Wall clock time and date at job start Tue Mar 31 2020 22:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99901 * 2 1 4 4 H 1.48497 * 109.47483 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46735 * 299.99688 * 3 2 1 6 6 H 1.48506 * 109.46981 * 59.99430 * 3 2 1 7 7 C 1.38812 * 120.00318 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00039 * 154.58262 * 7 2 1 9 9 N 1.36942 * 120.00018 * 334.58091 * 7 2 1 10 10 C 1.46929 * 120.62956 * 315.96506 * 9 7 2 11 11 C 1.53189 * 108.77346 * 233.58534 * 10 9 7 12 12 C 1.53045 * 109.31264 * 305.36432 * 11 10 9 13 13 O 1.45195 * 109.46023 * 181.38534 * 12 11 10 14 14 C 1.34801 * 116.99806 * 150.00279 * 13 12 11 15 15 O 1.21531 * 120.00061 * 359.97438 * 14 13 12 16 16 C 1.46957 * 119.99795 * 180.27559 * 14 13 12 17 17 C 1.33082 * 119.99481 * 184.56861 * 16 14 13 18 18 C 1.50693 * 120.00630 * 11.34983 * 17 16 14 19 19 O 1.42898 * 109.47244 * 138.20617 * 18 17 16 20 20 C 1.42904 * 113.99962 * 179.97438 * 19 18 17 21 21 C 1.53176 * 109.54826 * 269.55844 * 20 19 18 22 22 C 1.53087 * 109.16465 * 183.15198 * 21 20 19 23 23 O 1.42901 * 109.41470 * 57.61143 * 22 21 20 24 24 C 1.42902 * 114.09727 * 298.84366 * 23 22 21 25 25 C 1.53086 * 109.41788 * 61.15349 * 24 23 22 26 26 C 1.53041 * 109.53882 * 61.36487 * 12 11 10 27 27 C 1.46925 * 120.63133 * 135.93636 * 9 7 2 28 28 H 0.96993 * 120.00438 * 0.02562 * 1 2 3 29 29 H 1.08991 * 109.58606 * 113.80075 * 10 9 7 30 30 H 1.09002 * 109.70119 * 353.43659 * 10 9 7 31 31 H 1.08994 * 109.50104 * 185.41557 * 11 10 9 32 32 H 1.09002 * 109.52780 * 65.32787 * 11 10 9 33 33 H 1.09000 * 109.45866 * 301.36146 * 12 11 10 34 34 H 1.07998 * 120.00148 * 4.57285 * 16 14 13 35 35 H 1.08012 * 119.99391 * 191.35128 * 17 16 14 36 36 H 1.08999 * 109.47604 * 258.20906 * 18 17 16 37 37 H 1.09009 * 109.46988 * 18.20750 * 18 17 16 38 38 H 1.09000 * 109.54072 * 29.83130 * 20 19 18 39 39 H 1.08998 * 109.52226 * 303.06081 * 21 20 19 40 40 H 1.09007 * 109.52202 * 63.24477 * 21 20 19 41 41 H 1.08999 * 109.47830 * 297.62748 * 22 21 20 42 42 H 1.09004 * 109.47683 * 177.59270 * 22 21 20 43 43 H 1.09008 * 109.47743 * 301.17337 * 24 23 22 44 44 H 1.08999 * 109.48908 * 181.15140 * 24 23 22 45 45 H 1.09001 * 109.52579 * 182.48614 * 25 24 23 46 46 H 1.09002 * 109.51799 * 62.30191 * 25 24 23 47 47 H 1.09000 * 109.49546 * 58.58492 * 26 12 11 48 48 H 1.09000 * 109.50266 * 178.68306 * 26 12 11 49 49 H 1.08998 * 109.58614 * 246.20480 * 27 9 7 50 50 H 1.08998 * 109.58407 * 6.48988 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8912 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0119 -1.2475 -0.4009 9 7 1.4251 -2.3305 0.5101 10 6 0.6828 -2.2818 1.7771 11 6 1.2442 -3.3517 2.7189 12 6 1.2053 -4.7124 2.0195 13 8 1.7063 -5.7342 2.9211 14 6 1.2061 -6.9775 2.7755 15 8 0.3738 -7.2011 1.9187 16 6 1.6625 -8.0610 3.6572 17 6 1.2380 -9.3061 3.4557 18 6 0.5028 -9.6558 2.1877 19 8 0.9633 -10.9186 1.7028 20 6 0.3258 -11.3459 0.4973 21 6 -0.9143 -12.1771 0.8401 22 6 -1.5453 -12.6958 -0.4547 23 8 -0.5814 -13.4632 -1.1786 24 6 0.5791 -12.7253 -1.5673 25 6 1.2954 -12.2078 -0.3173 26 6 2.0790 -4.6676 0.7637 27 6 1.5270 -3.6126 -0.2001 28 1 -0.4850 0.8399 -0.0004 29 1 -0.3730 -2.4775 1.5898 30 1 0.7970 -1.2980 2.2324 31 1 0.6406 -3.3914 3.6255 32 1 2.2739 -3.1051 2.9778 33 1 0.1785 -4.9473 1.7390 34 1 2.3423 -7.8468 4.4686 35 1 1.4205 -10.0661 4.2013 36 1 -0.5665 -9.7128 2.3915 37 1 0.6890 -8.8883 1.4363 38 1 0.0322 -10.4748 -0.0884 39 1 -0.6256 -13.0201 1.4678 40 1 -1.6340 -11.5551 1.3724 41 1 -1.8704 -11.8524 -1.0638 42 1 -2.4036 -13.3234 -0.2147 43 1 0.2817 -11.8823 -2.1911 44 1 1.2511 -13.3740 -2.1291 45 1 2.1560 -11.6077 -0.6128 46 1 1.6287 -13.0514 0.2870 47 1 3.1008 -4.4083 1.0406 48 1 2.0695 -5.6438 0.2789 49 1 0.5400 -3.9167 -0.5487 50 1 2.1986 -3.5060 -1.0520 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870245818.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:02 Heat of formation + Delta-G solvation = -142.340521 kcal Electronic energy + Delta-G solvation = -29617.778831 eV Core-core repulsion = 25418.237040 eV Total energy + Delta-G solvation = -4199.541790 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.51649 -39.91098 -38.10055 -37.42963 -35.93579 -34.14015 -32.73942 -32.41035 -31.53329 -30.35254 -29.89402 -27.33161 -25.27225 -24.49849 -23.99276 -23.28337 -22.30579 -21.64242 -20.81005 -19.75157 -19.22462 -17.88262 -17.27375 -16.95167 -16.51606 -16.46143 -16.05631 -15.73310 -15.38958 -15.12125 -14.80571 -14.37936 -14.29195 -13.91322 -13.80467 -13.71812 -13.36632 -13.15242 -13.03693 -12.79419 -12.63785 -12.56129 -12.23429 -11.80734 -11.67833 -11.50070 -11.45948 -11.30840 -11.20362 -10.82073 -10.78924 -10.73848 -10.45326 -10.31024 -10.23479 -10.10938 -10.04658 -9.84106 -9.66543 -9.55030 -9.42736 -8.47169 -6.59087 -5.87055 -3.45246 0.87931 2.81591 2.89350 3.31527 3.33512 3.41105 3.44932 3.51723 4.34350 4.37514 4.43396 4.55916 4.61883 4.69972 4.77406 4.81767 4.98465 5.08148 5.12451 5.18854 5.21525 5.22802 5.24766 5.28106 5.36756 5.43243 5.46970 5.52199 5.61109 5.67392 5.71255 5.80284 5.84687 5.90771 6.00033 6.19180 6.34390 6.36761 6.45331 6.49459 6.76261 6.77318 6.81563 6.92279 6.93790 7.03147 7.28413 7.81271 7.87524 8.48746 9.11340 9.71162 10.40828 11.14426 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.017871 B = 0.002002 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.431627 B =13979.642341 C =14880.220794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.025 3.975 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.286 1.286 7 C -0.276 4.276 8 H 0.059 0.941 9 N -0.585 5.585 10 C 0.175 3.825 11 C -0.134 4.134 12 C 0.099 3.901 13 O -0.351 6.351 14 C 0.486 3.514 15 O -0.511 6.511 16 C -0.183 4.183 17 C -0.051 4.051 18 C 0.057 3.943 19 O -0.383 6.383 20 C 0.091 3.909 21 C -0.179 4.179 22 C 0.063 3.937 23 O -0.383 6.383 24 C 0.063 3.937 25 C -0.153 4.153 26 C -0.146 4.146 27 C 0.149 3.851 28 H 0.255 0.745 29 H 0.025 0.975 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.147 0.853 35 H 0.140 0.860 36 H 0.067 0.933 37 H 0.104 0.896 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.053 0.947 42 H 0.097 0.903 43 H 0.054 0.946 44 H 0.100 0.900 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.067 0.933 48 H 0.053 0.947 49 H 0.020 0.980 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.119 -24.390 4.775 24.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.178 4.178 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.213 1.213 7 C -0.406 4.406 8 H 0.076 0.924 9 N -0.308 5.308 10 C 0.048 3.952 11 C -0.173 4.173 12 C 0.045 3.955 13 O -0.268 6.268 14 C 0.333 3.667 15 O -0.403 6.403 16 C -0.202 4.202 17 C -0.070 4.070 18 C -0.018 4.018 19 O -0.303 6.303 20 C 0.033 3.967 21 C -0.217 4.217 22 C -0.014 4.014 23 O -0.302 6.302 24 C -0.014 4.014 25 C -0.191 4.191 26 C -0.185 4.185 27 C 0.023 3.977 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.165 0.835 35 H 0.158 0.842 36 H 0.085 0.915 37 H 0.122 0.878 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.071 0.929 42 H 0.115 0.885 43 H 0.072 0.928 44 H 0.118 0.882 45 H 0.100 0.900 46 H 0.099 0.901 47 H 0.086 0.914 48 H 0.072 0.928 49 H 0.038 0.962 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.136 -24.539 4.539 24.956 hybrid contribution 0.106 1.379 0.170 1.393 sum -0.030 -23.160 4.709 23.634 Atomic orbital electron populations 1.70167 1.05831 1.25986 1.49805 1.25389 0.94855 0.99241 0.98318 0.86436 0.80181 0.83949 0.77405 1.19814 1.21514 1.21263 1.18935 0.95850 0.86214 1.39590 0.92362 1.43934 1.62830 1.04535 1.19527 1.20713 0.93742 0.95451 0.85256 1.22397 1.02739 0.93037 0.99158 1.22920 0.98465 0.85150 0.88927 1.86653 1.63648 1.18313 1.58145 1.21585 0.79289 0.83843 0.81936 1.90707 1.32244 1.82439 1.34904 1.22081 1.04040 0.91440 1.02634 1.23570 0.91659 0.95838 0.95919 1.22399 0.97646 0.86174 0.95592 1.87842 1.63764 1.37334 1.41372 1.22061 0.92274 0.96302 0.86047 1.22738 0.98336 1.01358 0.99236 1.22567 0.91451 0.96045 0.91357 1.87937 1.30193 1.37812 1.74229 1.22598 0.87218 0.96566 0.95012 1.22296 0.99031 1.00590 0.97162 1.22474 1.00133 1.00000 0.95895 1.20908 0.97651 0.86079 0.93107 0.93513 0.95675 0.91271 0.92349 0.91234 0.90242 0.83521 0.84220 0.91483 0.87837 0.91623 0.90128 0.90595 0.92859 0.88468 0.92785 0.88181 0.90006 0.90115 0.91378 0.92791 0.96168 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.37 12.99 55.49 0.72 -24.65 16 2 C 0.02 0.68 4.70 -17.43 -0.08 0.60 16 3 Si 0.89 21.12 29.62 -169.99 -5.04 16.09 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.28 -7.54 9.29 -15.06 -0.14 -7.68 16 8 H 0.06 1.59 7.95 -52.48 -0.42 1.17 16 9 N -0.59 -14.60 2.87 -172.32 -0.49 -15.10 16 10 C 0.17 4.01 5.56 -3.71 -0.02 3.99 16 11 C -0.13 -2.52 5.74 -26.61 -0.15 -2.67 16 12 C 0.10 1.80 2.42 -26.69 -0.06 1.73 16 13 O -0.35 -5.72 9.89 -40.77 -0.40 -6.13 16 14 C 0.49 7.12 7.72 34.26 0.26 7.38 16 15 O -0.51 -8.37 12.43 -19.29 -0.24 -8.61 16 16 C -0.18 -1.93 10.14 -37.85 -0.38 -2.32 16 17 C -0.05 -0.49 9.96 -36.10 -0.36 -0.85 16 18 C 0.06 0.62 5.11 36.00 0.18 0.81 16 19 O -0.38 -4.18 9.98 -35.23 -0.35 -4.53 16 20 C 0.09 0.85 2.70 -26.55 -0.07 0.78 16 21 C -0.18 -1.44 5.76 -26.60 -0.15 -1.60 16 22 C 0.06 0.47 6.84 37.20 0.25 0.73 16 23 O -0.38 -3.53 10.77 -35.23 -0.38 -3.91 16 24 C 0.06 0.47 6.84 37.20 0.25 0.72 16 25 C -0.15 -1.25 5.79 -26.60 -0.15 -1.40 16 26 C -0.15 -2.70 5.72 -26.61 -0.15 -2.85 16 27 C 0.15 3.23 6.52 -3.71 -0.02 3.20 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.70 7.44 -51.93 -0.39 1.31 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.08 1.53 7.16 -51.93 -0.37 1.15 16 34 H 0.15 1.20 8.06 -52.49 -0.42 0.77 16 35 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 36 H 0.07 0.70 7.99 -51.93 -0.42 0.29 16 37 H 0.10 1.37 5.08 -52.10 -0.26 1.11 16 38 H 0.07 0.63 7.79 -51.93 -0.40 0.23 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.57 7.99 -51.93 -0.42 0.16 16 41 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 44 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 48 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.06 1.32 7.93 -51.93 -0.41 0.91 16 LS Contribution 400.30 15.07 6.03 6.03 Total: -1.00 -31.18 400.30 -9.51 -40.69 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -8.56 Total: -0.46 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -0.80 Total: 0.58 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.23 Total: -39.75 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -1.37 Total: -23.18 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.04 Total: 16.09 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.18 -9.51 -40.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870245818.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.646 kcal (2) G-P(sol) polarization free energy of solvation -31.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds