Wall clock time and date at job start Tue Mar 31 2020 22:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99867 * 2 1 4 4 H 1.48506 * 109.47153 * 269.99693 * 3 2 1 5 5 H 1.48500 * 109.47213 * 29.99305 * 3 2 1 6 6 H 1.48499 * 109.47341 * 149.99718 * 3 2 1 7 7 C 1.37880 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99792 * 0.02562 * 7 2 1 9 9 C 1.50692 * 119.99982 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47461 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47510 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47058 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47101 * 179.97438 * 12 11 10 14 14 O 1.20830 * 119.99672 * 359.97438 * 13 12 11 15 15 O 1.34221 * 120.00036 * 179.97438 * 13 12 11 16 16 C 1.45202 * 117.00213 * 179.97438 * 15 13 12 17 17 H 1.09002 * 109.59918 * 29.67609 * 16 15 13 18 18 C 1.52912 * 109.73770 * 269.27144 * 16 15 13 19 19 N 1.45752 * 110.48563 * 189.39083 * 18 16 15 20 20 C 1.33348 * 124.09988 * 19.09278 * 19 18 16 21 21 O 1.21284 * 118.23598 * 178.06950 * 20 19 18 22 22 C 1.50186 * 123.51668 * 357.78372 * 20 19 18 23 23 C 1.53182 * 109.62330 * 257.33512 * 22 20 19 24 24 C 1.53100 * 109.13692 * 297.10700 * 23 22 20 25 25 O 1.42888 * 109.42087 * 302.38650 * 24 23 22 26 26 C 1.42908 * 114.13291 * 61.10340 * 25 24 23 27 27 C 1.53095 * 109.40496 * 298.88393 * 26 25 24 28 28 C 1.53058 * 109.89397 * 17.54857 * 22 20 19 29 29 H 0.96995 * 120.00066 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47184 * 59.99995 * 9 7 2 31 31 H 1.09000 * 109.47247 * 300.00575 * 9 7 2 32 32 H 1.09003 * 109.47192 * 59.99673 * 10 9 7 33 33 H 1.08998 * 109.46662 * 300.00041 * 10 9 7 34 34 H 1.08996 * 109.47432 * 59.99884 * 11 10 9 35 35 H 1.09008 * 109.47026 * 299.99485 * 11 10 9 36 36 H 1.08996 * 109.47312 * 59.99544 * 12 11 10 37 37 H 1.08998 * 109.46671 * 299.99527 * 12 11 10 38 38 H 1.09007 * 109.30016 * 309.70002 * 18 16 15 39 39 H 1.09004 * 109.30569 * 69.28044 * 18 16 15 40 40 H 0.97002 * 117.94727 * 199.11883 * 19 18 16 41 41 H 1.09002 * 109.52879 * 56.99991 * 23 22 20 42 42 H 1.08999 * 109.52899 * 177.20893 * 23 22 20 43 43 H 1.08996 * 109.48305 * 182.40002 * 24 23 22 44 44 H 1.09001 * 109.48966 * 62.36979 * 24 23 22 45 45 H 1.09001 * 109.48428 * 178.90167 * 26 25 24 46 46 H 1.08997 * 109.48406 * 58.86197 * 26 25 24 47 47 H 1.09003 * 109.52715 * 297.74105 * 27 26 25 48 48 H 1.09006 * 109.52919 * 177.54465 * 27 26 25 49 49 H 1.08995 * 109.64559 * 70.81715 * 28 22 20 50 50 H 1.09003 * 109.64167 * 191.24482 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5516 -2.6364 0.0022 12 6 6.0616 -4.0790 0.0015 13 6 7.5686 -4.0789 0.0020 14 8 8.1727 -3.0325 0.0025 15 8 8.2398 -5.2413 0.0020 16 6 9.6898 -5.1653 0.0020 17 1 10.0083 -4.2553 0.5104 18 6 10.2065 -5.1566 -1.4371 19 7 11.6563 -5.3040 -1.4595 20 6 12.3747 -5.7844 -0.4439 21 8 13.5736 -5.8944 -0.5906 22 6 11.7796 -6.1908 0.8737 23 6 12.0489 -5.1023 1.9174 24 6 13.5599 -4.9693 2.1254 25 8 14.0966 -6.2303 2.5297 26 6 13.9150 -7.2764 1.5732 27 6 12.4182 -7.5015 1.3436 28 6 10.2691 -6.3877 0.7244 29 1 -0.4850 0.8400 -0.0004 30 1 3.8745 -0.6800 0.8911 31 1 3.8752 -0.6803 -0.8888 32 1 3.6586 -3.1502 -0.8892 33 1 3.6580 -3.1505 0.8907 34 1 5.9142 -2.1229 0.8926 35 1 5.9156 -2.1223 -0.8874 36 1 5.6990 -4.5921 -0.8891 37 1 5.6976 -4.5934 0.8908 38 1 9.7520 -5.9801 -1.9881 39 1 9.9359 -4.2132 -1.9114 40 1 12.1282 -5.0355 -2.2633 41 1 11.6446 -4.1529 1.5663 42 1 11.5741 -5.3755 2.8597 43 1 13.7565 -4.2261 2.8980 44 1 14.0293 -4.6569 1.1926 45 1 14.3674 -8.1945 1.9481 46 1 14.3887 -6.9953 0.6327 47 1 11.9507 -7.8212 2.2750 48 1 12.2776 -8.2689 0.5823 49 1 10.0727 -7.2861 0.1393 50 1 9.8131 -6.4851 1.7097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893600921.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:59 Heat of formation + Delta-G solvation = -187.238812 kcal Electronic energy + Delta-G solvation = -29937.869807 eV Core-core repulsion = 25736.381081 eV Total energy + Delta-G solvation = -4201.488726 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.01909 -40.69930 -38.58062 -37.65702 -36.07384 -35.21674 -34.90283 -32.71660 -31.59875 -31.07842 -30.17447 -28.15455 -26.38215 -24.52955 -24.22245 -23.61050 -22.69030 -21.58514 -20.64421 -20.16897 -19.19325 -18.23276 -17.56201 -17.01561 -16.65882 -16.53810 -16.37663 -16.34651 -16.03695 -15.66673 -15.14439 -15.01846 -14.73658 -14.46478 -14.25739 -13.99981 -13.69213 -13.14216 -12.96985 -12.89865 -12.72905 -12.69068 -12.60664 -12.34007 -12.24849 -11.98344 -11.85202 -11.63213 -11.24383 -11.19195 -11.02125 -10.97198 -10.88143 -10.68369 -10.65805 -10.12461 -9.94162 -9.74928 -9.66560 -9.60365 -9.46030 -9.19532 -8.54906 -6.05711 -4.03773 1.99216 2.02860 2.15066 2.69416 3.30250 3.37911 3.42329 3.59052 3.81015 3.82856 3.90612 4.04242 4.26858 4.37544 4.42637 4.44547 4.57822 4.67496 4.90439 4.92361 4.94439 5.00127 5.07154 5.08985 5.09824 5.18413 5.25051 5.28719 5.32882 5.35524 5.42790 5.54817 5.57466 5.60929 5.77981 5.84868 5.94631 6.11399 6.17745 6.24190 6.52587 6.66438 6.69827 6.87902 6.91298 7.28531 7.41322 7.53105 7.63794 7.78436 8.52155 8.99020 9.57144 11.07669 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.026067 B = 0.001795 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.891595 B =15595.466857 C =15747.755038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.102 4.102 11 C -0.112 4.112 12 C -0.112 4.112 13 C 0.459 3.541 14 O -0.502 6.502 15 O -0.346 6.346 16 C 0.072 3.928 17 H 0.098 0.902 18 C 0.092 3.908 19 N -0.709 5.709 20 C 0.526 3.474 21 O -0.539 6.539 22 C -0.069 4.069 23 C -0.143 4.143 24 C 0.057 3.943 25 O -0.381 6.381 26 C 0.039 3.961 27 C -0.130 4.130 28 C -0.112 4.112 29 H 0.263 0.737 30 H 0.016 0.984 31 H 0.011 0.989 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.406 0.594 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.063 0.937 45 H 0.088 0.912 46 H 0.095 0.905 47 H 0.083 0.917 48 H 0.077 0.923 49 H 0.086 0.914 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.174 -16.973 0.399 32.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.090 0.910 9 C -0.052 4.052 10 C -0.140 4.140 11 C -0.149 4.149 12 C -0.149 4.149 13 C 0.303 3.697 14 O -0.388 6.388 15 O -0.263 6.263 16 C 0.016 3.984 17 H 0.116 0.884 18 C -0.033 4.033 19 N -0.363 5.363 20 C 0.313 3.687 21 O -0.418 6.418 22 C -0.073 4.073 23 C -0.181 4.181 24 C -0.020 4.020 25 O -0.299 6.299 26 C -0.037 4.037 27 C -0.168 4.168 28 C -0.150 4.150 29 H 0.072 0.928 30 H 0.034 0.966 31 H 0.030 0.970 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.243 0.757 41 H 0.096 0.904 42 H 0.108 0.892 43 H 0.112 0.888 44 H 0.081 0.919 45 H 0.106 0.894 46 H 0.113 0.887 47 H 0.102 0.898 48 H 0.095 0.905 49 H 0.105 0.895 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 27.803 -16.692 0.705 32.436 hybrid contribution 0.105 1.196 -0.721 1.401 sum 27.908 -15.495 -0.016 31.922 Atomic orbital electron populations 1.69915 1.06298 1.26882 1.51223 1.25047 0.94746 0.99229 0.94584 0.86776 0.80390 0.83592 0.78522 1.20319 1.21410 1.18964 1.21158 0.89566 0.94432 1.50760 0.91040 1.19573 0.97048 0.92266 0.96358 1.21477 0.90971 1.00228 1.01331 1.21621 0.97924 0.92167 1.03213 1.21621 0.85176 1.02170 1.05934 1.24371 0.92397 0.81327 0.71631 1.90679 1.70383 1.32800 1.44971 1.86640 1.19768 1.35588 1.84266 1.22808 0.78409 1.01199 0.95974 0.88447 1.21751 0.80368 1.03859 0.97314 1.45335 1.07624 1.65006 1.18298 1.20041 0.86948 0.76398 0.85350 1.90628 1.14781 1.54279 1.82074 1.20653 0.95041 0.98623 0.92942 1.22301 0.99130 0.97980 0.98715 1.22616 0.91508 0.86435 1.01398 1.87884 1.79419 1.18546 1.44080 1.23084 0.94384 0.90756 0.95457 1.22107 0.97894 0.94444 1.02378 1.21887 0.92731 0.97497 1.02864 0.92759 0.96582 0.97037 0.92545 0.92516 0.91484 0.91518 0.87515 0.87510 0.89993 0.89419 0.75712 0.90377 0.89186 0.88751 0.91926 0.89384 0.88727 0.89819 0.90464 0.89525 0.88851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 2 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.52 -14.68 9.66 -34.44 -0.33 -15.01 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.73 16 9 C -0.02 -0.35 4.04 -27.89 -0.11 -0.46 16 10 C -0.10 -1.85 5.15 -26.73 -0.14 -1.99 16 11 C -0.11 -1.64 4.50 -26.73 -0.12 -1.76 16 12 C -0.11 -1.20 5.81 -27.88 -0.16 -1.37 16 13 C 0.46 5.20 7.94 36.01 0.29 5.49 16 14 O -0.50 -7.09 15.20 -18.75 -0.29 -7.38 16 15 O -0.35 -3.20 9.90 -39.23 -0.39 -3.59 16 16 C 0.07 0.56 2.48 -26.60 -0.07 0.50 16 17 H 0.10 0.89 5.54 -51.93 -0.29 0.60 16 18 C 0.09 0.61 6.82 -4.49 -0.03 0.58 16 19 N -0.71 -4.91 5.45 -61.39 -0.33 -5.25 16 20 C 0.53 4.49 6.25 -11.87 -0.07 4.42 16 21 O -0.54 -5.96 12.43 5.55 0.07 -5.90 16 22 C -0.07 -0.49 0.53 -155.69 -0.08 -0.58 16 23 C -0.14 -1.06 4.67 -26.59 -0.12 -1.18 16 24 C 0.06 0.50 6.56 37.21 0.24 0.74 16 25 O -0.38 -3.85 10.76 -35.23 -0.38 -4.23 16 26 C 0.04 0.33 6.54 37.21 0.24 0.58 16 27 C -0.13 -0.88 4.85 -26.58 -0.13 -1.00 16 28 C -0.11 -0.70 4.43 -26.52 -0.12 -0.82 16 29 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 31 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 35 H 0.07 1.02 8.10 -51.92 -0.42 0.59 16 36 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.41 2.39 8.80 -40.82 -0.36 2.03 16 41 H 0.08 0.57 6.73 -51.93 -0.35 0.22 16 42 H 0.09 0.60 8.13 -51.93 -0.42 0.18 16 43 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.62 6.31 -51.93 -0.33 0.29 16 45 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.10 0.96 5.14 -51.93 -0.27 0.69 16 47 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.09 0.48 8.10 -51.93 -0.42 0.06 16 50 H 0.09 0.54 8.09 -51.93 -0.42 0.12 16 LS Contribution 387.16 15.07 5.83 5.83 Total: -1.00 -33.73 387.16 -8.47 -42.20 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -8.28 Total: -1.69 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -0.81 Total: -10.09 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: 0.44 Total: -32.23 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.98 Total: -21.09 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.73 -8.47 -42.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893600921.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.037 kcal (2) G-P(sol) polarization free energy of solvation -33.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds