Wall clock time and date at job start Tue Mar 31 2020 22:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86794 * 120.00253 * 2 1 4 4 H 1.48505 * 109.47260 * 270.00104 * 3 2 1 5 5 H 1.48501 * 109.47069 * 29.99997 * 3 2 1 6 6 H 1.48506 * 109.47588 * 149.99825 * 3 2 1 7 7 C 1.38822 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00145 * 176.03334 * 7 2 1 9 9 N 1.36939 * 119.99493 * 356.03591 * 7 2 1 10 10 C 1.46927 * 120.62927 * 215.51768 * 9 7 2 11 11 C 1.53190 * 108.77558 * 233.58775 * 10 9 7 12 12 C 1.53041 * 109.31385 * 305.36618 * 11 10 9 13 13 N 1.46498 * 109.46117 * 181.38701 * 12 11 10 14 14 C 1.34775 * 120.00311 * 154.99924 * 13 12 11 15 15 O 1.21595 * 119.99996 * 4.88756 * 14 13 12 16 16 N 1.34775 * 120.00463 * 184.88941 * 14 13 12 17 17 C 1.46724 * 120.09371 * 354.27312 * 16 14 13 18 18 C 1.53608 * 109.85569 * 230.79976 * 17 16 14 19 19 C 1.52363 * 108.17613 * 307.26165 * 18 17 16 20 20 H 1.09001 * 109.10237 * 304.16886 * 19 18 17 21 21 C 1.53394 * 112.16454 * 183.15414 * 19 18 17 22 22 S 1.83517 * 104.04094 * 209.63630 * 21 19 18 23 23 C 1.83873 * 97.40928 * 3.49195 * 22 21 19 24 24 C 1.54033 * 108.75385 * 63.03892 * 19 18 17 25 25 H 1.08999 * 109.93344 * 53.39766 * 24 19 18 26 26 C 1.47804 * 120.15799 * 174.17034 * 16 14 13 27 27 C 1.53042 * 109.53913 * 61.36184 * 12 11 10 28 28 C 1.46926 * 120.63059 * 35.49731 * 9 7 2 29 29 H 0.96997 * 119.99982 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.58706 * 113.80174 * 10 9 7 31 31 H 1.09002 * 109.58501 * 353.37442 * 10 9 7 32 32 H 1.09003 * 109.49624 * 185.41320 * 11 10 9 33 33 H 1.08997 * 109.49952 * 65.31519 * 11 10 9 34 34 H 1.09001 * 109.45783 * 301.35676 * 12 11 10 35 35 H 0.97003 * 119.99776 * 334.99501 * 13 12 11 36 36 H 1.08998 * 109.40469 * 110.69052 * 17 16 14 37 37 H 1.08989 * 109.34581 * 350.88340 * 17 16 14 38 38 H 1.08996 * 109.72268 * 187.58698 * 18 17 16 39 39 H 1.09002 * 109.75896 * 66.95112 * 18 17 16 40 40 H 1.08999 * 110.51355 * 328.27775 * 21 19 18 41 41 H 1.08997 * 110.51301 * 90.99863 * 21 19 18 42 42 H 1.09001 * 110.99595 * 265.02778 * 23 22 21 43 43 H 1.09004 * 110.99411 * 141.20265 * 23 22 21 44 44 H 1.09004 * 109.80934 * 7.86307 * 26 16 14 45 45 H 1.08999 * 110.15596 * 246.65905 * 26 16 14 46 46 H 1.09001 * 109.49234 * 58.58709 * 27 12 11 47 47 H 1.08994 * 109.49848 * 178.68157 * 27 12 11 48 48 H 1.09004 * 109.58526 * 246.19734 * 28 9 7 49 49 H 1.08998 * 109.58871 * 6.62625 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0883 -1.2033 -0.0642 9 7 1.3280 -2.3866 0.0831 10 6 1.8891 -3.5236 0.8255 11 6 1.9139 -4.7488 -0.0936 12 6 0.5091 -4.9929 -0.6497 13 7 0.5221 -6.1836 -1.5030 14 6 -0.6109 -6.8880 -1.6945 15 8 -1.6616 -6.4867 -1.2324 16 7 -0.5794 -8.0371 -2.3980 17 6 0.6589 -8.4593 -3.0623 18 6 0.3721 -8.8006 -4.5323 19 6 -0.7762 -9.8012 -4.5726 20 1 -0.5161 -10.6674 -3.9642 21 6 -1.0889 -10.2660 -6.0006 22 16 -2.8840 -10.6454 -5.9623 23 6 -3.2015 -10.1152 -4.2306 24 6 -2.0350 -9.1342 -3.9868 25 1 -2.2290 -8.1919 -4.4992 26 6 -1.7906 -8.8778 -2.5016 27 6 0.0665 -3.7807 -1.4724 28 6 0.0208 -2.5445 -0.5688 29 1 -0.4850 0.8400 0.0004 30 1 1.2686 -3.7330 1.6969 31 1 2.9037 -3.2861 1.1454 32 1 2.2379 -5.6220 0.4727 33 1 2.6054 -4.5718 -0.9173 34 1 -0.1866 -5.1452 0.1755 35 1 1.3462 -6.4651 -1.9304 36 1 1.0588 -9.3388 -2.5577 37 1 1.3883 -7.6510 -3.0138 38 1 1.2594 -9.2404 -4.9876 39 1 0.0913 -7.8965 -5.0725 40 1 -0.8818 -9.4697 -6.7155 41 1 -0.5148 -11.1596 -6.2457 42 1 -3.1488 -10.9625 -3.5468 43 1 -4.1626 -9.6076 -4.1475 44 1 -2.6430 -8.3522 -2.0711 45 1 -1.6368 -9.8238 -1.9826 46 1 0.7755 -3.6128 -2.2830 47 1 -0.9244 -3.9649 -1.8874 48 1 -0.7521 -2.6741 0.1888 49 1 -0.1973 -1.6612 -1.1690 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868225654.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:34 Heat of formation + Delta-G solvation = -26.395681 kcal Electronic energy + Delta-G solvation = -28146.159980 eV Core-core repulsion = 24426.691558 eV Total energy + Delta-G solvation = -3719.468423 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.66661 -39.82170 -38.72428 -36.06849 -35.50110 -33.83801 -33.18337 -31.70707 -31.16969 -29.55803 -28.00846 -26.68566 -24.65755 -23.83594 -23.53842 -23.15383 -21.44796 -21.19347 -20.54593 -19.21935 -18.55911 -17.72502 -17.22327 -16.82531 -16.65992 -16.10238 -15.82835 -15.70736 -15.43012 -15.29061 -15.03773 -14.82240 -14.76777 -14.53827 -14.21228 -13.96012 -13.81158 -13.50869 -13.39331 -13.22761 -12.98716 -12.77663 -12.75020 -12.58978 -12.26980 -12.22744 -12.05146 -12.00484 -11.87602 -11.75113 -11.55888 -11.46755 -11.41865 -11.11110 -10.90917 -10.54925 -10.13552 -9.52514 -8.74857 -8.57909 -7.85175 -5.42959 0.82584 1.34173 1.47711 1.49195 1.58640 1.62560 2.13878 2.50700 2.89929 3.30996 3.48071 3.52463 3.60092 3.70491 3.89278 3.94595 4.05459 4.12756 4.17030 4.18904 4.30495 4.35881 4.39825 4.50579 4.56677 4.62598 4.70163 4.70983 4.74468 4.78809 4.83214 4.84664 4.89271 4.98508 5.03343 5.08567 5.10591 5.16800 5.32040 5.34831 5.50756 5.53779 5.62264 5.65171 5.79221 5.91909 6.46378 6.99061 7.17538 7.58191 7.84694 8.40217 9.19054 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025185 B = 0.002179 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.516779 B =12845.087382 C =13002.394516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.050 4.050 3 Si 0.971 3.029 4 H -0.284 1.284 5 H -0.297 1.297 6 H -0.264 1.264 7 C -0.263 4.263 8 H 0.073 0.927 9 N -0.612 5.612 10 C 0.142 3.858 11 C -0.120 4.120 12 C 0.181 3.819 13 N -0.726 5.726 14 C 0.699 3.301 15 O -0.637 6.637 16 N -0.628 5.628 17 C 0.106 3.894 18 C -0.115 4.115 19 C -0.088 4.088 20 H 0.101 0.899 21 C -0.049 4.049 22 S -0.357 6.357 23 C -0.048 4.048 24 C -0.102 4.102 25 H 0.067 0.933 26 C 0.145 3.855 27 C -0.130 4.130 28 C 0.179 3.821 29 H 0.249 0.751 30 H 0.012 0.988 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.408 0.592 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.059 0.941 40 H 0.093 0.907 41 H 0.115 0.885 42 H 0.112 0.888 43 H 0.102 0.898 44 H 0.073 0.927 45 H 0.094 0.906 46 H 0.056 0.944 47 H 0.038 0.962 48 H -0.015 1.015 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.705 -26.197 -10.194 28.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.246 4.246 3 Si 0.799 3.201 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.189 1.189 7 C -0.393 4.393 8 H 0.091 0.909 9 N -0.336 5.336 10 C 0.016 3.984 11 C -0.160 4.160 12 C 0.076 3.924 13 N -0.382 5.382 14 C 0.400 3.600 15 O -0.518 6.518 16 N -0.365 5.365 17 C -0.017 4.017 18 C -0.155 4.155 19 C -0.107 4.107 20 H 0.119 0.881 21 C -0.197 4.197 22 S -0.129 6.129 23 C -0.196 4.196 24 C -0.123 4.123 25 H 0.086 0.914 26 C 0.021 3.979 27 C -0.171 4.171 28 C 0.053 3.947 29 H 0.059 0.941 30 H 0.030 0.970 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.247 0.753 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.131 0.869 39 H 0.077 0.923 40 H 0.112 0.888 41 H 0.133 0.867 42 H 0.130 0.870 43 H 0.120 0.880 44 H 0.091 0.909 45 H 0.112 0.888 46 H 0.075 0.925 47 H 0.057 0.943 48 H 0.003 0.997 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.142 -26.265 -10.701 28.442 hybrid contribution 0.591 1.785 0.623 1.981 sum 2.734 -24.480 -10.078 26.614 Atomic orbital electron populations 1.70117 1.06964 1.25733 1.55566 1.26159 0.96291 1.01855 1.00246 0.85219 0.78124 0.79192 0.77575 1.21069 1.22335 1.18896 1.19528 0.91245 0.84076 1.44442 0.90937 1.44285 1.19873 1.10753 1.58673 1.21059 0.97719 0.87059 0.92547 1.22140 0.94434 0.99004 1.00400 1.20508 0.97977 0.82621 0.91322 1.45323 1.10713 1.29008 1.53203 1.16147 0.83896 0.80587 0.79369 1.90904 1.31420 1.71657 1.57823 1.47498 1.13725 1.21403 1.53879 1.21925 0.84805 1.01852 0.93085 1.21876 0.99084 0.98742 0.95793 1.21784 0.95066 0.99427 0.94439 0.88061 1.23936 0.90726 1.05251 0.99781 1.88012 1.16004 1.86837 1.22067 1.24075 1.01322 1.01482 0.92707 1.22428 0.94126 0.98862 0.96908 0.91409 1.21486 0.87052 0.94751 0.94659 1.22333 0.99323 0.96430 0.98967 1.20604 0.85955 0.95167 0.92998 0.94130 0.96969 0.91207 0.88975 0.90764 0.92896 0.75312 0.88748 0.89423 0.86933 0.92262 0.88794 0.86652 0.87002 0.87972 0.90875 0.88761 0.92533 0.94326 0.99728 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.71 10.63 21.65 0.23 -56.48 16 2 C -0.05 -2.83 5.31 84.87 0.45 -2.38 16 3 Si 0.97 44.74 29.55 68.60 2.03 46.77 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 5 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.26 -14.32 9.55 84.04 0.80 -13.51 16 8 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 9 N -0.61 -30.95 3.00 -699.09 -2.10 -33.05 16 10 C 0.14 5.67 6.52 86.36 0.56 6.23 16 11 C -0.12 -3.65 5.55 30.67 0.17 -3.48 16 12 C 0.18 6.25 2.38 45.02 0.11 6.35 16 13 N -0.73 -19.24 4.97 -457.68 -2.28 -21.52 16 14 C 0.70 20.58 8.24 179.06 1.47 22.06 16 15 O -0.64 -25.60 15.40 -4.02 -0.06 -25.66 16 16 N -0.63 -12.16 2.99 -835.33 -2.50 -14.66 16 17 C 0.11 1.09 6.32 86.54 0.55 1.64 16 18 C -0.12 -0.92 5.49 30.59 0.17 -0.76 16 19 C -0.09 -0.80 2.09 -10.52 -0.02 -0.82 16 20 H 0.10 0.66 8.11 -2.39 -0.02 0.64 16 21 C -0.05 -0.50 6.87 72.11 0.50 -0.01 16 22 S -0.36 -5.94 23.27 -56.49 -1.31 -7.26 16 23 C -0.05 -0.63 6.85 72.44 0.50 -0.14 16 24 C -0.10 -1.45 2.37 -10.09 -0.02 -1.47 16 25 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 26 C 0.14 2.47 5.95 86.02 0.51 2.98 16 27 C -0.13 -5.42 5.65 30.67 0.17 -5.25 16 28 C 0.18 9.27 5.26 86.36 0.45 9.73 16 29 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 30 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.07 2.60 7.93 -2.39 -0.02 2.59 16 32 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.05 2.14 7.65 -2.39 -0.02 2.13 16 35 H 0.41 7.70 6.07 -92.71 -0.56 7.14 16 36 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.09 0.82 5.63 -2.39 -0.01 0.81 16 38 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.09 0.98 8.00 -2.39 -0.02 0.97 16 41 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 44 H 0.07 1.70 7.00 -2.39 -0.02 1.69 16 45 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 47 H 0.04 1.70 8.09 -2.39 -0.02 1.68 16 48 H -0.02 -0.88 8.14 -2.38 -0.02 -0.90 16 49 H 0.07 3.84 5.93 -2.39 -0.01 3.83 16 Total: -1.00 -75.04 381.95 0.75 -74.29 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.37 Total: 16.39 kcal Atomic # 6 Polarization: 14.81 SS G_CDS: 6.37 Total: 21.17 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -6.64 Total: -125.72 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.06 Total: -25.66 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: -5.94 SS G_CDS: -1.31 Total: -7.26 kcal Total: -75.04 0.75 -74.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868225654.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.897 kcal (2) G-P(sol) polarization free energy of solvation -75.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds