Wall clock time and date at job start Tue Mar 31 2020 23:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47265 * 2 1 4 4 N 1.46901 * 109.47031 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47262 * 300.00337 * 3 2 1 6 6 C 1.52995 * 109.47290 * 299.99958 * 5 3 2 7 7 C 1.53004 * 109.46939 * 60.00377 * 3 2 1 8 8 N 1.46501 * 109.47091 * 64.99885 * 7 3 2 9 9 C 1.34773 * 119.99775 * 180.02562 * 8 7 3 10 10 O 1.21589 * 120.00057 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99775 * 179.97438 * 9 8 7 12 12 C 1.40135 * 119.99664 * 185.65910 * 11 9 8 13 13 C 1.38693 * 120.07546 * 34.00107 * 12 11 9 14 14 C 1.38200 * 120.02177 * 179.97438 * 13 12 11 15 15 C 1.38549 * 120.17167 * 359.97438 * 14 13 12 16 16 F 1.35100 * 119.92325 * 180.02562 * 15 14 13 17 17 C 1.38346 * 120.15396 * 0.04633 * 15 14 13 18 18 C 1.38738 * 119.97554 * 359.92684 * 17 15 14 19 19 O 1.35779 * 120.08566 * 180.31900 * 18 17 15 20 20 C 1.34807 * 117.00182 * 354.13304 * 19 18 17 21 21 H 1.07999 * 119.99676 * 354.47718 * 20 19 18 22 22 C 1.38630 * 120.00023 * 174.47641 * 20 19 18 23 23 N 1.31574 * 119.99975 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00138 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46864 * 59.99843 * 24 22 20 26 26 H 1.48500 * 109.47313 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.47176 * 300.00177 * 24 22 20 28 28 H 1.08994 * 109.47115 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46508 * 299.99849 * 1 2 3 30 30 H 1.09000 * 109.47092 * 59.99384 * 1 2 3 31 31 H 1.09004 * 109.46660 * 240.00049 * 2 1 3 32 32 H 1.09000 * 109.47092 * 120.00615 * 2 1 3 33 33 H 1.00896 * 111.00201 * 56.04879 * 4 3 2 34 34 H 1.00904 * 110.99724 * 180.02562 * 4 3 2 35 35 H 1.09004 * 109.46904 * 60.00097 * 5 3 2 36 36 H 1.09003 * 109.47102 * 179.97438 * 5 3 2 37 37 H 1.08994 * 109.47161 * 59.99796 * 6 5 3 38 38 H 1.09000 * 109.47147 * 180.02562 * 6 5 3 39 39 H 1.09008 * 109.46993 * 300.00326 * 6 5 3 40 40 H 1.09000 * 109.46998 * 305.00101 * 7 3 2 41 41 H 1.08997 * 109.46841 * 185.00072 * 7 3 2 42 42 H 0.96999 * 119.99611 * 359.97438 * 8 7 3 43 43 H 0.96998 * 120.00068 * 5.66725 * 11 9 8 44 44 H 1.07994 * 119.99108 * 359.97268 * 13 12 11 45 45 H 1.07993 * 119.91546 * 180.02562 * 14 13 12 46 46 H 1.07993 * 120.01474 * 180.02562 * 17 15 14 47 47 H 0.97004 * 120.00199 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5091 1.4424 -0.0006 5 6 1.5300 2.1638 -1.2492 6 6 2.0399 1.4426 -2.4985 7 6 1.5301 2.1637 1.2493 8 7 2.1143 1.5460 2.4424 9 6 1.8055 2.0191 3.6660 10 8 1.0416 2.9582 3.7797 11 7 2.3425 1.4505 4.7637 12 6 1.9318 1.8628 6.0385 13 6 0.6189 2.2551 6.2527 14 6 0.2150 2.6610 7.5104 15 6 1.1186 2.6770 8.5606 16 9 0.7182 3.0743 9.7882 17 6 2.4301 2.2876 8.3549 18 6 2.8422 1.8784 7.0949 19 8 4.1272 1.4895 6.8920 20 6 4.9820 1.6389 7.9237 21 1 4.6568 2.1333 8.8271 22 6 6.2784 1.1579 7.8249 23 7 6.6744 0.5551 6.7244 24 14 7.4627 1.3642 9.2546 25 1 6.9160 0.6786 10.4531 26 1 8.7757 0.7682 8.8998 27 1 7.6377 2.8095 9.5479 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.8704 0.9164 -0.7822 34 1 3.8707 2.3844 -0.0002 35 1 0.4400 2.1638 -1.2491 36 1 1.8930 3.1916 -1.2489 37 1 1.6766 0.4150 -2.4985 38 1 1.6769 1.9568 -3.3884 39 1 3.1300 1.4425 -2.4985 40 1 0.4438 2.0867 1.2953 41 1 1.8185 3.2139 1.2057 42 1 2.7228 0.7960 2.3517 43 1 3.0133 0.7560 4.6712 44 1 -0.0880 2.2434 5.4363 45 1 -0.8079 2.9658 7.6754 46 1 3.1324 2.3005 9.1751 47 1 7.5816 0.2189 6.6551 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841147184.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:26 Heat of formation + Delta-G solvation = -102.917711 kcal Electronic energy + Delta-G solvation = -29776.182850 eV Core-core repulsion = 25487.183007 eV Total energy + Delta-G solvation = -4288.999843 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.80836 -41.72846 -40.58130 -39.57486 -38.02335 -35.49699 -35.06693 -34.29101 -32.59041 -31.60019 -31.07076 -30.07880 -28.26321 -27.34871 -24.96717 -24.52069 -23.84551 -23.08784 -21.72164 -20.15198 -19.95350 -19.57011 -18.97688 -18.23893 -17.32629 -17.01866 -16.86102 -16.62045 -16.47843 -16.38787 -15.99425 -15.87167 -15.69250 -15.45741 -15.24704 -15.18520 -14.87279 -14.81238 -14.02934 -13.90259 -13.75084 -13.49471 -13.40641 -13.31450 -12.99119 -12.82362 -12.61066 -12.53910 -12.34556 -12.30586 -12.15756 -11.83550 -11.66554 -11.59986 -11.32894 -11.26533 -11.03192 -10.80235 -10.01688 -9.58657 -9.52902 -8.69293 -8.49021 -6.14955 0.23313 0.48412 1.37544 1.46208 1.51421 1.68449 2.09758 2.15659 2.71003 3.07672 3.18143 3.23684 3.47593 3.57613 3.65171 3.88119 3.96084 3.98581 4.18340 4.28322 4.37924 4.48571 4.53636 4.59221 4.65106 4.70346 4.74816 4.82803 4.90781 4.94933 5.03069 5.07206 5.22285 5.24056 5.26893 5.28091 5.30978 5.35221 5.35502 5.51820 5.55056 5.62095 5.94240 5.98510 6.11827 6.27377 6.61515 6.95129 7.02395 7.52864 7.66154 8.71301 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010808 B = 0.003067 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.098707 B = 9127.281113 C =11277.164824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C 0.118 3.882 4 N -0.845 5.845 5 C -0.149 4.149 6 C -0.152 4.152 7 C 0.150 3.850 8 N -0.713 5.713 9 C 0.699 3.301 10 O -0.619 6.619 11 N -0.668 5.668 12 C 0.084 3.916 13 C -0.052 4.052 14 C -0.201 4.201 15 C 0.120 3.880 16 F -0.145 7.145 17 C -0.263 4.263 18 C 0.129 3.871 19 O -0.202 6.202 20 C -0.417 4.417 21 H 0.098 0.902 22 C -0.009 4.009 23 N -0.904 5.904 24 Si 1.011 2.989 25 H -0.259 1.259 26 H -0.269 1.269 27 H -0.263 1.263 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.352 0.648 34 H 0.344 0.656 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.048 0.952 42 H 0.411 0.589 43 H 0.412 0.588 44 H 0.148 0.852 45 H 0.158 0.842 46 H 0.136 0.864 47 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.191 -1.360 -15.938 18.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.149 4.149 3 C 0.025 3.975 4 N -0.377 5.377 5 C -0.189 4.189 6 C -0.209 4.209 7 C 0.025 3.975 8 N -0.368 5.368 9 C 0.400 3.600 10 O -0.500 6.500 11 N -0.315 5.315 12 C -0.012 4.012 13 C -0.072 4.072 14 C -0.221 4.221 15 C 0.100 3.900 16 F -0.123 7.123 17 C -0.284 4.284 18 C 0.075 3.925 19 O -0.107 6.107 20 C -0.493 4.493 21 H 0.115 0.885 22 C -0.208 4.208 23 N -0.540 5.540 24 Si 0.831 3.169 25 H -0.184 1.184 26 H -0.194 1.194 27 H -0.187 1.187 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.167 0.833 34 H 0.158 0.842 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.247 0.753 43 H 0.248 0.752 44 H 0.165 0.835 45 H 0.176 0.824 46 H 0.154 0.846 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.619 -1.113 -15.477 18.257 hybrid contribution 1.247 0.128 0.084 1.256 sum -8.372 -0.986 -15.393 17.550 Atomic orbital electron populations 1.21887 0.95095 1.02208 1.02063 1.21538 0.96202 0.94409 1.02719 1.20967 0.88443 0.95871 0.92232 1.58787 1.05889 1.20829 1.52236 1.22240 1.02465 0.99453 0.94704 1.21807 1.01243 1.01085 0.96759 1.21375 0.97794 0.95916 0.82399 1.44811 1.51224 1.37895 1.02914 1.16050 0.80984 0.81840 0.81115 1.90851 1.41861 1.31028 1.86250 1.42245 1.44813 1.41846 1.02583 1.16894 0.92271 1.08927 0.83067 1.20683 0.92652 0.97011 0.96889 1.20840 1.00761 1.09255 0.91241 1.17425 0.92597 0.99662 0.80303 1.91425 1.91087 1.88537 1.41285 1.20923 0.96510 1.12739 0.98189 1.19172 0.85382 0.95226 0.92743 1.83915 1.13982 1.73326 1.39525 1.21686 0.91988 1.39802 0.95776 0.88506 1.26375 0.98208 0.95137 1.01122 1.70122 1.19378 1.36715 1.27824 0.84752 0.76478 0.79322 0.76398 1.18373 1.19381 1.18721 0.92103 0.93517 0.91282 0.90180 0.92392 0.83252 0.84225 0.90516 0.91993 0.91632 0.91997 0.92456 0.90998 0.93376 0.75256 0.75209 0.83484 0.82408 0.84649 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.22 71.98 0.66 -1.49 16 2 C -0.11 -1.60 4.77 30.59 0.15 -1.46 16 3 C 0.12 1.81 0.41 3.53 0.00 1.81 16 4 N -0.85 -13.15 8.21 -151.56 -1.24 -14.40 16 5 C -0.15 -1.80 4.79 30.59 0.15 -1.65 16 6 C -0.15 -1.41 9.22 71.98 0.66 -0.74 16 7 C 0.15 3.35 4.51 86.38 0.39 3.74 16 8 N -0.71 -19.43 5.12 -478.53 -2.45 -21.88 16 9 C 0.70 25.26 8.29 179.05 1.48 26.74 16 10 O -0.62 -25.56 14.09 -4.00 -0.06 -25.62 16 11 N -0.67 -25.98 5.21 -316.69 -1.65 -27.63 16 12 C 0.08 3.62 6.29 38.22 0.24 3.86 16 13 C -0.05 -1.97 8.65 22.37 0.19 -1.78 16 14 C -0.20 -7.17 10.02 22.33 0.22 -6.94 16 15 C 0.12 4.75 7.29 22.37 0.16 4.91 16 16 F -0.14 -5.37 17.26 44.97 0.78 -4.60 16 17 C -0.26 -11.83 9.11 22.42 0.20 -11.62 16 18 C 0.13 6.21 6.66 22.68 0.15 6.36 16 19 O -0.20 -11.21 9.30 -22.83 -0.21 -11.42 16 20 C -0.42 -23.09 9.44 67.91 0.64 -22.45 16 21 H 0.10 5.05 5.30 -2.91 -0.02 5.03 16 22 C -0.01 -0.47 5.49 84.83 0.47 0.00 16 23 N -0.90 -51.49 13.67 21.61 0.30 -51.19 16 24 Si 1.01 41.33 29.55 68.60 2.03 43.36 16 25 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 26 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 27 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.05 0.80 6.32 -2.39 -0.02 0.78 16 30 H 0.07 0.79 6.43 -2.39 -0.02 0.77 16 31 H 0.08 0.95 6.43 -2.38 -0.02 0.93 16 32 H 0.06 1.02 7.18 -2.39 -0.02 1.00 16 33 H 0.35 4.30 7.31 -89.70 -0.66 3.64 16 34 H 0.34 5.50 9.00 -89.69 -0.81 4.70 16 35 H 0.08 0.90 6.43 -2.39 -0.02 0.89 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.06 0.57 6.43 -2.39 -0.02 0.55 16 38 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.06 0.49 6.76 -2.38 -0.02 0.48 16 40 H 0.07 1.64 6.17 -2.39 -0.01 1.62 16 41 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.41 10.37 7.34 -92.71 -0.68 9.69 16 43 H 0.41 15.75 8.57 -92.71 -0.79 14.95 16 44 H 0.15 5.36 6.47 -2.91 -0.02 5.34 16 45 H 0.16 4.51 8.06 -2.91 -0.02 4.49 16 46 H 0.14 6.17 5.71 -2.91 -0.02 6.15 16 47 H 0.27 14.43 8.31 -92.70 -0.77 13.66 16 Total: -1.00 -66.38 378.70 1.40 -64.98 By element: Atomic # 1 Polarization: 50.97 SS G_CDS: -1.86 Total: 49.11 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 5.78 Total: -0.71 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -5.05 Total: -115.10 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -0.27 Total: -37.04 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.78 Total: -4.60 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -66.38 1.40 -64.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841147184.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.934 kcal (2) G-P(sol) polarization free energy of solvation -66.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds