Wall clock time and date at job start Tue Mar 31 2020 22:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00319 * 2 1 4 4 H 1.48497 * 109.47062 * 271.23636 * 3 2 1 5 5 H 1.48499 * 109.47023 * 31.23946 * 3 2 1 6 6 H 1.48502 * 109.46801 * 151.23908 * 3 2 1 7 7 C 1.37888 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99429 * 358.78817 * 7 2 1 9 9 C 1.50689 * 120.00332 * 178.79658 * 7 2 1 10 10 C 1.52998 * 115.55302 * 87.31740 * 9 7 2 11 11 N 1.46498 * 109.47200 * 32.58892 * 10 9 7 12 12 C 1.34776 * 120.00228 * 185.60965 * 11 10 9 13 13 O 1.21271 * 119.99781 * 4.85980 * 12 11 10 14 14 C 1.50700 * 119.99533 * 184.86038 * 12 11 10 15 15 C 1.53007 * 109.46636 * 174.70204 * 14 12 11 16 16 C 1.52998 * 109.47066 * 179.97438 * 15 14 12 17 17 H 1.09002 * 110.33408 * 55.79913 * 16 15 14 18 18 C 1.54485 * 110.37387 * 178.16371 * 16 15 14 19 19 C 1.54504 * 104.06250 * 142.81102 * 18 16 15 20 20 C 1.54483 * 104.06456 * 0.02562 * 19 18 16 21 21 H 1.08999 * 110.37501 * 94.85348 * 20 19 18 22 22 C 1.53002 * 110.46544 * 217.14371 * 20 19 18 23 23 O 1.43748 * 109.63461 * 296.25366 * 22 20 19 24 24 C 1.44789 * 104.81803 * 215.80915 * 23 22 20 25 25 C 1.54914 * 101.71704 * 36.10026 * 24 23 22 26 26 O 1.43366 * 109.63168 * 176.88811 * 22 20 19 27 27 O 1.44422 * 104.80324 * 336.02125 * 20 19 18 28 28 C 1.52999 * 117.51810 * 233.02796 * 9 7 2 29 29 C 1.52993 * 60.00255 * 107.47915 * 28 9 7 30 30 H 0.96999 * 119.99702 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.47523 * 272.58294 * 10 9 7 32 32 H 1.09008 * 109.47119 * 152.58825 * 10 9 7 33 33 H 0.97003 * 119.99777 * 5.61289 * 11 10 9 34 34 H 1.08993 * 109.47369 * 54.70629 * 14 12 11 35 35 H 1.08993 * 109.47503 * 294.69834 * 14 12 11 36 36 H 1.09001 * 109.47425 * 299.99765 * 15 14 12 37 37 H 1.08993 * 109.47227 * 59.99702 * 15 14 12 38 38 H 1.09001 * 110.50872 * 261.45748 * 18 16 15 39 39 H 1.08995 * 110.50769 * 24.16786 * 18 16 15 40 40 H 1.09005 * 110.51457 * 241.35904 * 19 18 16 41 41 H 1.08999 * 110.63210 * 118.70648 * 19 18 16 42 42 H 1.09000 * 109.62781 * 56.49601 * 22 20 19 43 43 H 1.08998 * 110.97640 * 277.99562 * 24 23 22 44 44 H 1.08995 * 110.97601 * 154.20671 * 24 23 22 45 45 H 1.08998 * 110.69558 * 206.03991 * 25 24 23 46 46 H 1.09006 * 110.69430 * 82.83784 * 25 24 23 47 47 H 1.09008 * 117.49622 * 214.96756 * 28 9 7 48 48 H 1.08996 * 117.49712 * 359.97438 * 28 9 7 49 49 H 1.09004 * 117.49427 * 252.51205 * 29 28 9 50 50 H 1.09001 * 117.50189 * 107.49654 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4705 2.0615 -1.3997 5 1 1.4600 2.6449 0.7261 6 1 3.5596 1.4326 0.6737 7 6 2.0045 -1.1942 -0.0005 8 1 1.4646 -2.1293 0.0188 9 6 3.5111 -1.1944 -0.0279 10 6 4.1961 -1.1160 1.3379 11 7 3.3747 -1.8050 2.3363 12 6 3.7237 -1.7682 3.6376 13 8 4.6660 -1.0931 3.9938 14 6 2.9427 -2.5661 4.6499 15 6 3.6190 -2.4555 6.0179 16 6 2.8259 -3.2650 7.0458 17 1 2.7226 -4.2987 6.7159 18 6 3.5167 -3.2052 8.4264 19 6 2.3440 -3.1438 9.4305 20 6 1.0835 -3.1743 8.5380 21 1 0.7132 -4.1947 8.4390 22 6 -0.0044 -2.2679 9.1175 23 8 -0.4191 -2.7697 10.3991 24 6 -1.8403 -2.4998 10.4603 25 6 -2.2689 -2.7360 8.9905 26 8 -1.1373 -2.2528 8.2389 27 8 1.5257 -2.6735 7.2576 28 6 4.1982 -2.0214 -1.1164 29 6 4.1964 -0.4939 -1.2030 30 1 -0.4850 0.8401 -0.0004 31 1 4.3164 -0.0713 1.6247 32 1 5.1750 -1.5923 1.2814 33 1 2.5797 -2.2878 2.0608 34 1 2.9122 -3.6116 4.3432 35 1 1.9269 -2.1765 4.7143 36 1 4.6350 -2.8452 5.9536 37 1 3.6497 -1.4101 6.3246 38 1 4.1155 -4.1006 8.5928 39 1 4.1347 -2.3110 8.5057 40 1 2.3823 -2.2190 10.0064 41 1 2.3619 -4.0074 10.0952 42 1 0.3843 -1.2560 9.2312 43 1 -2.0292 -1.4694 10.7611 44 1 -2.3416 -3.1985 11.1301 45 1 -3.1634 -2.1603 8.7528 46 1 -2.4314 -3.7974 8.8024 47 1 5.1383 -2.5098 -0.8594 48 1 3.5604 -2.5659 -1.8127 49 1 3.5574 -0.0334 -1.9564 50 1 5.1352 0.0226 -1.0030 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897634529.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:01 Heat of formation + Delta-G solvation = -175.903514 kcal Electronic energy + Delta-G solvation = -29869.790722 eV Core-core repulsion = 25668.793531 eV Total energy + Delta-G solvation = -4200.997191 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.61084 -40.76887 -40.08414 -38.72221 -36.11079 -34.92313 -34.70023 -34.25599 -33.13079 -31.70300 -29.67787 -28.29707 -27.36117 -25.92026 -24.33232 -23.53856 -23.31356 -22.41174 -21.79163 -21.29720 -20.71608 -18.55154 -18.40385 -18.05264 -17.73358 -17.41569 -17.25765 -17.06174 -16.51029 -16.42065 -16.19849 -15.61403 -15.36513 -15.11717 -14.89168 -14.73754 -14.65934 -14.47551 -14.21731 -14.11282 -13.87178 -13.72585 -13.64680 -13.11286 -12.89544 -12.74135 -12.62393 -12.57308 -12.32607 -12.16252 -12.02164 -11.91990 -11.88380 -11.58901 -11.55594 -11.25833 -11.06973 -10.90629 -10.80524 -10.62612 -10.55303 -10.36344 -9.74373 -8.32200 -6.38065 1.29849 1.37162 1.46469 1.75934 2.11853 2.34151 2.43983 2.74928 3.04608 3.20000 3.22055 3.54075 3.61839 3.70951 3.84475 3.92204 3.97828 4.01563 4.06094 4.07389 4.17864 4.21803 4.34187 4.35137 4.39679 4.40671 4.53391 4.56918 4.61199 4.64960 4.68955 4.78312 4.78629 4.86506 4.90554 4.91730 4.95521 5.07793 5.08013 5.12199 5.15066 5.22678 5.29484 5.49073 5.63389 5.75021 5.85996 6.04009 6.28139 6.69614 6.82026 7.33391 7.39643 8.81515 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.013679 B = 0.002497 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.463789 B =11211.806058 C =12565.542352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.037 3.963 3 Si 0.922 3.078 4 H -0.267 1.267 5 H -0.306 1.306 6 H -0.245 1.245 7 C -0.479 4.479 8 H 0.052 0.948 9 C -0.042 4.042 10 C 0.158 3.842 11 N -0.702 5.702 12 C 0.501 3.499 13 O -0.597 6.597 14 C -0.131 4.131 15 C -0.087 4.087 16 C 0.072 3.928 17 H 0.087 0.913 18 C -0.146 4.146 19 C -0.135 4.135 20 C 0.060 3.940 21 H 0.078 0.922 22 C 0.241 3.759 23 O -0.382 6.382 24 C 0.017 3.983 25 C 0.008 3.992 26 O -0.404 6.404 27 O -0.380 6.380 28 C -0.153 4.153 29 C -0.197 4.197 30 H 0.264 0.736 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.412 0.588 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.140 0.860 45 H 0.117 0.883 46 H 0.084 0.916 47 H 0.105 0.895 48 H 0.085 0.915 49 H 0.076 0.924 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.320 -10.047 22.066 24.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.162 4.162 3 Si 0.748 3.252 4 H -0.193 1.193 5 H -0.233 1.233 6 H -0.168 1.168 7 C -0.516 4.516 8 H 0.070 0.930 9 C -0.043 4.043 10 C 0.033 3.967 11 N -0.352 5.352 12 C 0.290 3.710 13 O -0.480 6.480 14 C -0.170 4.170 15 C -0.125 4.125 16 C 0.015 3.985 17 H 0.105 0.895 18 C -0.183 4.183 19 C -0.173 4.173 20 C 0.002 3.998 21 H 0.096 0.904 22 C 0.145 3.855 23 O -0.303 6.303 24 C -0.059 4.059 25 C -0.068 4.068 26 O -0.325 6.325 27 O -0.300 6.300 28 C -0.190 4.190 29 C -0.234 4.234 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.249 0.751 34 H 0.134 0.866 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.074 0.926 38 H 0.121 0.879 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.117 0.883 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.158 0.842 45 H 0.135 0.865 46 H 0.102 0.898 47 H 0.123 0.877 48 H 0.103 0.897 49 H 0.095 0.905 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.851 -9.374 22.081 24.060 hybrid contribution -0.674 1.006 -0.432 1.285 sum 1.177 -8.368 21.650 23.240 Atomic orbital electron populations 1.69992 1.07849 1.27808 1.51949 1.25580 0.94932 1.01956 0.93763 0.86169 0.80176 0.80078 0.78730 1.19254 1.23333 1.16838 1.20277 0.88273 0.92951 1.50126 0.93032 1.19537 0.93308 1.03908 0.87517 1.20897 0.92529 0.95477 0.87794 1.46077 1.29641 1.53275 1.06255 1.21304 0.84379 0.81756 0.83603 1.90595 1.32379 1.44412 1.80611 1.21617 0.99988 1.01739 0.93677 1.21329 0.98835 1.00712 0.91620 1.23211 0.82349 0.97157 0.95743 0.89471 1.23001 0.98148 1.04485 0.92689 1.22822 0.92150 1.04309 0.97976 1.23307 0.94879 0.97187 0.84439 0.90403 1.23955 0.87256 0.96827 0.77442 1.89162 1.24877 1.82699 1.33541 1.24684 0.79405 1.04314 0.97482 1.24526 0.90193 1.01686 0.90361 1.89018 1.18979 1.86833 1.37701 1.89203 1.34209 1.70389 1.36238 1.22956 1.01554 0.92286 1.02212 1.22999 1.01857 0.96307 1.02262 0.92672 0.94425 0.91901 0.75071 0.86587 0.89196 0.89010 0.92561 0.87914 0.90492 0.90537 0.88342 0.89962 0.89375 0.84216 0.86497 0.89820 0.87711 0.89669 0.90525 0.88535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.63 13.96 21.45 0.30 -56.33 16 2 C 0.04 2.07 5.47 84.66 0.46 2.53 16 3 Si 0.92 45.08 25.16 68.60 1.73 46.81 16 4 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.31 -15.43 7.11 99.48 0.71 -14.72 16 6 H -0.24 -11.48 5.30 99.48 0.53 -10.95 16 7 C -0.48 -25.13 7.79 25.60 0.20 -24.93 16 8 H 0.05 2.94 8.06 -2.91 -0.02 2.92 16 9 C -0.04 -1.80 1.24 -52.93 -0.07 -1.87 16 10 C 0.16 6.59 5.63 86.38 0.49 7.07 16 11 N -0.70 -28.14 5.28 -463.07 -2.45 -30.59 16 12 C 0.50 19.14 7.82 87.66 0.69 19.82 16 13 O -0.60 -26.28 15.95 -3.00 -0.05 -26.32 16 14 C -0.13 -3.85 5.62 29.85 0.17 -3.68 16 15 C -0.09 -2.27 4.16 30.60 0.13 -2.14 16 16 C 0.07 1.56 3.27 31.10 0.10 1.67 16 17 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 18 C -0.15 -2.40 6.63 31.61 0.21 -2.19 16 19 C -0.13 -2.22 6.43 31.61 0.20 -2.02 16 20 C 0.06 1.31 3.31 31.10 0.10 1.41 16 21 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 22 C 0.24 5.37 3.65 71.98 0.26 5.63 16 23 O -0.38 -6.97 11.13 -126.22 -1.40 -8.37 16 24 C 0.02 0.19 7.95 72.64 0.58 0.77 16 25 C 0.01 0.12 8.07 72.64 0.59 0.71 16 26 O -0.40 -10.31 11.16 -122.89 -1.37 -11.68 16 27 O -0.38 -10.46 10.63 -143.86 -1.53 -11.99 16 28 C -0.15 -5.56 9.88 30.59 0.30 -5.26 16 29 C -0.20 -7.73 7.60 30.59 0.23 -7.50 16 30 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 31 H 0.04 1.74 6.39 -2.39 -0.02 1.73 16 32 H 0.06 2.38 7.89 -2.38 -0.02 2.36 16 33 H 0.41 16.48 7.28 -92.71 -0.68 15.81 16 34 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 35 H 0.09 2.90 7.91 -2.39 -0.02 2.88 16 36 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.06 1.72 8.04 -2.39 -0.02 1.70 16 38 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.08 1.33 7.87 -2.39 -0.02 1.31 16 40 H 0.08 1.27 7.86 -2.38 -0.02 1.25 16 41 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.08 1.91 8.12 -2.39 -0.02 1.89 16 43 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 47 H 0.10 3.18 8.04 -2.38 -0.02 3.16 16 48 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 49 H 0.08 3.21 7.22 -2.39 -0.02 3.19 16 50 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 Total: -1.00 -72.11 398.00 -0.06 -72.17 By element: Atomic # 1 Polarization: 36.20 SS G_CDS: 0.07 Total: 36.28 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 4.64 Total: -9.97 kcal Atomic # 7 Polarization: -84.78 SS G_CDS: -2.15 Total: -86.92 kcal Atomic # 8 Polarization: -54.02 SS G_CDS: -4.35 Total: -58.37 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.73 Total: 46.81 kcal Total: -72.11 -0.06 -72.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897634529.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.731 kcal (2) G-P(sol) polarization free energy of solvation -72.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds