Wall clock time and date at job start Tue Mar 31 2020 22:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.54259 * 110.20042 * 2 1 4 4 S 1.84052 * 102.62443 * 262.61868 * 3 2 1 5 5 C 1.84053 * 94.38862 * 323.65697 * 4 3 2 6 6 C 1.54253 * 110.31926 * 235.97413 * 2 1 3 7 7 H 1.09003 * 110.28784 * 359.75226 * 6 2 1 8 8 C 1.54434 * 105.03871 * 241.02992 * 6 2 1 9 9 N 1.48167 * 104.55752 * 23.73304 * 8 6 2 10 10 C 1.34771 * 127.83752 * 140.52531 * 9 8 6 11 11 O 1.21586 * 120.00451 * 180.02562 * 10 9 8 12 12 N 1.34785 * 119.99707 * 0.02679 * 10 9 8 13 13 C 1.46501 * 119.99650 * 179.97438 * 12 10 9 14 14 C 1.53039 * 109.46094 * 275.06802 * 13 12 10 15 15 C 1.53192 * 109.31108 * 178.61761 * 14 13 12 16 16 N 1.46921 * 108.77739 * 54.63469 * 15 14 13 17 17 C 1.36939 * 120.62986 * 126.41050 * 16 15 14 18 18 H 1.08001 * 120.00233 * 207.66127 * 17 16 15 19 19 C 1.38809 * 120.00142 * 27.66920 * 17 16 15 20 20 N 1.31617 * 119.99927 * 17.35965 * 19 17 16 21 21 Si 1.86799 * 120.00017 * 197.36582 * 19 17 16 22 22 H 1.48500 * 109.47447 * 59.99479 * 21 19 17 23 23 H 1.48503 * 109.47198 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47087 * 299.99589 * 21 19 17 25 25 C 1.46929 * 118.74028 * 306.39291 * 16 15 14 26 26 C 1.53045 * 109.45650 * 155.00065 * 13 12 10 27 27 C 1.48171 * 104.33236 * 320.54838 * 9 8 6 28 28 H 1.08998 * 109.47551 * 58.98906 * 1 2 3 29 29 H 1.08999 * 109.47544 * 178.98755 * 1 2 3 30 30 H 1.08998 * 109.47305 * 298.98848 * 1 2 3 31 31 H 1.09005 * 110.81500 * 144.28397 * 3 2 1 32 32 H 1.08999 * 110.81506 * 20.95057 * 3 2 1 33 33 H 1.08998 * 110.81237 * 154.47879 * 5 4 3 34 34 H 1.08995 * 110.81544 * 277.80608 * 5 4 3 35 35 H 1.09002 * 110.42068 * 142.50253 * 8 6 2 36 36 H 1.09004 * 110.41902 * 264.84325 * 8 6 2 37 37 H 0.96998 * 120.00077 * 0.02562 * 12 10 9 38 38 H 1.09002 * 109.46024 * 35.02945 * 13 12 10 39 39 H 1.09000 * 109.49493 * 298.56773 * 14 13 12 40 40 H 1.08994 * 109.49992 * 58.66582 * 14 13 12 41 41 H 1.08996 * 109.58977 * 294.84570 * 15 14 13 42 42 H 1.08999 * 109.58568 * 174.42276 * 15 14 13 43 43 H 0.97005 * 119.99662 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.58178 * 293.82009 * 25 16 15 45 45 H 1.09001 * 109.70297 * 173.46622 * 25 16 15 46 46 H 1.09003 * 109.49537 * 301.33428 * 26 13 12 47 47 H 1.08998 * 109.49985 * 61.43704 * 26 13 12 48 48 H 1.09003 * 110.42086 * 158.22154 * 27 9 8 49 49 H 1.09004 * 110.41856 * 280.56203 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0626 1.4477 0.0000 4 16 2.4181 1.7455 -1.7811 5 6 2.9983 0.0279 -2.0981 6 6 2.0656 -0.8094 -1.1989 7 1 1.2381 -1.2101 -1.7844 8 6 2.8822 -1.9608 -0.5723 9 7 2.3200 -2.1179 0.7896 10 6 2.0872 -3.2631 1.4608 11 8 1.6172 -3.2262 2.5815 12 7 2.3754 -4.4494 0.8897 13 6 2.1228 -5.6943 1.6196 14 6 3.3161 -6.0050 2.5260 15 6 3.0337 -7.2886 3.3131 16 7 2.7005 -8.3608 2.3655 17 6 3.3769 -9.5511 2.3928 18 1 3.4733 -10.1383 1.4915 19 6 3.9384 -10.0033 3.5790 20 7 3.5492 -9.4928 4.7280 21 14 5.2468 -11.3361 3.5446 22 1 6.4116 -10.8661 2.7524 23 1 5.6818 -11.6387 4.9318 24 1 4.6874 -12.5628 2.9221 25 6 1.6275 -8.1317 1.3882 26 6 1.9257 -6.8387 0.6227 27 6 2.0713 -0.7303 1.2460 28 1 -0.3634 0.5294 -0.8807 29 1 -0.3634 -1.0275 -0.0182 30 1 -0.3634 0.4980 0.8989 31 1 2.9728 1.5256 0.5948 32 1 1.3034 2.1398 0.3643 33 1 2.8664 -0.2381 -3.1469 34 1 4.0395 -0.0908 -1.7982 35 1 2.7494 -2.8776 -1.1466 36 1 3.9380 -1.6944 -0.5215 37 1 2.7507 -4.4789 -0.0043 38 1 1.2247 -5.5832 2.2271 39 1 4.2098 -6.1408 1.9171 40 1 3.4703 -5.1791 3.2203 41 1 2.1949 -7.1253 3.9898 42 1 3.9182 -7.5684 3.8853 43 1 3.9419 -9.8085 5.5569 44 1 0.6741 -8.0371 1.9079 45 1 1.5818 -8.9675 0.6900 46 1 1.0902 -6.6060 -0.0377 47 1 2.8325 -6.9667 0.0317 48 1 1.3272 -0.7196 2.0425 49 1 2.9988 -0.2701 1.5870 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892879451.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:17 Heat of formation + Delta-G solvation = -1.444636 kcal Electronic energy + Delta-G solvation = -28162.268643 eV Core-core repulsion = 24443.882179 eV Total energy + Delta-G solvation = -3718.386464 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.73720 -39.00810 -37.25241 -34.43491 -34.03435 -32.30224 -31.99874 -30.03908 -29.47222 -28.01653 -26.65123 -26.58026 -24.72861 -22.83058 -22.21929 -21.84283 -20.00392 -19.42543 -19.33183 -17.99875 -16.79185 -16.64737 -16.37085 -15.98042 -15.62454 -14.91932 -14.76687 -14.50339 -14.29603 -13.89824 -13.67738 -13.49961 -13.33824 -13.12578 -13.01180 -12.86154 -12.64698 -12.43340 -12.32153 -12.23681 -12.03384 -11.55978 -11.48709 -11.42098 -11.18233 -11.10644 -10.93185 -10.71512 -10.39319 -10.34911 -10.24230 -10.07099 -9.95447 -9.75120 -9.55657 -8.99164 -8.59662 -8.38402 -8.13515 -6.68653 -5.77865 -3.20581 1.42238 1.78705 2.51511 3.28692 3.38506 3.44643 3.45387 3.76172 3.99523 4.07901 4.15114 4.34335 4.49586 4.49801 4.62553 4.73067 4.93569 5.05267 5.09907 5.15705 5.21960 5.28701 5.34868 5.40415 5.44202 5.46550 5.51497 5.56519 5.63802 5.65275 5.82199 5.83771 5.95225 6.09150 6.23884 6.36862 6.45430 6.60549 6.65602 6.78406 6.91112 6.95918 7.10914 7.40074 7.69424 7.79785 8.05328 8.45479 8.71707 9.21450 9.84911 10.41523 11.30641 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028682 B = 0.002184 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.002844 B =12817.838781 C =12987.820646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.074 4.074 3 C -0.055 4.055 4 S -0.296 6.296 5 C -0.060 4.060 6 C -0.097 4.097 7 H 0.099 0.901 8 C 0.108 3.892 9 N -0.644 5.644 10 C 0.726 3.274 11 O -0.583 6.583 12 N -0.737 5.737 13 C 0.169 3.831 14 C -0.146 4.146 15 C 0.174 3.826 16 N -0.592 5.592 17 C -0.255 4.255 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.901 5.901 21 Si 0.903 3.097 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.149 3.851 26 C -0.138 4.138 27 C 0.134 3.866 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.389 0.611 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.021 0.979 42 H 0.089 0.911 43 H 0.255 0.745 44 H 0.020 0.980 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.062 0.938 48 H 0.089 0.911 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.677 21.937 -14.347 26.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.077 4.077 3 C -0.203 4.203 4 S -0.068 6.068 5 C -0.208 4.208 6 C -0.118 4.118 7 H 0.117 0.883 8 C -0.017 4.017 9 N -0.383 5.383 10 C 0.428 3.572 11 O -0.460 6.460 12 N -0.390 5.390 13 C 0.065 3.935 14 C -0.187 4.187 15 C 0.047 3.953 16 N -0.315 5.315 17 C -0.385 4.385 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.732 3.268 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.022 3.978 26 C -0.178 4.178 27 C 0.009 3.991 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.222 0.778 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.039 0.961 42 H 0.108 0.892 43 H 0.065 0.935 44 H 0.038 0.962 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.081 0.919 48 H 0.107 0.893 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.113 22.767 -13.981 26.898 hybrid contribution 1.106 -1.566 0.218 1.929 sum -2.007 21.201 -13.762 25.356 Atomic orbital electron populations 1.21860 0.91944 1.02734 1.02546 1.22119 0.97742 0.92606 0.95239 1.24350 1.04411 0.97659 0.93922 1.88146 1.85987 1.19298 1.13348 1.24272 1.01598 0.91586 1.03375 1.22829 0.98218 0.95776 0.95011 0.88258 1.22530 0.97291 0.98379 0.83516 1.48050 1.68311 1.04892 1.17091 1.15428 0.78760 0.79326 0.83685 1.90947 1.51307 1.85599 1.18170 1.45546 1.68742 1.04855 1.19886 1.20936 0.99385 0.80184 0.92991 1.22577 0.96927 1.00334 0.98844 1.20765 1.00669 0.83600 0.90233 1.44104 1.37159 1.12955 1.37302 1.19127 1.28142 0.97739 0.93461 0.91687 1.25053 1.00919 0.98470 0.95197 1.70032 1.42664 1.45096 0.96711 0.86371 0.82116 0.81679 0.76591 1.21083 1.21636 1.20875 1.20830 0.91446 0.93458 0.92099 1.22344 1.00890 0.96698 0.97865 1.22339 1.00808 0.80060 0.95864 0.91577 0.91902 0.91908 0.88707 0.87310 0.87395 0.88670 0.90268 0.90779 0.77794 0.90060 0.92833 0.92850 0.96114 0.89248 0.93516 0.96176 0.92332 0.92708 0.91945 0.89299 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.93 8.07 37.16 0.30 -0.63 16 2 C -0.07 -0.50 0.85 -152.55 -0.13 -0.63 16 3 C -0.06 -0.34 6.48 37.82 0.25 -0.09 16 4 S -0.30 -2.24 23.27 -107.50 -2.50 -4.74 16 5 C -0.06 -0.33 6.94 37.82 0.26 -0.06 16 6 C -0.10 -0.60 3.12 -88.55 -0.28 -0.87 16 7 H 0.10 0.62 7.71 -51.93 -0.40 0.22 16 8 C 0.11 0.77 6.41 -2.37 -0.02 0.76 16 9 N -0.64 -7.09 3.32 -175.04 -0.58 -7.67 16 10 C 0.73 11.18 8.53 -86.92 -0.74 10.44 16 11 O -0.58 -11.62 16.27 5.29 0.09 -11.54 16 12 N -0.74 -10.54 5.05 -58.63 -0.30 -10.84 16 13 C 0.17 2.96 2.42 -67.89 -0.16 2.80 16 14 C -0.15 -2.96 5.65 -26.61 -0.15 -3.11 16 15 C 0.17 4.26 5.31 -3.71 -0.02 4.24 16 16 N -0.59 -14.79 2.99 -172.32 -0.52 -15.31 16 17 C -0.26 -6.95 9.59 -15.06 -0.14 -7.10 16 18 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 19 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 20 N -0.90 -26.39 11.19 55.49 0.62 -25.77 16 21 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.15 3.05 6.51 -3.71 -0.02 3.03 16 26 C -0.14 -2.27 5.55 -26.61 -0.15 -2.42 16 27 C 0.13 1.22 6.09 -2.47 -0.02 1.21 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.52 7.32 -51.93 -0.38 0.14 16 32 H 0.11 0.58 7.84 -51.93 -0.41 0.18 16 33 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.46 7.33 -51.93 -0.38 0.08 16 35 H 0.08 0.50 6.87 -51.93 -0.36 0.14 16 36 H 0.07 0.47 7.33 -51.93 -0.38 0.09 16 37 H 0.39 4.42 7.00 -40.82 -0.29 4.13 16 38 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 2.44 6.04 -51.93 -0.31 2.13 16 43 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 1.15 7.94 -51.93 -0.41 0.74 16 46 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.09 0.95 7.60 -51.93 -0.39 0.55 16 49 H 0.07 0.58 7.33 -51.93 -0.38 0.20 16 LS Contribution 384.94 15.07 5.80 5.80 Total: -1.00 -32.79 384.94 -11.79 -44.57 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -8.26 Total: 1.35 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -1.11 Total: 7.53 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -0.77 Total: -59.58 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Atomic # 16 Polarization: -2.24 SS G_CDS: -2.50 Total: -4.74 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.79 -11.79 -44.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892879451.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.127 kcal (2) G-P(sol) polarization free energy of solvation -32.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds