Wall clock time and date at job start Tue Mar 31 2020 22:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86794 * 120.00253 * 2 1 4 4 H 1.48505 * 109.47260 * 270.00104 * 3 2 1 5 5 H 1.48501 * 109.47069 * 29.99997 * 3 2 1 6 6 H 1.48506 * 109.47588 * 149.99825 * 3 2 1 7 7 C 1.38822 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00145 * 176.03334 * 7 2 1 9 9 N 1.36939 * 119.99493 * 356.03591 * 7 2 1 10 10 C 1.46927 * 120.62927 * 215.51768 * 9 7 2 11 11 C 1.53190 * 108.77558 * 233.58775 * 10 9 7 12 12 C 1.53041 * 109.31385 * 305.36618 * 11 10 9 13 13 N 1.46498 * 109.46117 * 181.38701 * 12 11 10 14 14 C 1.34775 * 120.00311 * 154.99924 * 13 12 11 15 15 O 1.21595 * 119.99996 * 4.88756 * 14 13 12 16 16 N 1.34775 * 120.00463 * 184.88941 * 14 13 12 17 17 C 1.46724 * 120.09371 * 354.27312 * 16 14 13 18 18 C 1.53608 * 109.85569 * 230.79976 * 17 16 14 19 19 C 1.52363 * 108.17613 * 307.26165 * 18 17 16 20 20 H 1.09001 * 109.10237 * 304.16886 * 19 18 17 21 21 C 1.53394 * 112.16454 * 183.15414 * 19 18 17 22 22 S 1.83517 * 104.04094 * 209.63630 * 21 19 18 23 23 C 1.83873 * 97.40928 * 3.49195 * 22 21 19 24 24 C 1.54033 * 108.75385 * 63.03892 * 19 18 17 25 25 H 1.08999 * 109.93344 * 53.39766 * 24 19 18 26 26 C 1.47804 * 120.15799 * 174.17034 * 16 14 13 27 27 C 1.53042 * 109.53913 * 61.36184 * 12 11 10 28 28 C 1.46926 * 120.63059 * 35.49731 * 9 7 2 29 29 H 0.96997 * 119.99982 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.58706 * 113.80174 * 10 9 7 31 31 H 1.09002 * 109.58501 * 353.37442 * 10 9 7 32 32 H 1.09003 * 109.49624 * 185.41320 * 11 10 9 33 33 H 1.08997 * 109.49952 * 65.31519 * 11 10 9 34 34 H 1.09001 * 109.45783 * 301.35676 * 12 11 10 35 35 H 0.97003 * 119.99776 * 334.99501 * 13 12 11 36 36 H 1.08998 * 109.40469 * 110.69052 * 17 16 14 37 37 H 1.08989 * 109.34581 * 350.88340 * 17 16 14 38 38 H 1.08996 * 109.72268 * 187.58698 * 18 17 16 39 39 H 1.09002 * 109.75896 * 66.95112 * 18 17 16 40 40 H 1.08999 * 110.51355 * 328.27775 * 21 19 18 41 41 H 1.08997 * 110.51301 * 90.99863 * 21 19 18 42 42 H 1.09001 * 110.99595 * 265.02778 * 23 22 21 43 43 H 1.09004 * 110.99411 * 141.20265 * 23 22 21 44 44 H 1.09004 * 109.80934 * 7.86307 * 26 16 14 45 45 H 1.08999 * 110.15596 * 246.65905 * 26 16 14 46 46 H 1.09001 * 109.49234 * 58.58709 * 27 12 11 47 47 H 1.08994 * 109.49848 * 178.68157 * 27 12 11 48 48 H 1.09004 * 109.58526 * 246.19734 * 28 9 7 49 49 H 1.08998 * 109.58871 * 6.62625 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0883 -1.2033 -0.0642 9 7 1.3280 -2.3866 0.0831 10 6 1.8891 -3.5236 0.8255 11 6 1.9139 -4.7488 -0.0936 12 6 0.5091 -4.9929 -0.6497 13 7 0.5221 -6.1836 -1.5030 14 6 -0.6109 -6.8880 -1.6945 15 8 -1.6616 -6.4867 -1.2324 16 7 -0.5794 -8.0371 -2.3980 17 6 0.6589 -8.4593 -3.0623 18 6 0.3721 -8.8006 -4.5323 19 6 -0.7762 -9.8012 -4.5726 20 1 -0.5161 -10.6674 -3.9642 21 6 -1.0889 -10.2660 -6.0006 22 16 -2.8840 -10.6454 -5.9623 23 6 -3.2015 -10.1152 -4.2306 24 6 -2.0350 -9.1342 -3.9868 25 1 -2.2290 -8.1919 -4.4992 26 6 -1.7906 -8.8778 -2.5016 27 6 0.0665 -3.7807 -1.4724 28 6 0.0208 -2.5445 -0.5688 29 1 -0.4850 0.8400 0.0004 30 1 1.2686 -3.7330 1.6969 31 1 2.9037 -3.2861 1.1454 32 1 2.2379 -5.6220 0.4727 33 1 2.6054 -4.5718 -0.9173 34 1 -0.1866 -5.1452 0.1755 35 1 1.3462 -6.4651 -1.9304 36 1 1.0588 -9.3388 -2.5577 37 1 1.3883 -7.6510 -3.0138 38 1 1.2594 -9.2404 -4.9876 39 1 0.0913 -7.8965 -5.0725 40 1 -0.8818 -9.4697 -6.7155 41 1 -0.5148 -11.1596 -6.2457 42 1 -3.1488 -10.9625 -3.5468 43 1 -4.1626 -9.6076 -4.1475 44 1 -2.6430 -8.3522 -2.0711 45 1 -1.6368 -9.8238 -1.9826 46 1 0.7755 -3.6128 -2.2830 47 1 -0.9244 -3.9649 -1.8874 48 1 -0.7521 -2.6741 0.1888 49 1 -0.1973 -1.6612 -1.1690 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868225654.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:35 Heat of formation + Delta-G solvation = -7.072053 kcal Electronic energy + Delta-G solvation = -28145.322045 eV Core-core repulsion = 24426.691558 eV Total energy + Delta-G solvation = -3718.630487 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.68418 -38.78106 -37.24700 -34.74272 -34.33886 -32.65719 -31.99004 -30.00539 -29.51949 -28.87985 -27.12382 -24.94683 -23.80136 -22.62285 -22.16196 -21.89946 -20.67665 -19.80895 -19.29911 -18.03773 -16.96121 -16.72741 -16.18846 -15.83674 -15.24259 -15.06919 -14.93139 -14.52499 -14.29482 -14.05018 -13.86343 -13.59688 -13.44105 -13.26027 -13.02701 -12.87491 -12.78659 -12.50134 -12.34189 -12.31859 -11.67109 -11.57198 -11.47856 -11.24840 -10.95886 -10.88976 -10.88445 -10.79337 -10.33450 -10.29123 -10.18685 -10.09404 -9.93102 -9.78889 -9.57930 -8.93455 -8.54452 -8.36728 -8.07116 -6.55401 -5.77059 -3.31173 1.41523 1.93554 2.58274 3.29799 3.36901 3.43716 3.45247 3.85900 4.05281 4.09761 4.16500 4.48048 4.53513 4.62961 4.71789 4.78056 4.88485 4.91373 5.07336 5.16304 5.25274 5.27004 5.33851 5.38128 5.41226 5.42666 5.50160 5.58748 5.59225 5.69961 5.85321 5.85927 6.12293 6.24669 6.27075 6.41584 6.50551 6.62780 6.68937 6.80192 6.91363 6.97651 7.07861 7.49128 7.78469 7.86104 8.04264 8.54226 8.71812 9.25512 9.84168 10.44103 11.28711 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025185 B = 0.002179 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.516779 B =12845.087382 C =13002.394516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.009 3.991 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.256 4.256 8 H 0.063 0.937 9 N -0.595 5.595 10 C 0.149 3.851 11 C -0.139 4.139 12 C 0.168 3.832 13 N -0.739 5.739 14 C 0.705 3.295 15 O -0.584 6.584 16 N -0.636 5.636 17 C 0.113 3.887 18 C -0.122 4.122 19 C -0.095 4.095 20 H 0.083 0.917 21 C -0.063 4.063 22 S -0.301 6.301 23 C -0.059 4.059 24 C -0.110 4.110 25 H 0.093 0.907 26 C 0.145 3.855 27 C -0.147 4.147 28 C 0.170 3.830 29 H 0.255 0.745 30 H 0.020 0.980 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.388 0.612 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.101 0.899 45 H 0.068 0.932 46 H 0.050 0.950 47 H 0.053 0.947 48 H 0.017 0.983 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.528 -23.650 -9.542 25.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.386 4.386 8 H 0.081 0.919 9 N -0.317 5.317 10 C 0.022 3.978 11 C -0.179 4.179 12 C 0.064 3.936 13 N -0.394 5.394 14 C 0.406 3.594 15 O -0.461 6.461 16 N -0.375 5.375 17 C -0.011 4.011 18 C -0.162 4.162 19 C -0.114 4.114 20 H 0.102 0.898 21 C -0.212 4.212 22 S -0.074 6.074 23 C -0.208 4.208 24 C -0.130 4.130 25 H 0.112 0.888 26 C 0.021 3.979 27 C -0.188 4.188 28 C 0.043 3.957 29 H 0.065 0.935 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.224 0.776 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.115 0.885 42 H 0.112 0.888 43 H 0.125 0.875 44 H 0.120 0.880 45 H 0.086 0.914 46 H 0.069 0.931 47 H 0.071 0.929 48 H 0.035 0.965 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.099 -23.638 -10.008 25.693 hybrid contribution 1.613 1.056 0.436 1.976 sum 0.514 -22.582 -9.572 24.532 Atomic orbital electron populations 1.69897 1.05358 1.25491 1.53876 1.25348 0.95543 0.98321 0.99789 0.86291 0.79141 0.83657 0.77641 1.21446 1.21537 1.20410 1.19129 0.90669 0.83157 1.45597 0.91891 1.44052 1.20186 1.09810 1.57699 1.20857 0.97734 0.87007 0.92225 1.22350 0.95323 0.99658 1.00527 1.20937 0.97759 0.82670 0.92214 1.45750 1.09904 1.30258 1.53536 1.15930 0.84654 0.79601 0.79182 1.90930 1.29518 1.70086 1.55610 1.47446 1.11951 1.22988 1.55110 1.21587 0.86524 1.00599 0.92410 1.21897 0.98133 0.99361 0.96771 1.21809 0.96132 0.98974 0.94520 0.89820 1.23892 0.93182 1.04469 0.99614 1.87797 1.12745 1.86636 1.20172 1.24094 1.01718 1.01209 0.93772 1.22561 0.92693 0.99625 0.98158 0.88841 1.21407 0.88369 0.94514 0.93648 1.22609 0.99820 0.96798 0.99540 1.20958 0.86303 0.94657 0.93735 0.93452 0.96182 0.92374 0.92795 0.92060 0.90261 0.77599 0.91457 0.90045 0.89930 0.90679 0.88782 0.88521 0.88755 0.87492 0.88026 0.91379 0.93080 0.92864 0.96452 0.88091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.21 10.63 55.49 0.59 -25.62 16 2 C 0.01 0.25 5.31 -17.43 -0.09 0.15 16 3 Si 0.90 21.53 29.55 -169.99 -5.02 16.51 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.26 -6.95 9.55 -15.05 -0.14 -7.10 16 8 H 0.06 1.67 7.83 -52.49 -0.41 1.26 16 9 N -0.59 -14.87 3.00 -172.32 -0.52 -15.38 16 10 C 0.15 3.06 6.52 -3.71 -0.02 3.03 16 11 C -0.14 -2.29 5.55 -26.61 -0.15 -2.44 16 12 C 0.17 2.95 2.38 -67.89 -0.16 2.79 16 13 N -0.74 -10.49 4.97 -58.63 -0.29 -10.78 16 14 C 0.70 10.64 8.24 -86.92 -0.72 9.93 16 15 O -0.58 -11.39 15.40 5.28 0.08 -11.31 16 16 N -0.64 -6.78 2.99 -178.00 -0.53 -7.31 16 17 C 0.11 0.81 6.32 -3.60 -0.02 0.78 16 18 C -0.12 -0.71 5.49 -26.74 -0.15 -0.86 16 19 C -0.09 -0.58 2.09 -90.20 -0.19 -0.77 16 20 H 0.08 0.48 8.11 -51.93 -0.42 0.05 16 21 C -0.06 -0.41 6.87 37.36 0.26 -0.15 16 22 S -0.30 -2.65 23.27 -107.50 -2.50 -5.15 16 23 C -0.06 -0.42 6.85 37.87 0.26 -0.17 16 24 C -0.11 -0.85 2.37 -89.53 -0.21 -1.06 16 25 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 26 C 0.15 1.33 5.95 -3.49 -0.02 1.31 16 27 C -0.15 -3.00 5.65 -26.61 -0.15 -3.15 16 28 C 0.17 4.19 5.26 -3.71 -0.02 4.17 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 1.15 7.93 -51.93 -0.41 0.73 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.08 1.58 7.65 -51.93 -0.40 1.19 16 35 H 0.39 4.36 6.07 -40.82 -0.25 4.11 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.56 5.63 -51.94 -0.29 0.26 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.60 8.00 -51.93 -0.42 0.18 16 41 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.10 1.15 7.00 -51.93 -0.36 0.79 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 47 H 0.05 1.12 8.09 -51.93 -0.42 0.70 16 48 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.10 2.80 5.93 -51.93 -0.31 2.49 16 LS Contribution 381.95 15.07 5.76 5.76 Total: -1.00 -32.34 381.95 -12.29 -44.63 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -8.32 Total: 2.20 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: -1.53 Total: 6.47 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: -0.75 Total: -59.10 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.08 Total: -11.31 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -2.65 SS G_CDS: -2.50 Total: -5.15 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.34 -12.29 -44.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868225654.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.561 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds