Wall clock time and date at job start Tue Mar 31 2020 22:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.54259 * 110.20042 * 2 1 4 4 S 1.84052 * 102.62443 * 262.61868 * 3 2 1 5 5 C 1.84053 * 94.38862 * 323.65697 * 4 3 2 6 6 C 1.54253 * 110.31926 * 235.97413 * 2 1 3 7 7 H 1.09003 * 110.28784 * 359.75226 * 6 2 1 8 8 C 1.54434 * 105.03871 * 241.02992 * 6 2 1 9 9 N 1.48167 * 104.55752 * 23.73304 * 8 6 2 10 10 C 1.34771 * 127.83752 * 140.52531 * 9 8 6 11 11 O 1.21586 * 120.00451 * 180.02562 * 10 9 8 12 12 N 1.34785 * 119.99707 * 0.02679 * 10 9 8 13 13 C 1.46501 * 119.99650 * 179.97438 * 12 10 9 14 14 C 1.53039 * 109.46094 * 275.06802 * 13 12 10 15 15 C 1.53192 * 109.31108 * 178.61761 * 14 13 12 16 16 N 1.46921 * 108.77739 * 54.63469 * 15 14 13 17 17 C 1.36939 * 120.62986 * 126.41050 * 16 15 14 18 18 H 1.08001 * 120.00233 * 207.66127 * 17 16 15 19 19 C 1.38809 * 120.00142 * 27.66920 * 17 16 15 20 20 N 1.31617 * 119.99927 * 17.35965 * 19 17 16 21 21 Si 1.86799 * 120.00017 * 197.36582 * 19 17 16 22 22 H 1.48500 * 109.47447 * 59.99479 * 21 19 17 23 23 H 1.48503 * 109.47198 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47087 * 299.99589 * 21 19 17 25 25 C 1.46929 * 118.74028 * 306.39291 * 16 15 14 26 26 C 1.53045 * 109.45650 * 155.00065 * 13 12 10 27 27 C 1.48171 * 104.33236 * 320.54838 * 9 8 6 28 28 H 1.08998 * 109.47551 * 58.98906 * 1 2 3 29 29 H 1.08999 * 109.47544 * 178.98755 * 1 2 3 30 30 H 1.08998 * 109.47305 * 298.98848 * 1 2 3 31 31 H 1.09005 * 110.81500 * 144.28397 * 3 2 1 32 32 H 1.08999 * 110.81506 * 20.95057 * 3 2 1 33 33 H 1.08998 * 110.81237 * 154.47879 * 5 4 3 34 34 H 1.08995 * 110.81544 * 277.80608 * 5 4 3 35 35 H 1.09002 * 110.42068 * 142.50253 * 8 6 2 36 36 H 1.09004 * 110.41902 * 264.84325 * 8 6 2 37 37 H 0.96998 * 120.00077 * 0.02562 * 12 10 9 38 38 H 1.09002 * 109.46024 * 35.02945 * 13 12 10 39 39 H 1.09000 * 109.49493 * 298.56773 * 14 13 12 40 40 H 1.08994 * 109.49992 * 58.66582 * 14 13 12 41 41 H 1.08996 * 109.58977 * 294.84570 * 15 14 13 42 42 H 1.08999 * 109.58568 * 174.42276 * 15 14 13 43 43 H 0.97005 * 119.99662 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.58178 * 293.82009 * 25 16 15 45 45 H 1.09001 * 109.70297 * 173.46622 * 25 16 15 46 46 H 1.09003 * 109.49537 * 301.33428 * 26 13 12 47 47 H 1.08998 * 109.49985 * 61.43704 * 26 13 12 48 48 H 1.09003 * 110.42086 * 158.22154 * 27 9 8 49 49 H 1.09004 * 110.41856 * 280.56203 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0626 1.4477 0.0000 4 16 2.4181 1.7455 -1.7811 5 6 2.9983 0.0279 -2.0981 6 6 2.0656 -0.8094 -1.1989 7 1 1.2381 -1.2101 -1.7844 8 6 2.8822 -1.9608 -0.5723 9 7 2.3200 -2.1179 0.7896 10 6 2.0872 -3.2631 1.4608 11 8 1.6172 -3.2262 2.5815 12 7 2.3754 -4.4494 0.8897 13 6 2.1228 -5.6943 1.6196 14 6 3.3161 -6.0050 2.5260 15 6 3.0337 -7.2886 3.3131 16 7 2.7005 -8.3608 2.3655 17 6 3.3769 -9.5511 2.3928 18 1 3.4733 -10.1383 1.4915 19 6 3.9384 -10.0033 3.5790 20 7 3.5492 -9.4928 4.7280 21 14 5.2468 -11.3361 3.5446 22 1 6.4116 -10.8661 2.7524 23 1 5.6818 -11.6387 4.9318 24 1 4.6874 -12.5628 2.9221 25 6 1.6275 -8.1317 1.3882 26 6 1.9257 -6.8387 0.6227 27 6 2.0713 -0.7303 1.2460 28 1 -0.3634 0.5294 -0.8807 29 1 -0.3634 -1.0275 -0.0182 30 1 -0.3634 0.4980 0.8989 31 1 2.9728 1.5256 0.5948 32 1 1.3034 2.1398 0.3643 33 1 2.8664 -0.2381 -3.1469 34 1 4.0395 -0.0908 -1.7982 35 1 2.7494 -2.8776 -1.1466 36 1 3.9380 -1.6944 -0.5215 37 1 2.7507 -4.4789 -0.0043 38 1 1.2247 -5.5832 2.2271 39 1 4.2098 -6.1408 1.9171 40 1 3.4703 -5.1791 3.2203 41 1 2.1949 -7.1253 3.9898 42 1 3.9182 -7.5684 3.8853 43 1 3.9419 -9.8085 5.5569 44 1 0.6741 -8.0371 1.9079 45 1 1.5818 -8.9675 0.6900 46 1 1.0902 -6.6060 -0.0377 47 1 2.8325 -6.9667 0.0317 48 1 1.3272 -0.7196 2.0425 49 1 2.9988 -0.2701 1.5870 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892879451.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:17 Heat of formation + Delta-G solvation = -21.406425 kcal Electronic energy + Delta-G solvation = -28163.134251 eV Core-core repulsion = 24443.882179 eV Total energy + Delta-G solvation = -3719.252072 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.64446 -40.10854 -38.79223 -36.00551 -34.99470 -33.73681 -32.84965 -31.74349 -31.16776 -28.56262 -27.74854 -27.16944 -26.42030 -23.92440 -23.73522 -23.19427 -21.26116 -20.88672 -19.99493 -19.17143 -18.55146 -17.46406 -17.20984 -16.91320 -16.81579 -16.29601 -15.85010 -15.58926 -15.37143 -15.33435 -15.28845 -14.76246 -14.45708 -14.26642 -14.13293 -13.84722 -13.65713 -13.55304 -13.18298 -13.03017 -12.97124 -12.86146 -12.67871 -12.59250 -12.55592 -12.15726 -12.11085 -12.06700 -11.97762 -11.85702 -11.72071 -11.54472 -11.45230 -11.25392 -10.73217 -10.57186 -10.18409 -9.58560 -8.71896 -8.70337 -7.86873 -5.32883 0.93088 1.30354 1.47718 1.49542 1.51789 1.57538 2.11951 2.52263 2.91834 3.28910 3.35822 3.46694 3.54362 3.66816 3.79112 3.87658 3.98523 4.09118 4.10149 4.19583 4.33561 4.45351 4.47518 4.49389 4.60837 4.66617 4.67603 4.68334 4.75385 4.79194 4.81196 4.85736 4.93532 5.00077 5.02380 5.06213 5.08110 5.13178 5.23185 5.31046 5.31961 5.45792 5.58811 5.64280 5.69760 6.05317 6.38706 6.98402 7.13526 7.56584 7.84709 8.37483 9.20151 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028682 B = 0.002184 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.002844 B =12817.838781 C =12987.820646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.065 4.065 3 C -0.044 4.044 4 S -0.339 6.339 5 C -0.046 4.046 6 C -0.090 4.090 7 H 0.103 0.897 8 C 0.104 3.896 9 N -0.641 5.641 10 C 0.721 3.279 11 O -0.637 6.637 12 N -0.723 5.723 13 C 0.182 3.818 14 C -0.129 4.129 15 C 0.183 3.817 16 N -0.609 5.609 17 C -0.261 4.261 18 H 0.075 0.925 19 C -0.056 4.056 20 N -0.939 5.939 21 Si 0.970 3.030 22 H -0.276 1.276 23 H -0.298 1.298 24 H -0.272 1.272 25 C 0.141 3.859 26 C -0.119 4.119 27 C 0.130 3.870 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.408 0.592 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.041 0.959 41 H -0.012 1.012 42 H 0.055 0.945 43 H 0.249 0.751 44 H 0.011 0.989 45 H 0.069 0.931 46 H 0.091 0.909 47 H 0.076 0.924 48 H 0.067 0.933 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.779 22.669 -17.672 28.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.068 4.068 3 C -0.193 4.193 4 S -0.111 6.111 5 C -0.194 4.194 6 C -0.111 4.111 7 H 0.122 0.878 8 C -0.019 4.019 9 N -0.379 5.379 10 C 0.423 3.577 11 O -0.518 6.518 12 N -0.377 5.377 13 C 0.076 3.924 14 C -0.169 4.169 15 C 0.056 3.944 16 N -0.333 5.333 17 C -0.391 4.391 18 H 0.093 0.907 19 C -0.251 4.251 20 N -0.585 5.585 21 Si 0.798 3.202 22 H -0.202 1.202 23 H -0.225 1.225 24 H -0.198 1.198 25 C 0.015 3.985 26 C -0.159 4.159 27 C 0.006 3.994 28 H 0.091 0.909 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.133 0.867 33 H 0.141 0.859 34 H 0.125 0.875 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.245 0.755 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.060 0.940 41 H 0.006 0.994 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.029 0.971 45 H 0.088 0.912 46 H 0.109 0.891 47 H 0.095 0.905 48 H 0.086 0.914 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.207 23.548 -17.412 29.369 hybrid contribution 0.766 -1.726 1.242 2.260 sum -1.441 21.822 -16.170 27.198 Atomic orbital electron populations 1.21822 0.92180 1.01797 1.02948 1.22054 0.97454 0.92910 0.94408 1.24326 1.04951 0.97032 0.92952 1.88358 1.86355 1.21651 1.14713 1.24315 1.01811 0.89216 1.04035 1.22780 0.98392 0.95265 0.94668 0.87836 1.22833 0.98118 0.99626 0.81339 1.48009 1.67228 1.04192 1.18428 1.15579 0.78494 0.80377 0.83251 1.90915 1.53615 1.86528 1.20762 1.45099 1.68781 1.03535 1.20332 1.20517 0.96716 0.82158 0.92991 1.22307 0.98512 0.97402 0.98707 1.20463 0.97801 0.85728 0.90384 1.44352 1.38486 1.12491 1.37938 1.19543 1.27725 0.98223 0.93651 0.90739 1.25881 1.03167 1.01121 0.94899 1.70212 1.44135 1.47008 0.97165 0.85305 0.79560 0.79289 0.76080 1.20214 1.22470 1.19797 1.21044 0.89745 0.96146 0.91536 1.22128 1.02997 0.93563 0.97191 1.22504 1.01000 0.79435 0.96509 0.90884 0.93451 0.91827 0.87885 0.86687 0.85945 0.87482 0.88663 0.89069 0.75509 0.92804 0.92062 0.93999 0.99414 0.92635 0.94197 0.97117 0.91213 0.89077 0.90527 0.91426 0.89917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 8.07 71.98 0.58 -1.08 16 2 C -0.07 -0.76 0.85 -50.91 -0.04 -0.80 16 3 C -0.04 -0.45 6.48 72.41 0.47 0.02 16 4 S -0.34 -4.38 23.27 -56.49 -1.31 -5.70 16 5 C -0.05 -0.34 6.94 72.41 0.50 0.16 16 6 C -0.09 -0.82 3.12 -9.45 -0.03 -0.85 16 7 H 0.10 0.93 7.71 -2.39 -0.02 0.92 16 8 C 0.10 1.13 6.41 86.55 0.55 1.68 16 9 N -0.64 -12.94 3.32 -825.96 -2.74 -15.68 16 10 C 0.72 21.57 8.53 179.05 1.53 23.10 16 11 O -0.64 -25.96 16.27 -3.99 -0.06 -26.03 16 12 N -0.72 -19.20 5.05 -457.67 -2.31 -21.51 16 13 C 0.18 6.21 2.42 45.02 0.11 6.32 16 14 C -0.13 -5.26 5.65 30.67 0.17 -5.08 16 15 C 0.18 9.34 5.31 86.36 0.46 9.79 16 16 N -0.61 -30.67 2.99 -699.11 -2.09 -32.76 16 17 C -0.26 -14.24 9.59 84.03 0.81 -13.44 16 18 H 0.07 3.85 7.89 -2.91 -0.02 3.83 16 19 C -0.06 -3.13 4.91 84.86 0.42 -2.72 16 20 N -0.94 -57.04 11.19 21.65 0.24 -56.80 16 21 Si 0.97 44.86 29.59 68.60 2.03 46.89 16 22 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 23 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 25 C 0.14 5.63 6.51 86.36 0.56 6.20 16 26 C -0.12 -3.61 5.55 30.67 0.17 -3.44 16 27 C 0.13 2.21 6.09 86.48 0.53 2.73 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.10 0.90 7.32 -2.38 -0.02 0.88 16 32 H 0.11 1.03 7.84 -2.39 -0.02 1.01 16 33 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.11 0.59 7.33 -2.39 -0.02 0.57 16 35 H 0.10 0.77 6.87 -2.39 -0.02 0.75 16 36 H 0.09 0.76 7.33 -2.39 -0.02 0.75 16 37 H 0.41 7.75 7.00 -92.71 -0.65 7.10 16 38 H 0.05 2.18 7.58 -2.39 -0.02 2.16 16 39 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 41 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 42 H 0.06 3.19 6.04 -2.39 -0.01 3.18 16 43 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 44 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.07 2.61 7.94 -2.39 -0.02 2.59 16 46 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 47 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 48 H 0.07 1.46 7.60 -2.39 -0.02 1.44 16 49 H 0.08 1.21 7.33 -2.38 -0.02 1.20 16 Total: -1.00 -74.69 384.94 0.82 -73.86 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.29 Total: 15.12 kcal Atomic # 6 Polarization: 15.82 SS G_CDS: 6.78 Total: 22.61 kcal Atomic # 7 Polarization: -119.85 SS G_CDS: -6.90 Total: -126.75 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.06 Total: -26.03 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: -4.38 SS G_CDS: -1.31 Total: -5.70 kcal Total: -74.69 0.82 -73.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892879451.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.458 kcal (2) G-P(sol) polarization free energy of solvation -74.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds