Wall clock time and date at job start Tue Mar 31 2020 22:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00319 * 2 1 4 4 H 1.48497 * 109.47062 * 271.23636 * 3 2 1 5 5 H 1.48499 * 109.47023 * 31.23946 * 3 2 1 6 6 H 1.48502 * 109.46801 * 151.23908 * 3 2 1 7 7 C 1.37888 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99429 * 358.78817 * 7 2 1 9 9 C 1.50689 * 120.00332 * 178.79658 * 7 2 1 10 10 C 1.52998 * 115.55302 * 87.31740 * 9 7 2 11 11 N 1.46498 * 109.47200 * 32.58892 * 10 9 7 12 12 C 1.34776 * 120.00228 * 185.60965 * 11 10 9 13 13 O 1.21271 * 119.99781 * 4.85980 * 12 11 10 14 14 C 1.50700 * 119.99533 * 184.86038 * 12 11 10 15 15 C 1.53007 * 109.46636 * 174.70204 * 14 12 11 16 16 C 1.52998 * 109.47066 * 179.97438 * 15 14 12 17 17 H 1.09002 * 110.33408 * 55.79913 * 16 15 14 18 18 C 1.54485 * 110.37387 * 178.16371 * 16 15 14 19 19 C 1.54504 * 104.06250 * 142.81102 * 18 16 15 20 20 C 1.54483 * 104.06456 * 0.02562 * 19 18 16 21 21 H 1.08999 * 110.37501 * 94.85348 * 20 19 18 22 22 C 1.53002 * 110.46544 * 217.14371 * 20 19 18 23 23 O 1.43748 * 109.63461 * 296.25366 * 22 20 19 24 24 C 1.44789 * 104.81803 * 215.80915 * 23 22 20 25 25 C 1.54914 * 101.71704 * 36.10026 * 24 23 22 26 26 O 1.43366 * 109.63168 * 176.88811 * 22 20 19 27 27 O 1.44422 * 104.80324 * 336.02125 * 20 19 18 28 28 C 1.52999 * 117.51810 * 233.02796 * 9 7 2 29 29 C 1.52993 * 60.00255 * 107.47915 * 28 9 7 30 30 H 0.96999 * 119.99702 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.47523 * 272.58294 * 10 9 7 32 32 H 1.09008 * 109.47119 * 152.58825 * 10 9 7 33 33 H 0.97003 * 119.99777 * 5.61289 * 11 10 9 34 34 H 1.08993 * 109.47369 * 54.70629 * 14 12 11 35 35 H 1.08993 * 109.47503 * 294.69834 * 14 12 11 36 36 H 1.09001 * 109.47425 * 299.99765 * 15 14 12 37 37 H 1.08993 * 109.47227 * 59.99702 * 15 14 12 38 38 H 1.09001 * 110.50872 * 261.45748 * 18 16 15 39 39 H 1.08995 * 110.50769 * 24.16786 * 18 16 15 40 40 H 1.09005 * 110.51457 * 241.35904 * 19 18 16 41 41 H 1.08999 * 110.63210 * 118.70648 * 19 18 16 42 42 H 1.09000 * 109.62781 * 56.49601 * 22 20 19 43 43 H 1.08998 * 110.97640 * 277.99562 * 24 23 22 44 44 H 1.08995 * 110.97601 * 154.20671 * 24 23 22 45 45 H 1.08998 * 110.69558 * 206.03991 * 25 24 23 46 46 H 1.09006 * 110.69430 * 82.83784 * 25 24 23 47 47 H 1.09008 * 117.49622 * 214.96756 * 28 9 7 48 48 H 1.08996 * 117.49712 * 359.97438 * 28 9 7 49 49 H 1.09004 * 117.49427 * 252.51205 * 29 28 9 50 50 H 1.09001 * 117.50189 * 107.49654 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4705 2.0615 -1.3997 5 1 1.4600 2.6449 0.7261 6 1 3.5596 1.4326 0.6737 7 6 2.0045 -1.1942 -0.0005 8 1 1.4646 -2.1293 0.0188 9 6 3.5111 -1.1944 -0.0279 10 6 4.1961 -1.1160 1.3379 11 7 3.3747 -1.8050 2.3363 12 6 3.7237 -1.7682 3.6376 13 8 4.6660 -1.0931 3.9938 14 6 2.9427 -2.5661 4.6499 15 6 3.6190 -2.4555 6.0179 16 6 2.8259 -3.2650 7.0458 17 1 2.7226 -4.2987 6.7159 18 6 3.5167 -3.2052 8.4264 19 6 2.3440 -3.1438 9.4305 20 6 1.0835 -3.1743 8.5380 21 1 0.7132 -4.1947 8.4390 22 6 -0.0044 -2.2679 9.1175 23 8 -0.4191 -2.7697 10.3991 24 6 -1.8403 -2.4998 10.4603 25 6 -2.2689 -2.7360 8.9905 26 8 -1.1373 -2.2528 8.2389 27 8 1.5257 -2.6735 7.2576 28 6 4.1982 -2.0214 -1.1164 29 6 4.1964 -0.4939 -1.2030 30 1 -0.4850 0.8401 -0.0004 31 1 4.3164 -0.0713 1.6247 32 1 5.1750 -1.5923 1.2814 33 1 2.5797 -2.2878 2.0608 34 1 2.9122 -3.6116 4.3432 35 1 1.9269 -2.1765 4.7143 36 1 4.6350 -2.8452 5.9536 37 1 3.6497 -1.4101 6.3246 38 1 4.1155 -4.1006 8.5928 39 1 4.1347 -2.3110 8.5057 40 1 2.3823 -2.2190 10.0064 41 1 2.3619 -4.0074 10.0952 42 1 0.3843 -1.2560 9.2312 43 1 -2.0292 -1.4694 10.7611 44 1 -2.3416 -3.1985 11.1301 45 1 -3.1634 -2.1603 8.7528 46 1 -2.4314 -3.7974 8.8024 47 1 5.1383 -2.5098 -0.8594 48 1 3.5604 -2.5659 -1.8127 49 1 3.5574 -0.0334 -1.9564 50 1 5.1352 0.0226 -1.0030 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897634529.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:02 Heat of formation + Delta-G solvation = -153.057014 kcal Electronic energy + Delta-G solvation = -29868.800023 eV Core-core repulsion = 25668.793531 eV Total energy + Delta-G solvation = -4200.006492 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.85231 -39.53444 -38.88000 -37.01485 -35.34519 -33.62542 -33.25222 -32.31157 -32.15600 -30.90223 -28.72500 -26.78313 -25.59941 -24.71294 -23.67830 -22.61889 -21.69031 -21.52395 -20.91868 -19.61000 -19.02092 -17.77854 -17.22714 -16.71125 -16.58933 -16.39749 -16.18165 -15.56012 -15.19126 -15.08423 -14.76636 -14.49752 -14.39517 -14.02139 -13.74019 -13.69514 -13.31278 -13.05582 -12.96325 -12.80293 -12.63580 -12.31490 -12.16118 -12.13755 -11.86473 -11.65145 -11.58051 -11.15576 -10.97964 -10.92271 -10.71296 -10.63646 -10.62730 -10.49128 -10.16945 -10.05458 -9.70866 -9.64232 -9.30189 -9.05925 -8.65682 -8.58221 -8.05780 -6.17550 -4.23137 2.82691 3.29673 3.30907 3.40448 3.46839 3.48387 3.92595 3.99862 4.17490 4.36850 4.40750 4.48136 4.53903 4.66194 4.70929 4.78366 4.88977 4.95500 5.04187 5.09449 5.12976 5.14892 5.21264 5.27185 5.37817 5.44958 5.57458 5.59150 5.64884 5.70982 5.75991 5.80698 5.92421 5.95070 6.01851 6.10884 6.23848 6.33288 6.37421 6.46793 6.58779 6.65165 6.73676 6.81966 6.94449 7.09453 7.32774 7.69330 8.39402 8.41155 8.81965 8.98398 9.46264 10.92969 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.013679 B = 0.002497 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.463789 B =11211.806058 C =12565.542352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.085 3.915 3 Si 0.878 3.122 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.255 1.255 7 C -0.495 4.495 8 H 0.080 0.920 9 C -0.015 4.015 10 C 0.151 3.849 11 N -0.697 5.697 12 C 0.504 3.496 13 O -0.569 6.569 14 C -0.139 4.139 15 C -0.093 4.093 16 C 0.074 3.926 17 H 0.071 0.929 18 C -0.151 4.151 19 C -0.142 4.142 20 C 0.065 3.935 21 H 0.076 0.924 22 C 0.241 3.759 23 O -0.375 6.375 24 C 0.017 3.983 25 C 0.017 3.983 26 O -0.368 6.368 27 O -0.348 6.348 28 C -0.179 4.179 29 C -0.197 4.197 30 H 0.266 0.734 31 H 0.061 0.939 32 H 0.044 0.956 33 H 0.411 0.589 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.078 0.922 44 H 0.111 0.889 45 H 0.103 0.897 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.087 0.913 49 H 0.089 0.911 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.202 -8.694 20.987 22.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.119 4.119 3 Si 0.706 3.294 4 H -0.205 1.205 5 H -0.221 1.221 6 H -0.179 1.179 7 C -0.533 4.533 8 H 0.098 0.902 9 C -0.016 4.016 10 C 0.027 3.973 11 N -0.348 5.348 12 C 0.290 3.710 13 O -0.449 6.449 14 C -0.179 4.179 15 C -0.131 4.131 16 C 0.016 3.984 17 H 0.089 0.911 18 C -0.189 4.189 19 C -0.180 4.180 20 C 0.006 3.994 21 H 0.094 0.906 22 C 0.146 3.854 23 O -0.296 6.296 24 C -0.059 4.059 25 C -0.059 4.059 26 O -0.288 6.288 27 O -0.267 6.267 28 C -0.216 4.216 29 C -0.235 4.235 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.249 0.751 34 H 0.105 0.895 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.097 0.903 44 H 0.129 0.871 45 H 0.121 0.879 46 H 0.095 0.905 47 H 0.091 0.909 48 H 0.105 0.895 49 H 0.107 0.893 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.317 -8.005 21.002 22.478 hybrid contribution -0.138 0.657 -0.092 0.677 sum 0.178 -7.349 20.910 22.164 Atomic orbital electron populations 1.69880 1.06377 1.27367 1.49100 1.24947 0.94525 0.99139 0.93266 0.86886 0.80968 0.83285 0.78304 1.20482 1.22096 1.17927 1.20134 0.86075 0.94476 1.52575 0.90248 1.19629 0.95385 1.00407 0.86170 1.21022 0.91542 0.96444 0.88311 1.46012 1.29674 1.53299 1.05807 1.20617 0.84658 0.82146 0.83535 1.90616 1.30908 1.43152 1.80269 1.21604 1.01371 1.01007 0.93922 1.21374 0.98030 1.01572 0.92117 1.23136 0.83035 0.97150 0.95076 0.91080 1.23008 0.98154 1.03463 0.94228 1.22840 0.93423 1.03507 0.98203 1.23186 0.93978 0.97330 0.84922 0.90589 1.24024 0.87350 0.97126 0.76904 1.89183 1.23176 1.82727 1.34471 1.24446 0.80844 1.02772 0.97875 1.24256 0.90857 1.01055 0.89776 1.89055 1.17406 1.86344 1.36024 1.89233 1.33114 1.69605 1.34745 1.22906 1.00974 0.92912 1.04816 1.22949 1.01480 0.95028 1.04009 0.92417 0.92069 0.93819 0.75061 0.89454 0.88089 0.90013 0.90216 0.90340 0.90086 0.90439 0.90166 0.89014 0.90332 0.87140 0.87936 0.90520 0.90897 0.89484 0.89288 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.21 13.96 55.43 0.77 -25.44 16 2 C 0.09 2.36 5.47 -17.82 -0.10 2.26 16 3 Si 0.88 21.82 25.16 -169.99 -4.28 17.55 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.25 -6.19 5.30 56.52 0.30 -5.89 16 7 C -0.50 -12.93 7.79 -34.44 -0.27 -13.20 16 8 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 9 C -0.01 -0.33 1.24 -155.67 -0.19 -0.52 16 10 C 0.15 3.26 5.63 -4.04 -0.02 3.24 16 11 N -0.70 -14.15 5.28 -60.29 -0.32 -14.46 16 12 C 0.50 9.73 7.82 -10.99 -0.09 9.64 16 13 O -0.57 -12.59 15.95 5.57 0.09 -12.50 16 14 C -0.14 -2.09 5.62 -27.88 -0.16 -2.25 16 15 C -0.09 -1.25 4.16 -26.73 -0.11 -1.36 16 16 C 0.07 0.84 3.27 -25.95 -0.08 0.75 16 17 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 18 C -0.15 -1.38 6.63 -25.16 -0.17 -1.55 16 19 C -0.14 -1.28 6.43 -25.16 -0.16 -1.44 16 20 C 0.06 0.72 3.31 -25.95 -0.09 0.63 16 21 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 22 C 0.24 2.69 3.65 37.16 0.14 2.82 16 23 O -0.37 -3.62 11.13 -59.04 -0.66 -4.27 16 24 C 0.02 0.11 7.95 38.17 0.30 0.41 16 25 C 0.02 0.14 8.07 38.17 0.31 0.44 16 26 O -0.37 -4.62 11.16 -62.52 -0.70 -5.32 16 27 O -0.35 -4.78 10.63 -40.59 -0.43 -5.22 16 28 C -0.18 -3.52 9.88 -26.73 -0.26 -3.78 16 29 C -0.20 -4.12 7.60 -26.73 -0.20 -4.33 16 30 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.06 1.45 6.39 -51.93 -0.33 1.12 16 32 H 0.04 0.88 7.89 -51.92 -0.41 0.47 16 33 H 0.41 8.23 7.28 -40.82 -0.30 7.94 16 34 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.10 1.61 7.91 -51.93 -0.41 1.20 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 1.20 8.04 -51.93 -0.42 0.78 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.75 7.87 -51.93 -0.41 0.35 16 40 H 0.08 0.68 7.86 -51.93 -0.41 0.28 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.09 1.02 8.12 -51.93 -0.42 0.60 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 1.27 8.04 -51.92 -0.42 0.85 16 48 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 49 H 0.09 1.95 7.22 -51.93 -0.37 1.58 16 50 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 398.00 15.07 6.00 6.00 Total: -1.00 -32.83 398.00 -9.31 -42.14 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -8.63 Total: 9.75 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -1.15 Total: -8.22 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.46 Total: -39.90 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -1.70 Total: -27.31 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.28 Total: 17.55 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.83 -9.31 -42.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897634529.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.920 kcal (2) G-P(sol) polarization free energy of solvation -32.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds