Wall clock time and date at job start Tue Mar 31 2020 22:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99901 * 2 1 4 4 H 1.48497 * 109.47483 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46735 * 299.99688 * 3 2 1 6 6 H 1.48506 * 109.46981 * 59.99430 * 3 2 1 7 7 C 1.38812 * 120.00318 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00039 * 154.58262 * 7 2 1 9 9 N 1.36942 * 120.00018 * 334.58091 * 7 2 1 10 10 C 1.46929 * 120.62956 * 315.96506 * 9 7 2 11 11 C 1.53189 * 108.77346 * 233.58534 * 10 9 7 12 12 C 1.53045 * 109.31264 * 305.36432 * 11 10 9 13 13 O 1.45195 * 109.46023 * 181.38534 * 12 11 10 14 14 C 1.34801 * 116.99806 * 150.00279 * 13 12 11 15 15 O 1.21531 * 120.00061 * 359.97438 * 14 13 12 16 16 C 1.46957 * 119.99795 * 180.27559 * 14 13 12 17 17 C 1.33082 * 119.99481 * 184.56861 * 16 14 13 18 18 C 1.50693 * 120.00630 * 11.34983 * 17 16 14 19 19 O 1.42898 * 109.47244 * 138.20617 * 18 17 16 20 20 C 1.42904 * 113.99962 * 179.97438 * 19 18 17 21 21 C 1.53176 * 109.54826 * 269.55844 * 20 19 18 22 22 C 1.53087 * 109.16465 * 183.15198 * 21 20 19 23 23 O 1.42901 * 109.41470 * 57.61143 * 22 21 20 24 24 C 1.42902 * 114.09727 * 298.84366 * 23 22 21 25 25 C 1.53086 * 109.41788 * 61.15349 * 24 23 22 26 26 C 1.53041 * 109.53882 * 61.36487 * 12 11 10 27 27 C 1.46925 * 120.63133 * 135.93636 * 9 7 2 28 28 H 0.96993 * 120.00438 * 0.02562 * 1 2 3 29 29 H 1.08991 * 109.58606 * 113.80075 * 10 9 7 30 30 H 1.09002 * 109.70119 * 353.43659 * 10 9 7 31 31 H 1.08994 * 109.50104 * 185.41557 * 11 10 9 32 32 H 1.09002 * 109.52780 * 65.32787 * 11 10 9 33 33 H 1.09000 * 109.45866 * 301.36146 * 12 11 10 34 34 H 1.07998 * 120.00148 * 4.57285 * 16 14 13 35 35 H 1.08012 * 119.99391 * 191.35128 * 17 16 14 36 36 H 1.08999 * 109.47604 * 258.20906 * 18 17 16 37 37 H 1.09009 * 109.46988 * 18.20750 * 18 17 16 38 38 H 1.09000 * 109.54072 * 29.83130 * 20 19 18 39 39 H 1.08998 * 109.52226 * 303.06081 * 21 20 19 40 40 H 1.09007 * 109.52202 * 63.24477 * 21 20 19 41 41 H 1.08999 * 109.47830 * 297.62748 * 22 21 20 42 42 H 1.09004 * 109.47683 * 177.59270 * 22 21 20 43 43 H 1.09008 * 109.47743 * 301.17337 * 24 23 22 44 44 H 1.08999 * 109.48908 * 181.15140 * 24 23 22 45 45 H 1.09001 * 109.52579 * 182.48614 * 25 24 23 46 46 H 1.09002 * 109.51799 * 62.30191 * 25 24 23 47 47 H 1.09000 * 109.49546 * 58.58492 * 26 12 11 48 48 H 1.09000 * 109.50266 * 178.68306 * 26 12 11 49 49 H 1.08998 * 109.58614 * 246.20480 * 27 9 7 50 50 H 1.08998 * 109.58407 * 6.48988 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8912 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0119 -1.2475 -0.4009 9 7 1.4251 -2.3305 0.5101 10 6 0.6828 -2.2818 1.7771 11 6 1.2442 -3.3517 2.7189 12 6 1.2053 -4.7124 2.0195 13 8 1.7063 -5.7342 2.9211 14 6 1.2061 -6.9775 2.7755 15 8 0.3738 -7.2011 1.9187 16 6 1.6625 -8.0610 3.6572 17 6 1.2380 -9.3061 3.4557 18 6 0.5028 -9.6558 2.1877 19 8 0.9633 -10.9186 1.7028 20 6 0.3258 -11.3459 0.4973 21 6 -0.9143 -12.1771 0.8401 22 6 -1.5453 -12.6958 -0.4547 23 8 -0.5814 -13.4632 -1.1786 24 6 0.5791 -12.7253 -1.5673 25 6 1.2954 -12.2078 -0.3173 26 6 2.0790 -4.6676 0.7637 27 6 1.5270 -3.6126 -0.2001 28 1 -0.4850 0.8399 -0.0004 29 1 -0.3730 -2.4775 1.5898 30 1 0.7970 -1.2980 2.2324 31 1 0.6406 -3.3914 3.6255 32 1 2.2739 -3.1051 2.9778 33 1 0.1785 -4.9473 1.7390 34 1 2.3423 -7.8468 4.4686 35 1 1.4205 -10.0661 4.2013 36 1 -0.5665 -9.7128 2.3915 37 1 0.6890 -8.8883 1.4363 38 1 0.0322 -10.4748 -0.0884 39 1 -0.6256 -13.0201 1.4678 40 1 -1.6340 -11.5551 1.3724 41 1 -1.8704 -11.8524 -1.0638 42 1 -2.4036 -13.3234 -0.2147 43 1 0.2817 -11.8823 -2.1911 44 1 1.2511 -13.3740 -2.1291 45 1 2.1560 -11.6077 -0.6128 46 1 1.6287 -13.0514 0.2870 47 1 3.1008 -4.4083 1.0406 48 1 2.0695 -5.6438 0.2789 49 1 0.5400 -3.9167 -0.5487 50 1 2.1986 -3.5060 -1.0520 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870245818.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:01 Heat of formation + Delta-G solvation = -159.898393 kcal Electronic energy + Delta-G solvation = -29618.540197 eV Core-core repulsion = 25418.237040 eV Total energy + Delta-G solvation = -4200.303157 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.70986 -40.62258 -39.33938 -38.52199 -37.36335 -35.00511 -34.60156 -33.18927 -32.14424 -32.09927 -31.67964 -28.30759 -27.00112 -25.30313 -24.75798 -24.45523 -23.95839 -23.13968 -21.54007 -21.13414 -20.54375 -18.95839 -18.79040 -18.07002 -17.50839 -17.24379 -17.02089 -16.84993 -16.65974 -16.33243 -15.91138 -15.62784 -15.53465 -15.14953 -14.97517 -14.89526 -14.71121 -14.39430 -14.29008 -14.20501 -13.81024 -13.37511 -13.30532 -13.18437 -13.12779 -12.79528 -12.65823 -12.52440 -12.46856 -12.30282 -12.21085 -12.05450 -12.02830 -11.87234 -11.46548 -11.42734 -11.17068 -11.10860 -10.73790 -10.68387 -10.56388 -10.31449 -8.63106 -7.92759 -5.57291 -0.00667 1.43572 1.47434 1.59083 1.70513 1.79815 2.46648 2.58003 2.91541 3.13586 3.52511 3.63298 3.69484 3.71060 3.78163 3.83268 3.91308 3.94461 4.06312 4.12954 4.20585 4.24460 4.33128 4.38222 4.41675 4.51901 4.53257 4.62193 4.65308 4.69936 4.72742 4.73704 4.79802 4.84952 4.93300 4.99761 5.03138 5.03735 5.06928 5.14941 5.16638 5.20625 5.26944 5.44576 5.63194 5.66944 6.11815 6.17337 6.41592 6.69985 7.08443 7.70353 8.36835 9.05567 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.017871 B = 0.002002 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.431627 B =13979.642341 C =14880.220794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.024 4.024 3 Si 0.961 3.039 4 H -0.264 1.264 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.288 4.288 8 H 0.056 0.944 9 N -0.603 5.603 10 C 0.180 3.820 11 C -0.120 4.120 12 C 0.107 3.893 13 O -0.350 6.350 14 C 0.478 3.522 15 O -0.534 6.534 16 C -0.189 4.189 17 C -0.032 4.032 18 C 0.055 3.945 19 O -0.390 6.390 20 C 0.083 3.917 21 C -0.173 4.173 22 C 0.060 3.940 23 O -0.400 6.400 24 C 0.061 3.939 25 C -0.149 4.149 26 C -0.131 4.131 27 C 0.147 3.853 28 H 0.255 0.745 29 H 0.005 0.995 30 H 0.047 0.953 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.177 0.823 35 H 0.176 0.824 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.056 0.944 42 H 0.112 0.888 43 H 0.058 0.942 44 H 0.116 0.884 45 H 0.083 0.917 46 H 0.077 0.923 47 H 0.070 0.930 48 H 0.066 0.934 49 H 0.008 0.992 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.273 -25.889 6.035 26.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.224 4.224 3 Si 0.787 3.213 4 H -0.188 1.188 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.418 4.418 8 H 0.074 0.926 9 N -0.327 5.327 10 C 0.054 3.946 11 C -0.159 4.159 12 C 0.052 3.948 13 O -0.267 6.267 14 C 0.327 3.673 15 O -0.428 6.428 16 C -0.208 4.208 17 C -0.051 4.051 18 C -0.020 4.020 19 O -0.310 6.310 20 C 0.025 3.975 21 C -0.211 4.211 22 C -0.016 4.016 23 O -0.319 6.319 24 C -0.015 4.015 25 C -0.187 4.187 26 C -0.170 4.170 27 C 0.022 3.978 28 H 0.064 0.936 29 H 0.023 0.977 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.194 0.806 35 H 0.193 0.807 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.130 0.870 43 H 0.076 0.924 44 H 0.134 0.866 45 H 0.102 0.898 46 H 0.096 0.904 47 H 0.089 0.911 48 H 0.085 0.915 49 H 0.026 0.974 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.034 -26.068 5.806 26.727 hybrid contribution -0.305 1.712 -0.284 1.762 sum 0.728 -24.356 5.522 24.985 Atomic orbital electron populations 1.70271 1.07343 1.26675 1.51458 1.26159 0.95561 1.02375 0.98273 0.85371 0.79207 0.79611 0.77113 1.18831 1.21545 1.21054 1.19202 0.95856 0.87357 1.39356 0.92647 1.44196 1.62928 1.05025 1.20571 1.20553 0.92733 0.95883 0.85448 1.22125 1.02907 0.92067 0.98779 1.22563 0.97661 0.85595 0.88967 1.86643 1.63774 1.18823 1.57455 1.22439 0.78930 0.83806 0.82141 1.90723 1.33387 1.82533 1.36128 1.22204 1.05446 0.90194 1.02929 1.23857 0.89563 0.96178 0.95460 1.22314 0.98221 0.85667 0.95831 1.87828 1.64170 1.37043 1.41930 1.22225 0.93155 0.96389 0.85694 1.22681 0.97854 1.01016 0.99539 1.22682 0.91585 0.96407 0.90973 1.87914 1.30813 1.38706 1.74447 1.22715 0.87045 0.96999 0.94774 1.22277 0.98911 1.00231 0.97280 1.22255 0.99952 0.99302 0.95504 1.20949 0.97188 0.85813 0.93868 0.93630 0.97738 0.93428 0.90053 0.90914 0.91625 0.80554 0.80692 0.91186 0.90295 0.92431 0.90398 0.90196 0.92547 0.87000 0.92416 0.86596 0.89816 0.90385 0.91091 0.91491 0.97391 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.12 12.99 21.65 0.28 -53.83 16 2 C -0.02 -1.34 4.70 84.86 0.40 -0.94 16 3 Si 0.96 43.83 29.62 68.60 2.03 45.86 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.29 -15.88 9.29 84.03 0.78 -15.10 16 8 H 0.06 3.04 7.95 -2.91 -0.02 3.02 16 9 N -0.60 -30.65 2.87 -699.10 -2.00 -32.66 16 10 C 0.18 8.43 5.56 86.36 0.48 8.92 16 11 C -0.12 -4.42 5.74 30.67 0.18 -4.24 16 12 C 0.11 3.80 2.42 30.62 0.07 3.87 16 13 O -0.35 -10.84 9.89 -57.12 -0.57 -11.41 16 14 C 0.48 13.29 7.72 70.11 0.54 13.84 16 15 O -0.53 -17.31 12.43 19.73 0.25 -17.07 16 16 C -0.19 -3.46 10.14 23.40 0.24 -3.23 16 17 C -0.03 -0.52 9.96 24.53 0.24 -0.27 16 18 C 0.05 1.13 5.11 71.23 0.36 1.49 16 19 O -0.39 -7.98 9.98 -148.98 -1.49 -9.47 16 20 C 0.08 1.49 2.70 30.71 0.08 1.57 16 21 C -0.17 -2.62 5.76 30.68 0.18 -2.44 16 22 C 0.06 0.84 6.84 72.01 0.49 1.34 16 23 O -0.40 -6.94 10.77 -148.98 -1.60 -8.54 16 24 C 0.06 0.85 6.84 72.01 0.49 1.34 16 25 C -0.15 -2.30 5.79 30.68 0.18 -2.13 16 26 C -0.13 -4.78 5.72 30.67 0.18 -4.61 16 27 C 0.15 6.49 6.52 86.36 0.56 7.05 16 28 H 0.25 14.36 8.31 -92.71 -0.77 13.58 16 29 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.05 2.39 7.44 -2.39 -0.02 2.38 16 31 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.07 2.53 7.16 -2.39 -0.02 2.52 16 34 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 35 H 0.18 1.62 8.06 -2.90 -0.02 1.59 16 36 H 0.07 1.39 7.99 -2.39 -0.02 1.37 16 37 H 0.08 2.07 5.08 -5.18 -0.03 2.05 16 38 H 0.06 1.11 7.79 -2.39 -0.02 1.09 16 39 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 1.13 7.99 -2.38 -0.02 1.11 16 41 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.11 1.20 8.14 -2.38 -0.02 1.19 16 43 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 44 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 48 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 49 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 50 H 0.06 2.63 7.93 -2.39 -0.02 2.61 16 Total: -1.00 -67.70 400.30 3.25 -64.45 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.89 Total: 16.21 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 5.46 Total: 6.45 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -1.72 Total: -86.49 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -3.41 Total: -46.48 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -67.70 3.25 -64.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870245818.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.444 kcal (2) G-P(sol) polarization free energy of solvation -67.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds