207 4.207 23 N -0.541 5.541 24 Si 0.830 3.170 25 H -0.181 1.181 26 H -0.191 1.191 27 H -0.195 1.195 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.045 0.955 39 H 0.110 0.890 40 H 0.146 0.854 41 H 0.157 0.843 42 H 0.240 0.760 43 H 0.246 0.754 44 H 0.171 0.829 45 H 0.173 0.827 46 H 0.152 0.848 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.452 -2.996 -12.998 16.348 hybrid contribution -0.889 0.428 2.108 2.327 sum 8.563 -2.568 -10.890 14.090 Atomic orbital electron populations 1.21701 0.95682 1.01358 1.01378 1.21949 0.96233 0.96325 1.02925 1.20357 0.92888 0.91742 0.83360 1.21639 1.00666 1.00351 0.92511 1.21802 1.01650 1.00504 0.96308 1.22193 0.94214 0.90283 1.01359 1.58770 1.13840 1.16993 1.47195 1.45216 1.55916 1.33269 1.03155 1.15993 0.80358 0.82302 0.80722 1.90797 1.43447 1.28009 1.85861 1.42288 1.58530 1.27933 1.02799 1.16881 0.93621 1.06595 0.84124 1.20834 0.94187 0.95650 0.96355 1.20873 1.01101 1.08342 0.92100 1.17463 0.94697 0.97311 0.80573 1.91424 1.94416 1.84952 1.41668 1.20915 0.99661 1.09286 0.98742 1.19194 0.86363 0.93872 0.93007 1.83911 1.23714 1.66797 1.36239 1.21763 1.02228 1.35098 0.90044 0.88523 1.26339 0.98265 0.94871 1.01246 1.70121 1.25823 1.33452 1.24655 0.84639 0.77156 0.78810 0.76387 1.18136 1.19149 1.19491 0.90850 0.92990 0.95295 0.89262 0.92638 0.91367 0.90389 0.91585 0.92009 0.92130 0.95528 0.89041 0.85433 0.84278 0.75975 0.75352 0.82876 0.82667 0.84842 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 9.40 71.98 0.68 -2.75 16 2 C -0.14 -3.16 4.43 30.60 0.14 -3.03 16 3 C 0.20 4.28 0.29 3.60 0.00 4.28 16 4 C -0.11 -1.91 4.64 30.59 0.14 -1.77 16 5 C -0.15 -1.98 9.22 71.98 0.66 -1.32 16 6 C 0.05 1.07 5.23 86.31 0.45 1.53 16 7 N -0.84 -15.86 9.07 -186.72 -1.69 -17.55 16 8 N -0.72 -17.84 3.45 -438.01 -1.51 -19.36 16 9 C 0.71 22.78 7.68 179.05 1.37 24.15 16 10 O -0.60 -21.69 10.02 -4.00 -0.04 -21.73 16 11 N -0.67 -24.07 5.20 -316.70 -1.65 -25.72 16 12 C 0.08 3.42 6.33 38.22 0.24 3.66 16 13 C -0.05 -1.81 8.70 22.37 0.19 -1.62 16 14 C -0.20 -7.08 10.02 22.33 0.22 -6.86 16 15 C 0.12 4.64 7.29 22.37 0.16 4.80 16 16 F -0.15 -5.37 17.26 44.97 0.78 -4.59 16 17 C -0.27 -11.71 9.14 22.42 0.20 -11.51 16 18 C 0.13 6.07 6.66 22.68 0.15 6.22 16 19 O -0.20 -10.86 9.32 -22.76 -0.21 -11.08 16 20 C -0.42 -22.56 9.49 67.91 0.64 -21.91 16 21 H 0.10 4.97 5.20 -2.91 -0.02 4.96 16 22 C -0.01 -0.39 5.49 84.83 0.47 0.07 16 23 N -0.90 -50.47 13.67 21.61 0.30 -50.18 16 24 Si 1.01 40.74 29.55 68.60 2.03 42.77 16 25 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 26 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 27 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 28 H 0.07 1.43 6.43 -2.39 -0.02 1.42 16 29 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.03 0.84 7.60 -2.38 -0.02 0.82 16 31 H 0.09 1.68 6.43 -2.39 -0.02 1.66 16 32 H 0.05 1.69 6.16 -2.39 -0.01 1.67 16 33 H 0.07 1.15 6.43 -2.39 -0.02 1.13 16 34 H 0.08 1.36 7.75 -2.38 -0.02 1.35 16 35 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.06 0.84 6.32 -2.38 -0.02 0.83 16 37 H 0.06 0.79 6.43 -2.39 -0.02 0.77 16 38 H 0.03 0.71 6.32 -2.38 -0.02 0.70 16 39 H 0.09 1.64 6.17 -2.39 -0.01 1.62 16 40 H 0.33 7.07 8.01 -89.69 -0.72 6.35 16 41 H 0.34 5.63 9.08 -89.70 -0.81 4.82 16 42 H 0.40 9.03 8.49 -92.70 -0.79 8.24 16 43 H 0.41 14.59 8.59 -92.71 -0.80 13.79 16 44 H 0.15 5.30 6.19 -2.91 -0.02 5.28 16 45 H 0.16 4.35 8.06 -2.91 -0.02 4.33 16 46 H 0.13 6.02 5.64 -2.91 -0.02 6.00 16 47 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -62.77 372.76 1.69 -61.07 By element: Atomic # 1 Polarization: 54.45 SS G_CDS: -2.04 Total: 52.41 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: 5.73 Total: -6.05 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -4.56 Total: -112.80 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.25 Total: -32.81 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.78 Total: -4.59 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Total: -62.77 1.69 -61.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841145446.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.143 kcal (2) G-P(sol) polarization free energy of solvation -62.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds