Wall clock time and date at job start Tue Mar 31 2020 22:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86797 * 119.99841 * 2 1 4 4 H 1.48506 * 109.47036 * 269.99393 * 3 2 1 5 5 H 1.48501 * 109.47280 * 29.99797 * 3 2 1 6 6 H 1.48503 * 109.47169 * 150.00119 * 3 2 1 7 7 C 1.38635 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99721 * 180.02562 * 7 2 1 9 9 O 1.34803 * 120.00104 * 359.97438 * 7 2 1 10 10 C 1.35777 * 116.99839 * 174.95430 * 9 7 2 11 11 C 1.38734 * 120.08833 * 5.43667 * 10 9 7 12 12 C 1.38350 * 119.97931 * 180.02562 * 11 10 9 13 13 F 1.35101 * 119.92455 * 179.97438 * 12 11 10 14 14 C 1.38549 * 120.14875 * 0.02562 * 12 11 10 15 15 C 1.38200 * 120.17243 * 359.72481 * 14 12 11 16 16 C 1.38688 * 120.02195 * 0.55031 * 15 14 12 17 17 N 1.40138 * 120.07459 * 179.72486 * 16 15 14 18 18 C 1.34780 * 120.00081 * 34.59721 * 17 16 15 19 19 O 1.21589 * 119.99681 * 355.63119 * 18 17 16 20 20 N 1.34773 * 119.99901 * 175.35645 * 18 17 16 21 21 C 1.46501 * 120.00110 * 180.27787 * 20 18 17 22 22 C 1.52994 * 109.47332 * 179.97438 * 21 20 18 23 23 C 1.53001 * 109.47307 * 179.97438 * 22 21 20 24 24 C 1.52994 * 109.47307 * 179.97438 * 23 22 21 25 25 C 1.53001 * 109.47311 * 179.97438 * 24 23 22 26 26 C 1.52994 * 109.47311 * 179.97438 * 25 24 23 27 27 N 1.46904 * 109.47155 * 180.02562 * 26 25 24 28 28 H 0.96996 * 120.00069 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.01406 * 0.02562 * 11 10 9 30 30 H 1.07996 * 119.91009 * 180.02562 * 14 12 11 31 31 H 1.08002 * 119.98847 * 180.30009 * 15 14 12 32 32 H 0.96998 * 119.99918 * 214.59760 * 17 16 15 33 33 H 0.97005 * 120.00227 * 0.27205 * 20 18 17 34 34 H 1.09007 * 109.46635 * 299.99956 * 21 20 18 35 35 H 1.09001 * 109.47012 * 59.99085 * 21 20 18 36 36 H 1.09001 * 109.47006 * 299.99262 * 22 21 20 37 37 H 1.09002 * 109.47346 * 59.99287 * 22 21 20 38 38 H 1.09007 * 109.46685 * 300.00023 * 23 22 21 39 39 H 1.09001 * 109.46988 * 59.99167 * 23 22 21 40 40 H 1.08993 * 109.47486 * 299.99785 * 24 23 22 41 41 H 1.09009 * 109.47305 * 60.00126 * 24 23 22 42 42 H 1.09007 * 109.47008 * 300.00620 * 25 24 23 43 43 H 1.09002 * 109.47137 * 59.99998 * 25 24 23 44 44 H 1.08993 * 109.47486 * 300.00182 * 26 25 24 45 45 H 1.09009 * 109.47305 * 60.00524 * 26 25 24 46 46 H 1.00900 * 110.99763 * 56.04531 * 27 26 25 47 47 H 1.00903 * 111.00139 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5473 1.4402 0.7000 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3349 -2.3681 0.0016 10 6 2.0703 -3.5045 -0.1043 11 6 3.4561 -3.4397 -0.0938 12 6 4.2032 -4.5990 -0.2025 13 9 5.5527 -4.5346 -0.1926 14 6 3.5707 -5.8258 -0.3223 15 6 2.1906 -5.8981 -0.3283 16 6 1.4346 -4.7399 -0.2256 17 7 0.0351 -4.8114 -0.2373 18 6 -0.5908 -5.8615 0.3302 19 8 0.0587 -6.7849 0.7816 20 7 -1.9364 -5.8854 0.4021 21 6 -2.6166 -7.0240 1.0244 22 6 -4.1297 -6.8023 0.9768 23 6 -4.8400 -7.9917 1.6262 24 6 -6.3531 -7.7698 1.5792 25 6 -7.0635 -8.9595 2.2279 26 6 -8.5765 -8.7373 2.1815 27 7 -9.2585 -9.8793 2.8050 28 1 -0.4850 0.8400 -0.0004 29 1 3.9515 -2.4846 -0.0009 30 1 4.1577 -6.7284 -0.4064 31 1 1.7006 -6.8565 -0.4170 32 1 -0.4831 -4.1051 -0.6539 33 1 -2.4546 -5.1487 0.0420 34 1 -2.3655 -7.9367 0.4841 35 1 -2.2956 -7.1161 2.0620 36 1 -4.3804 -5.8897 1.5175 37 1 -4.4509 -6.7099 -0.0607 38 1 -4.5892 -8.9042 1.0851 39 1 -4.5188 -8.0846 2.6636 40 1 -6.6035 -6.8575 2.1204 41 1 -6.6746 -7.6768 0.5417 42 1 -6.8129 -9.8717 1.6863 43 1 -6.7421 -9.0530 3.2653 44 1 -8.8266 -7.8252 2.7233 45 1 -8.8983 -8.6436 1.1442 46 1 -8.9293 -10.0265 3.7473 47 1 -10.2599 -9.7566 2.7864 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843042172.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:11 Heat of formation + Delta-G solvation = -98.711669 kcal Electronic energy + Delta-G solvation = -28032.314023 eV Core-core repulsion = 23743.496568 eV Total energy + Delta-G solvation = -4288.817455 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.22688 -40.20669 -38.79898 -37.29911 -36.45115 -35.53903 -34.00193 -33.70560 -32.40364 -30.85443 -29.37989 -28.31014 -26.63659 -25.48752 -23.50235 -22.35269 -21.65769 -21.46396 -21.32964 -20.35423 -18.33917 -18.15698 -17.59308 -16.75912 -16.59485 -16.09374 -15.57243 -15.40569 -15.22273 -15.12131 -14.96595 -14.77874 -14.45689 -14.28958 -13.95087 -13.65054 -13.53407 -13.36732 -13.25291 -13.04480 -12.78649 -12.37024 -12.14006 -12.05329 -11.74510 -11.65490 -11.36667 -11.34219 -11.17423 -11.02349 -10.93029 -10.80038 -10.71302 -10.54914 -9.85817 -9.75019 -9.42881 -9.18233 -8.96273 -8.93806 -7.85132 -7.08062 -6.60404 -4.18090 1.87989 2.14788 2.92856 3.06217 3.07755 3.12039 3.49981 3.85162 4.01650 4.37514 4.43069 4.51973 4.56583 4.77276 4.82229 4.85817 4.88017 4.96387 5.10640 5.14074 5.16304 5.31552 5.40082 5.51096 5.55208 5.60361 5.61393 5.73118 5.76491 5.82922 5.92497 6.05269 6.06486 6.07996 6.23540 6.54728 6.63869 6.65323 6.72308 6.93222 6.93573 6.95812 7.09636 7.17405 7.33215 7.68881 7.84193 8.29665 8.85140 8.89120 9.47913 10.56751 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011234 B = 0.002028 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.826157 B =13805.100443 C =16149.941740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.042 3.958 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.392 4.392 8 H 0.094 0.906 9 O -0.169 6.169 10 C 0.157 3.843 11 C -0.258 4.258 12 C 0.127 3.873 13 F -0.152 7.152 14 C -0.228 4.228 15 C -0.051 4.051 16 C 0.078 3.922 17 N -0.665 5.665 18 C 0.704 3.296 19 O -0.587 6.587 20 N -0.748 5.748 21 C 0.140 3.860 22 C -0.133 4.133 23 C -0.115 4.115 24 C -0.118 4.118 25 C -0.119 4.119 26 C 0.058 3.942 27 N -0.855 5.855 28 H 0.271 0.729 29 H 0.143 0.857 30 H 0.122 0.878 31 H 0.143 0.857 32 H 0.411 0.589 33 H 0.398 0.602 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.026 0.974 45 H 0.071 0.929 46 H 0.340 0.660 47 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.220 -12.132 1.695 18.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.162 4.162 3 Si 0.767 3.233 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.468 4.468 8 H 0.112 0.888 9 O -0.072 6.072 10 C 0.101 3.899 11 C -0.279 4.279 12 C 0.107 3.893 13 F -0.131 7.131 14 C -0.248 4.248 15 C -0.071 4.071 16 C -0.017 4.017 17 N -0.312 5.312 18 C 0.404 3.596 19 O -0.465 6.465 20 N -0.404 5.404 21 C 0.016 3.984 22 C -0.170 4.170 23 C -0.153 4.153 24 C -0.156 4.156 25 C -0.157 4.157 26 C -0.072 4.072 27 N -0.384 5.384 28 H 0.081 0.919 29 H 0.160 0.840 30 H 0.140 0.860 31 H 0.161 0.839 32 H 0.247 0.753 33 H 0.232 0.768 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.044 0.956 45 H 0.090 0.910 46 H 0.152 0.848 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.747 -13.176 1.574 18.400 hybrid contribution -0.113 2.382 0.414 2.421 sum -12.860 -10.794 1.988 16.906 Atomic orbital electron populations 1.70011 1.05923 1.27921 1.45665 1.25277 0.95912 0.98834 0.96213 0.85681 0.79033 0.79772 0.78844 1.19748 1.20212 1.19058 1.21354 0.91997 0.80464 1.52975 0.88840 1.83933 1.33878 1.11229 1.78129 1.18826 0.89487 0.87281 0.94345 1.20839 0.93401 0.98426 1.15234 1.17458 0.75922 0.94342 1.01529 1.91408 1.30161 1.97381 1.94117 1.20492 0.94624 0.95810 1.13892 1.20681 0.92131 0.97467 0.96845 1.16657 0.81291 0.91547 1.12185 1.42195 1.05224 1.24450 1.59340 1.15890 0.81792 0.83051 0.78845 1.90868 1.64668 1.37153 1.53836 1.45082 1.04952 1.24773 1.65558 1.21162 0.90656 0.88368 0.98239 1.21818 0.93899 0.99443 1.01885 1.21476 0.94444 0.98043 1.01343 1.21547 0.94871 0.98074 1.01153 1.21594 0.93763 0.99096 1.01287 1.21842 0.94662 0.91116 0.99608 1.58719 1.09921 1.44203 1.25569 0.91891 0.83982 0.85954 0.83945 0.75349 0.76813 0.91739 0.91732 0.91132 0.91216 0.91495 0.91581 0.91937 0.91756 0.91073 0.92140 0.95599 0.91045 0.84766 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.39 13.67 55.48 0.76 -22.63 16 2 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 3 Si 0.94 19.68 29.55 -169.99 -5.02 14.66 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.39 -10.35 9.49 30.88 0.29 -10.05 16 8 H 0.09 2.33 5.20 -52.48 -0.27 2.05 16 9 O -0.17 -4.42 9.32 0.04 0.00 -4.42 16 10 C 0.16 3.65 6.66 -38.94 -0.26 3.39 16 11 C -0.26 -5.69 9.14 -39.36 -0.36 -6.05 16 12 C 0.13 2.58 7.29 -39.43 -0.29 2.29 16 13 F -0.15 -2.94 17.26 2.25 0.04 -2.90 16 14 C -0.23 -4.31 10.02 -39.48 -0.40 -4.71 16 15 C -0.05 -1.00 8.70 -39.43 -0.34 -1.34 16 16 C 0.08 1.65 6.33 -83.44 -0.53 1.12 16 17 N -0.67 -12.46 5.20 -14.07 -0.07 -12.53 16 18 C 0.70 12.46 8.41 -86.92 -0.73 11.73 16 19 O -0.59 -12.01 13.76 5.29 0.07 -11.94 16 20 N -0.75 -9.93 5.56 -65.22 -0.36 -10.29 16 21 C 0.14 1.56 5.67 -4.04 -0.02 1.54 16 22 C -0.13 -1.06 5.33 -26.73 -0.14 -1.20 16 23 C -0.11 -0.80 5.21 -26.73 -0.14 -0.94 16 24 C -0.12 -0.74 5.21 -26.73 -0.14 -0.88 16 25 C -0.12 -0.76 5.47 -26.73 -0.15 -0.90 16 26 C 0.06 0.36 6.79 -3.82 -0.03 0.33 16 27 N -0.85 -5.05 9.62 -10.37 -0.10 -5.15 16 28 H 0.27 6.80 8.31 -40.82 -0.34 6.47 16 29 H 0.14 3.12 5.64 -52.49 -0.30 2.82 16 30 H 0.12 2.00 8.06 -52.49 -0.42 1.57 16 31 H 0.14 2.74 6.19 -52.49 -0.32 2.41 16 32 H 0.41 7.26 8.59 -40.82 -0.35 6.91 16 33 H 0.40 4.43 8.49 -40.82 -0.35 4.08 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 45 H 0.07 0.45 8.14 -51.92 -0.42 0.02 16 46 H 0.34 1.66 8.99 -39.29 -0.35 1.30 16 47 H 0.34 1.51 9.08 -39.29 -0.36 1.15 16 LS Contribution 396.74 15.07 5.98 5.98 Total: -1.00 -30.85 396.74 -8.97 -39.81 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -6.93 Total: 14.08 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -3.32 Total: -4.67 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: 0.22 Total: -50.60 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: 0.07 Total: -16.36 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.04 Total: -2.90 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.85 -8.97 -39.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843042172.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.898 kcal (2) G-P(sol) polarization free energy of solvation -30.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds