Wall clock time and date at job start Tue Mar 31 2020 22:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99867 * 2 1 4 4 H 1.48506 * 109.47153 * 269.99693 * 3 2 1 5 5 H 1.48500 * 109.47213 * 29.99305 * 3 2 1 6 6 H 1.48499 * 109.47341 * 149.99718 * 3 2 1 7 7 C 1.37880 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99792 * 0.02562 * 7 2 1 9 9 C 1.50692 * 119.99982 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47461 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47510 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47058 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47101 * 179.97438 * 12 11 10 14 14 O 1.20830 * 119.99672 * 359.97438 * 13 12 11 15 15 O 1.34221 * 120.00036 * 179.97438 * 13 12 11 16 16 C 1.45202 * 117.00213 * 179.97438 * 15 13 12 17 17 H 1.09002 * 109.59918 * 29.67609 * 16 15 13 18 18 C 1.52912 * 109.73770 * 269.27144 * 16 15 13 19 19 N 1.45752 * 110.48563 * 189.39083 * 18 16 15 20 20 C 1.33348 * 124.09988 * 19.09278 * 19 18 16 21 21 O 1.21284 * 118.23598 * 178.06950 * 20 19 18 22 22 C 1.50186 * 123.51668 * 357.78372 * 20 19 18 23 23 C 1.53182 * 109.62330 * 257.33512 * 22 20 19 24 24 C 1.53100 * 109.13692 * 297.10700 * 23 22 20 25 25 O 1.42888 * 109.42087 * 302.38650 * 24 23 22 26 26 C 1.42908 * 114.13291 * 61.10340 * 25 24 23 27 27 C 1.53095 * 109.40496 * 298.88393 * 26 25 24 28 28 C 1.53058 * 109.89397 * 17.54857 * 22 20 19 29 29 H 0.96995 * 120.00066 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47184 * 59.99995 * 9 7 2 31 31 H 1.09000 * 109.47247 * 300.00575 * 9 7 2 32 32 H 1.09003 * 109.47192 * 59.99673 * 10 9 7 33 33 H 1.08998 * 109.46662 * 300.00041 * 10 9 7 34 34 H 1.08996 * 109.47432 * 59.99884 * 11 10 9 35 35 H 1.09008 * 109.47026 * 299.99485 * 11 10 9 36 36 H 1.08996 * 109.47312 * 59.99544 * 12 11 10 37 37 H 1.08998 * 109.46671 * 299.99527 * 12 11 10 38 38 H 1.09007 * 109.30016 * 309.70002 * 18 16 15 39 39 H 1.09004 * 109.30569 * 69.28044 * 18 16 15 40 40 H 0.97002 * 117.94727 * 199.11883 * 19 18 16 41 41 H 1.09002 * 109.52879 * 56.99991 * 23 22 20 42 42 H 1.08999 * 109.52899 * 177.20893 * 23 22 20 43 43 H 1.08996 * 109.48305 * 182.40002 * 24 23 22 44 44 H 1.09001 * 109.48966 * 62.36979 * 24 23 22 45 45 H 1.09001 * 109.48428 * 178.90167 * 26 25 24 46 46 H 1.08997 * 109.48406 * 58.86197 * 26 25 24 47 47 H 1.09003 * 109.52715 * 297.74105 * 27 26 25 48 48 H 1.09006 * 109.52919 * 177.54465 * 27 26 25 49 49 H 1.08995 * 109.64559 * 70.81715 * 28 22 20 50 50 H 1.09003 * 109.64167 * 191.24482 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5516 -2.6364 0.0022 12 6 6.0616 -4.0790 0.0015 13 6 7.5686 -4.0789 0.0020 14 8 8.1727 -3.0325 0.0025 15 8 8.2398 -5.2413 0.0020 16 6 9.6898 -5.1653 0.0020 17 1 10.0083 -4.2553 0.5104 18 6 10.2065 -5.1566 -1.4371 19 7 11.6563 -5.3040 -1.4595 20 6 12.3747 -5.7844 -0.4439 21 8 13.5736 -5.8944 -0.5906 22 6 11.7796 -6.1908 0.8737 23 6 12.0489 -5.1023 1.9174 24 6 13.5599 -4.9693 2.1254 25 8 14.0966 -6.2303 2.5297 26 6 13.9150 -7.2764 1.5732 27 6 12.4182 -7.5015 1.3436 28 6 10.2691 -6.3877 0.7244 29 1 -0.4850 0.8400 -0.0004 30 1 3.8745 -0.6800 0.8911 31 1 3.8752 -0.6803 -0.8888 32 1 3.6586 -3.1502 -0.8892 33 1 3.6580 -3.1505 0.8907 34 1 5.9142 -2.1229 0.8926 35 1 5.9156 -2.1223 -0.8874 36 1 5.6990 -4.5921 -0.8891 37 1 5.6976 -4.5934 0.8908 38 1 9.7520 -5.9801 -1.9881 39 1 9.9359 -4.2132 -1.9114 40 1 12.1282 -5.0355 -2.2633 41 1 11.6446 -4.1529 1.5663 42 1 11.5741 -5.3755 2.8597 43 1 13.7565 -4.2261 2.8980 44 1 14.0293 -4.6569 1.1926 45 1 14.3674 -8.1945 1.9481 46 1 14.3887 -6.9953 0.6327 47 1 11.9507 -7.8212 2.2750 48 1 12.2776 -8.2689 0.5823 49 1 10.0727 -7.2861 0.1393 50 1 9.8131 -6.4851 1.7097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893600921.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:58 Heat of formation + Delta-G solvation = -209.423330 kcal Electronic energy + Delta-G solvation = -29938.831800 eV Core-core repulsion = 25736.381081 eV Total energy + Delta-G solvation = -4202.450719 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.64680 -41.51353 -39.24358 -38.43656 -36.88587 -36.57885 -35.50083 -34.63281 -32.22300 -32.18018 -31.28678 -28.76316 -27.88867 -25.24212 -24.81411 -24.49256 -23.77969 -22.38449 -21.82313 -21.44967 -19.79482 -19.02807 -18.78678 -18.25971 -17.74316 -17.22648 -17.14282 -17.03972 -16.74747 -16.39810 -16.25747 -15.99864 -15.77078 -15.38171 -15.20161 -14.85305 -14.68034 -14.40778 -14.09766 -13.83965 -13.64586 -13.54575 -13.50732 -13.35759 -13.26275 -12.95785 -12.84312 -12.60164 -12.35174 -12.24657 -12.10574 -11.91866 -11.75185 -11.66827 -11.62166 -11.56367 -11.36241 -11.30177 -11.22008 -10.74653 -10.74273 -10.26075 -10.13493 -8.28190 -6.31265 1.15412 1.35896 1.37025 1.37821 1.43282 1.49723 2.10609 2.36816 2.96124 3.07443 3.21988 3.27187 3.33178 3.45754 3.68464 3.74826 3.87429 3.92338 3.99223 4.04693 4.13030 4.31241 4.38264 4.44243 4.47751 4.53281 4.55301 4.63378 4.63775 4.70306 4.78079 4.78416 4.82598 4.83817 4.90269 4.97323 5.02263 5.12540 5.18004 5.19492 5.23910 5.38836 5.62234 5.63100 5.67202 5.70342 6.09930 6.25275 6.31104 6.70154 6.77572 7.02845 7.33555 8.88311 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.026067 B = 0.001795 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.891595 B =15595.466857 C =15747.755038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.002 3.998 3 Si 0.948 3.052 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.249 1.249 7 C -0.530 4.530 8 H 0.037 0.963 9 C -0.018 4.018 10 C -0.095 4.095 11 C -0.102 4.102 12 C -0.106 4.106 13 C 0.467 3.533 14 O -0.535 6.535 15 O -0.336 6.336 16 C 0.068 3.932 17 H 0.084 0.916 18 C 0.094 3.906 19 N -0.703 5.703 20 C 0.521 3.479 21 O -0.569 6.569 22 C -0.067 4.067 23 C -0.141 4.141 24 C 0.055 3.945 25 O -0.398 6.398 26 C 0.035 3.965 27 C -0.126 4.126 28 C -0.104 4.104 29 H 0.265 0.735 30 H 0.015 0.985 31 H 0.015 0.985 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.410 0.590 41 H 0.076 0.924 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.044 0.956 45 H 0.101 0.899 46 H 0.075 0.925 47 H 0.097 0.903 48 H 0.088 0.912 49 H 0.100 0.900 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.147 -17.827 0.509 33.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.195 4.195 3 Si 0.771 3.229 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.173 1.173 7 C -0.568 4.568 8 H 0.055 0.945 9 C -0.055 4.055 10 C -0.133 4.133 11 C -0.140 4.140 12 C -0.143 4.143 13 C 0.311 3.689 14 O -0.424 6.424 15 O -0.252 6.252 16 C 0.012 3.988 17 H 0.102 0.898 18 C -0.030 4.030 19 N -0.356 5.356 20 C 0.308 3.692 21 O -0.450 6.450 22 C -0.070 4.070 23 C -0.178 4.178 24 C -0.022 4.022 25 O -0.317 6.317 26 C -0.041 4.041 27 C -0.164 4.164 28 C -0.142 4.142 29 H 0.074 0.926 30 H 0.034 0.966 31 H 0.033 0.967 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.118 0.882 39 H 0.103 0.897 40 H 0.248 0.752 41 H 0.094 0.906 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.062 0.938 45 H 0.119 0.881 46 H 0.093 0.907 47 H 0.116 0.884 48 H 0.107 0.893 49 H 0.119 0.881 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 28.776 -17.572 0.802 33.726 hybrid contribution -0.211 1.397 -0.773 1.611 sum 28.565 -16.175 0.028 32.826 Atomic orbital electron populations 1.70064 1.08183 1.28032 1.52938 1.26016 0.95611 1.03464 0.94398 0.85692 0.79452 0.78578 0.79128 1.19271 1.21064 1.17301 1.21563 0.92266 0.93144 1.49823 0.94476 1.19583 0.93752 0.95928 0.96255 1.21332 0.93460 0.96777 1.01702 1.21393 0.95132 0.94941 1.02541 1.21517 0.84966 0.99714 1.08122 1.24341 0.92522 0.81253 0.70746 1.90682 1.71038 1.34000 1.46641 1.86616 1.20514 1.34319 1.83770 1.22937 0.77551 1.01489 0.96790 0.89788 1.21774 0.79968 1.04474 0.96802 1.45320 1.07850 1.64223 1.18187 1.20353 0.86654 0.76154 0.86008 1.90633 1.16074 1.55625 1.82643 1.20651 0.95645 0.98727 0.91973 1.22282 0.98045 0.98148 0.99365 1.22655 0.92379 0.86284 1.00852 1.87853 1.79929 1.19210 1.44698 1.23142 0.95832 0.90759 0.94388 1.22098 0.96477 0.94434 1.03384 1.21864 0.91648 0.97137 1.03529 0.92599 0.96649 0.96703 0.92151 0.92265 0.92341 0.92134 0.85228 0.85439 0.88222 0.89713 0.75224 0.90569 0.88036 0.87773 0.93770 0.88115 0.90698 0.88425 0.89348 0.88104 0.87787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.48 13.96 21.45 0.30 -59.18 16 2 C 0.00 0.10 5.47 84.66 0.46 0.56 16 3 Si 0.95 44.48 27.47 68.60 1.88 46.37 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 6 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 7 C -0.53 -30.13 9.66 25.60 0.25 -29.88 16 8 H 0.04 2.29 7.99 -2.91 -0.02 2.27 16 9 C -0.02 -0.81 4.04 29.85 0.12 -0.69 16 10 C -0.10 -3.29 5.15 30.59 0.16 -3.13 16 11 C -0.10 -2.78 4.50 30.59 0.14 -2.64 16 12 C -0.11 -1.95 5.81 29.85 0.17 -1.78 16 13 C 0.47 9.34 7.94 71.24 0.57 9.91 16 14 O -0.53 -14.21 15.20 21.95 0.33 -13.88 16 15 O -0.34 -5.20 9.90 -51.33 -0.51 -5.70 16 16 C 0.07 0.91 2.48 30.68 0.08 0.98 16 17 H 0.08 1.40 5.54 -2.39 -0.01 1.39 16 18 C 0.09 1.06 6.82 86.49 0.59 1.65 16 19 N -0.70 -8.86 5.45 -467.31 -2.55 -11.41 16 20 C 0.52 8.43 6.25 87.72 0.55 8.98 16 21 O -0.57 -12.66 12.43 -3.04 -0.04 -12.70 16 22 C -0.07 -0.84 0.53 -52.95 -0.03 -0.87 16 23 C -0.14 -1.90 4.67 30.69 0.14 -1.76 16 24 C 0.05 0.94 6.56 72.02 0.47 1.41 16 25 O -0.40 -7.88 10.76 -148.98 -1.60 -9.49 16 26 C 0.03 0.57 6.54 72.01 0.47 1.04 16 27 C -0.13 -1.45 4.85 30.69 0.15 -1.30 16 28 C -0.10 -1.01 4.43 30.73 0.14 -0.87 16 29 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 30 H 0.02 0.69 7.20 -2.39 -0.02 0.68 16 31 H 0.01 0.66 7.57 -2.39 -0.02 0.64 16 32 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.06 1.69 8.10 -2.39 -0.02 1.67 16 35 H 0.06 1.72 8.10 -2.38 -0.02 1.70 16 36 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.41 4.49 8.80 -92.71 -0.82 3.67 16 41 H 0.08 1.06 6.73 -2.39 -0.02 1.04 16 42 H 0.10 1.14 8.13 -2.39 -0.02 1.12 16 43 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.04 0.91 6.31 -2.39 -0.02 0.90 16 45 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.08 1.55 5.14 -2.39 -0.01 1.53 16 47 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.09 0.82 8.14 -2.38 -0.02 0.81 16 49 H 0.10 0.74 8.10 -2.39 -0.02 0.72 16 50 H 0.10 0.84 8.09 -2.39 -0.02 0.82 16 Total: -1.00 -74.05 387.16 2.32 -71.74 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 0.07 Total: 12.64 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: 4.42 Total: -18.39 kcal Atomic # 7 Polarization: -68.34 SS G_CDS: -2.25 Total: -70.59 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -1.82 Total: -41.77 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.37 kcal Total: -74.05 2.32 -71.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893600921.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.687 kcal (2) G-P(sol) polarization free energy of solvation -74.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds