Wall clock time and date at job start Tue Mar 31 2020 23:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47265 * 2 1 4 4 N 1.46901 * 109.47031 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47262 * 300.00337 * 3 2 1 6 6 C 1.52995 * 109.47290 * 299.99958 * 5 3 2 7 7 C 1.53004 * 109.46939 * 60.00377 * 3 2 1 8 8 N 1.46501 * 109.47091 * 64.99885 * 7 3 2 9 9 C 1.34773 * 119.99775 * 180.02562 * 8 7 3 10 10 O 1.21589 * 120.00057 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99775 * 179.97438 * 9 8 7 12 12 C 1.40135 * 119.99664 * 185.65910 * 11 9 8 13 13 C 1.38693 * 120.07546 * 34.00107 * 12 11 9 14 14 C 1.38200 * 120.02177 * 179.97438 * 13 12 11 15 15 C 1.38549 * 120.17167 * 359.97438 * 14 13 12 16 16 F 1.35100 * 119.92325 * 180.02562 * 15 14 13 17 17 C 1.38346 * 120.15396 * 0.04633 * 15 14 13 18 18 C 1.38738 * 119.97554 * 359.92684 * 17 15 14 19 19 O 1.35779 * 120.08566 * 180.31900 * 18 17 15 20 20 C 1.34807 * 117.00182 * 354.13304 * 19 18 17 21 21 H 1.07999 * 119.99676 * 354.47718 * 20 19 18 22 22 C 1.38630 * 120.00023 * 174.47641 * 20 19 18 23 23 N 1.31574 * 119.99975 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00138 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46864 * 59.99843 * 24 22 20 26 26 H 1.48500 * 109.47313 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.47176 * 300.00177 * 24 22 20 28 28 H 1.08994 * 109.47115 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46508 * 299.99849 * 1 2 3 30 30 H 1.09000 * 109.47092 * 59.99384 * 1 2 3 31 31 H 1.09004 * 109.46660 * 240.00049 * 2 1 3 32 32 H 1.09000 * 109.47092 * 120.00615 * 2 1 3 33 33 H 1.00896 * 111.00201 * 56.04879 * 4 3 2 34 34 H 1.00904 * 110.99724 * 180.02562 * 4 3 2 35 35 H 1.09004 * 109.46904 * 60.00097 * 5 3 2 36 36 H 1.09003 * 109.47102 * 179.97438 * 5 3 2 37 37 H 1.08994 * 109.47161 * 59.99796 * 6 5 3 38 38 H 1.09000 * 109.47147 * 180.02562 * 6 5 3 39 39 H 1.09008 * 109.46993 * 300.00326 * 6 5 3 40 40 H 1.09000 * 109.46998 * 305.00101 * 7 3 2 41 41 H 1.08997 * 109.46841 * 185.00072 * 7 3 2 42 42 H 0.96999 * 119.99611 * 359.97438 * 8 7 3 43 43 H 0.96998 * 120.00068 * 5.66725 * 11 9 8 44 44 H 1.07994 * 119.99108 * 359.97268 * 13 12 11 45 45 H 1.07993 * 119.91546 * 180.02562 * 14 13 12 46 46 H 1.07993 * 120.01474 * 180.02562 * 17 15 14 47 47 H 0.97004 * 120.00199 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5091 1.4424 -0.0006 5 6 1.5300 2.1638 -1.2492 6 6 2.0399 1.4426 -2.4985 7 6 1.5301 2.1637 1.2493 8 7 2.1143 1.5460 2.4424 9 6 1.8055 2.0191 3.6660 10 8 1.0416 2.9582 3.7797 11 7 2.3425 1.4505 4.7637 12 6 1.9318 1.8628 6.0385 13 6 0.6189 2.2551 6.2527 14 6 0.2150 2.6610 7.5104 15 6 1.1186 2.6770 8.5606 16 9 0.7182 3.0743 9.7882 17 6 2.4301 2.2876 8.3549 18 6 2.8422 1.8784 7.0949 19 8 4.1272 1.4895 6.8920 20 6 4.9820 1.6389 7.9237 21 1 4.6568 2.1333 8.8271 22 6 6.2784 1.1579 7.8249 23 7 6.6744 0.5551 6.7244 24 14 7.4627 1.3642 9.2546 25 1 6.9160 0.6786 10.4531 26 1 8.7757 0.7682 8.8998 27 1 7.6377 2.8095 9.5479 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.8704 0.9164 -0.7822 34 1 3.8707 2.3844 -0.0002 35 1 0.4400 2.1638 -1.2491 36 1 1.8930 3.1916 -1.2489 37 1 1.6766 0.4150 -2.4985 38 1 1.6769 1.9568 -3.3884 39 1 3.1300 1.4425 -2.4985 40 1 0.4438 2.0867 1.2953 41 1 1.8185 3.2139 1.2057 42 1 2.7228 0.7960 2.3517 43 1 3.0133 0.7560 4.6712 44 1 -0.0880 2.2434 5.4363 45 1 -0.8079 2.9658 7.6754 46 1 3.1324 2.3005 9.1751 47 1 7.5816 0.2189 6.6551 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841147184.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:27 Heat of formation + Delta-G solvation = -82.071047 kcal Electronic energy + Delta-G solvation = -29775.278871 eV Core-core repulsion = 25487.183007 eV Total energy + Delta-G solvation = -4288.095864 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.19182 -40.26326 -39.26842 -38.34124 -36.31175 -33.91586 -33.87864 -32.35674 -31.93909 -30.96242 -29.38159 -28.61319 -27.15740 -25.44485 -24.20759 -23.66467 -22.29689 -21.51843 -20.28148 -19.05702 -18.27773 -18.07396 -17.56981 -16.69059 -16.35550 -15.58078 -15.50319 -15.38202 -15.19758 -15.05100 -14.89941 -14.49280 -14.29501 -14.21314 -13.87418 -13.52046 -13.45068 -13.28970 -13.14872 -12.78526 -12.51397 -12.28460 -12.18013 -12.06823 -11.96575 -11.69296 -11.58269 -11.32558 -11.22747 -10.97330 -10.90812 -10.67752 -10.59238 -10.52560 -9.81758 -9.72530 -9.40502 -8.93018 -8.91058 -8.76530 -7.81270 -7.00405 -6.55123 -4.12590 1.92164 2.18540 3.03663 3.10841 3.11234 3.13691 3.58884 3.89177 4.18559 4.35817 4.42352 4.54101 4.60386 4.72104 4.85180 4.93144 5.00582 5.04842 5.15045 5.17934 5.32682 5.35479 5.39950 5.56120 5.58608 5.62451 5.69342 5.78666 5.80284 5.84540 5.87806 6.02610 6.09451 6.15480 6.29713 6.59812 6.70368 6.77304 6.95288 6.97924 6.98967 7.14251 7.22676 7.24980 7.44702 7.72980 7.88965 8.41994 8.90331 8.99687 9.53073 10.61836 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010808 B = 0.003067 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.098707 B = 9127.281113 C =11277.164824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.113 4.113 3 C 0.108 3.892 4 N -0.837 5.837 5 C -0.153 4.153 6 C -0.155 4.155 7 C 0.153 3.847 8 N -0.732 5.732 9 C 0.702 3.298 10 O -0.591 6.591 11 N -0.666 5.666 12 C 0.085 3.915 13 C -0.051 4.051 14 C -0.227 4.227 15 C 0.125 3.875 16 F -0.152 7.152 17 C -0.257 4.257 18 C 0.156 3.844 19 O -0.168 6.168 20 C -0.392 4.392 21 H 0.093 0.907 22 C 0.043 3.957 23 N -0.859 5.859 24 Si 0.941 3.059 25 H -0.269 1.269 26 H -0.277 1.277 27 H -0.269 1.269 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.342 0.658 34 H 0.345 0.655 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.404 0.596 43 H 0.411 0.589 44 H 0.136 0.864 45 H 0.122 0.878 46 H 0.142 0.858 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.146 -1.488 -15.312 17.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.151 4.151 3 C 0.014 3.986 4 N -0.368 5.368 5 C -0.193 4.193 6 C -0.212 4.212 7 C 0.028 3.972 8 N -0.388 5.388 9 C 0.403 3.597 10 O -0.470 6.470 11 N -0.313 5.313 12 C -0.010 4.010 13 C -0.072 4.072 14 C -0.247 4.247 15 C 0.106 3.894 16 F -0.131 7.131 17 C -0.278 4.278 18 C 0.100 3.900 19 O -0.071 6.071 20 C -0.467 4.467 21 H 0.110 0.890 22 C -0.162 4.162 23 N -0.493 5.493 24 Si 0.766 3.234 25 H -0.194 1.194 26 H -0.202 1.202 27 H -0.194 1.194 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.240 0.760 43 H 0.247 0.753 44 H 0.153 0.847 45 H 0.140 0.860 46 H 0.160 0.840 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.542 -1.231 -14.811 17.142 hybrid contribution 1.171 0.112 -0.037 1.177 sum -7.371 -1.119 -14.848 16.614 Atomic orbital electron populations 1.21912 0.95411 1.01920 1.02263 1.21546 0.95974 0.94859 1.02686 1.21089 0.88384 0.95836 0.93259 1.58809 1.05876 1.20624 1.51445 1.22291 1.02337 0.99645 0.95049 1.21827 1.00984 1.01029 0.97371 1.21164 0.97694 0.96216 0.82127 1.44842 1.51984 1.38348 1.03637 1.15908 0.81276 0.82112 0.80448 1.90885 1.40563 1.29794 1.85757 1.42214 1.44624 1.41715 1.02743 1.16618 0.91962 1.09826 0.82598 1.20477 0.93228 0.97396 0.96129 1.20438 0.99501 1.12353 0.92411 1.17434 0.93099 0.99368 0.79537 1.91404 1.91315 1.88666 1.41736 1.20842 0.95533 1.12821 0.98649 1.18820 0.85596 0.94155 0.91462 1.83941 1.12825 1.71272 1.39042 1.21279 0.91150 1.38957 0.95360 0.88978 1.25265 0.96847 0.95719 0.98358 1.70008 1.18745 1.34921 1.25635 0.85768 0.78820 0.79092 0.79759 1.19393 1.20224 1.19410 0.92593 0.91935 0.92521 0.91680 0.90969 0.84408 0.84177 0.90769 0.91734 0.92034 0.92573 0.92846 0.91047 0.92202 0.76007 0.75318 0.84660 0.86037 0.84029 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.22 37.16 0.34 -0.87 16 2 C -0.11 -0.90 4.77 -26.73 -0.13 -1.02 16 3 C 0.11 0.88 0.41 -131.60 -0.05 0.83 16 4 N -0.84 -6.92 8.21 0.74 0.01 -6.91 16 5 C -0.15 -1.05 4.79 -26.73 -0.13 -1.18 16 6 C -0.15 -0.89 9.22 37.15 0.34 -0.55 16 7 C 0.15 1.75 4.51 -4.04 -0.02 1.73 16 8 N -0.73 -9.99 5.12 -65.22 -0.33 -10.32 16 9 C 0.70 12.64 8.29 -86.91 -0.72 11.92 16 10 O -0.59 -12.30 14.09 5.29 0.07 -12.22 16 11 N -0.67 -12.74 5.21 -14.07 -0.07 -12.81 16 12 C 0.09 1.82 6.29 -83.44 -0.52 1.29 16 13 C -0.05 -1.02 8.65 -39.43 -0.34 -1.36 16 14 C -0.23 -4.33 10.02 -39.48 -0.40 -4.72 16 15 C 0.13 2.57 7.29 -39.43 -0.29 2.28 16 16 F -0.15 -2.98 17.26 2.25 0.04 -2.94 16 17 C -0.26 -5.76 9.11 -39.36 -0.36 -6.11 16 18 C 0.16 3.68 6.66 -38.94 -0.26 3.42 16 19 O -0.17 -4.47 9.30 0.02 0.00 -4.47 16 20 C -0.39 -10.50 9.44 30.88 0.29 -10.21 16 21 H 0.09 2.33 5.30 -52.49 -0.28 2.05 16 22 C 0.04 1.13 5.49 -17.52 -0.10 1.04 16 23 N -0.86 -23.72 13.67 55.48 0.76 -22.96 16 24 Si 0.94 19.98 29.55 -169.99 -5.02 14.95 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 26 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 27 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.56 6.32 -51.93 -0.33 0.24 16 30 H 0.06 0.38 6.43 -51.93 -0.33 0.05 16 31 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16 32 H 0.07 0.67 7.18 -51.93 -0.37 0.29 16 33 H 0.34 2.35 7.31 -39.29 -0.29 2.06 16 34 H 0.34 2.88 9.00 -39.29 -0.35 2.53 16 35 H 0.07 0.51 6.43 -51.93 -0.33 0.17 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.35 6.43 -51.93 -0.33 0.01 16 38 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.05 0.29 6.76 -51.92 -0.35 -0.06 16 40 H 0.07 0.83 6.17 -51.93 -0.32 0.51 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.40 5.12 7.34 -40.82 -0.30 4.82 16 43 H 0.41 7.58 8.57 -40.82 -0.35 7.23 16 44 H 0.14 2.59 6.47 -52.49 -0.34 2.25 16 45 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 46 H 0.14 3.15 5.71 -52.49 -0.30 2.85 16 47 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 378.70 15.07 5.71 5.71 Total: -1.00 -30.31 378.70 -7.34 -37.65 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: -6.16 Total: 17.84 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -2.33 Total: -3.51 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 0.36 Total: -53.01 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.07 Total: -16.69 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.04 Total: -2.94 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.31 -7.34 -37.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841147184.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.416 kcal (2) G-P(sol) polarization free energy of solvation -30.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds