Wall clock time and date at job start Tue Mar 31 2020 22:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00089 * 2 1 4 4 H 1.48501 * 109.47251 * 240.27613 * 3 2 1 5 5 H 1.48507 * 109.47039 * 0.27507 * 3 2 1 6 6 H 1.48496 * 109.47365 * 120.27402 * 3 2 1 7 7 C 1.37878 * 120.00024 * 180.27124 * 2 1 3 8 8 H 1.07995 * 120.00077 * 174.76259 * 7 2 1 9 9 C 1.50702 * 119.99988 * 354.76796 * 7 2 1 10 10 C 1.52999 * 115.55057 * 279.47679 * 9 7 2 11 11 N 1.46498 * 109.46988 * 294.82321 * 10 9 7 12 12 C 1.34778 * 120.00047 * 184.79029 * 11 10 9 13 13 O 1.21284 * 120.00029 * 0.02562 * 12 11 10 14 14 C 1.50696 * 120.00227 * 179.97438 * 12 11 10 15 15 C 1.52997 * 109.47327 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.47298 * 180.02562 * 15 14 12 17 17 H 1.08997 * 109.82376 * 305.56635 * 16 15 14 18 18 C 1.54380 * 109.82986 * 184.58748 * 16 15 14 19 19 C 1.55310 * 102.24885 * 219.12924 * 18 16 15 20 20 C 1.54944 * 100.94243 * 34.13460 * 19 18 16 21 21 H 1.09000 * 110.30934 * 82.47072 * 20 19 18 22 22 C 1.53001 * 110.31077 * 204.63775 * 20 19 18 23 23 O 1.43756 * 109.62928 * 296.53278 * 22 20 19 24 24 C 1.44785 * 104.81312 * 215.80468 * 23 22 20 25 25 C 1.54914 * 101.72211 * 36.09992 * 24 23 22 26 26 O 1.43365 * 109.63550 * 177.16515 * 22 20 19 27 27 O 1.43242 * 109.82683 * 66.45228 * 16 15 14 28 28 C 1.52995 * 117.49847 * 133.76581 * 9 7 2 29 29 C 1.52999 * 117.49568 * 65.14308 * 9 7 2 30 30 H 0.97002 * 120.00067 * 4.72607 * 1 2 3 31 31 H 1.09000 * 109.46795 * 54.82094 * 10 9 7 32 32 H 1.09001 * 109.47381 * 174.82139 * 10 9 7 33 33 H 0.97001 * 120.00211 * 4.78569 * 11 10 9 34 34 H 1.09002 * 109.47089 * 300.00319 * 14 12 11 35 35 H 1.09006 * 109.46898 * 60.00149 * 14 12 11 36 36 H 1.09002 * 109.47109 * 300.00076 * 15 14 12 37 37 H 1.08997 * 109.46942 * 60.00107 * 15 14 12 38 38 H 1.08996 * 110.84691 * 337.31883 * 18 16 15 39 39 H 1.08996 * 110.85032 * 100.94421 * 18 16 15 40 40 H 1.08994 * 111.12640 * 276.20940 * 19 18 16 41 41 H 1.09009 * 111.15680 * 152.06822 * 19 18 16 42 42 H 1.08998 * 109.62423 * 56.76828 * 22 20 19 43 43 H 1.09006 * 110.97518 * 277.99580 * 24 23 22 44 44 H 1.09003 * 111.01095 * 154.22900 * 24 23 22 45 45 H 1.09001 * 110.69654 * 206.04018 * 25 24 23 46 46 H 1.08997 * 110.83866 * 82.90734 * 25 24 23 47 47 H 1.09001 * 117.49821 * 0.02562 * 28 9 7 48 48 H 1.08997 * 117.49736 * 145.02130 * 28 9 7 49 49 H 1.09003 * 117.49831 * 214.98011 * 29 9 7 50 50 H 1.08998 * 117.50384 * 0.02562 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0979 1.6993 -1.2159 5 1 1.2842 2.7465 0.0067 6 1 3.1080 1.6935 1.2091 7 6 2.0046 -1.1940 -0.0057 8 1 3.0811 -1.1956 -0.0910 9 6 1.2558 -2.4970 0.1072 10 6 0.8390 -2.8980 1.5236 11 7 2.0347 -3.1538 2.3305 12 6 1.9113 -3.6167 3.5902 13 8 0.8103 -3.8219 4.0558 14 6 3.1413 -3.8804 4.4200 15 6 2.7253 -4.3966 5.7989 16 6 3.9740 -4.6637 6.6416 17 1 4.6450 -5.3349 6.1057 18 6 3.5697 -5.2928 7.9922 19 6 4.5431 -4.5987 8.9836 20 6 4.6674 -3.1950 8.3395 21 1 3.8257 -2.5680 8.6334 22 6 5.9879 -2.5386 8.7474 23 8 6.0037 -2.3285 10.1695 24 6 6.7084 -1.0768 10.3510 25 6 6.2317 -0.2660 9.1201 26 8 6.1182 -1.2703 8.0918 27 8 4.6439 -3.4291 6.9224 28 6 1.6387 -3.6179 -0.8611 29 6 0.3145 -2.8723 -1.0391 30 1 -0.4850 0.8372 -0.0692 31 1 0.2621 -2.0908 1.9748 32 1 0.2294 -3.8006 1.4812 33 1 2.9153 -2.9901 1.9581 34 1 3.7606 -4.6279 3.9243 35 1 3.7080 -2.9562 4.5334 36 1 2.1057 -3.6494 6.2949 37 1 2.1588 -5.3208 5.6851 38 1 2.5340 -5.0563 8.2357 39 1 3.7304 -6.3708 7.9816 40 1 5.5072 -5.1066 9.0081 41 1 4.1094 -4.5360 9.9818 42 1 6.8199 -3.1838 8.4655 43 1 7.7874 -1.2290 10.3239 44 1 6.4081 -0.5903 11.2790 45 1 6.9711 0.4859 8.8443 46 1 5.2649 0.1990 9.3128 47 1 2.4324 -3.4132 -1.5795 48 1 1.5938 -4.6415 -0.4891 49 1 -0.6015 -3.4054 -0.7842 50 1 0.2372 -2.1772 -1.8751 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897634531.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:07 Heat of formation + Delta-G solvation = -158.677858 kcal Electronic energy + Delta-G solvation = -29721.068909 eV Core-core repulsion = 25520.818679 eV Total energy + Delta-G solvation = -4200.250230 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.89133 -39.60275 -38.83294 -36.65636 -35.37578 -33.59161 -33.16765 -32.39485 -31.95292 -30.92373 -28.74590 -26.61150 -25.51137 -24.64350 -23.69536 -22.67679 -21.78715 -21.15103 -20.63236 -19.58850 -19.11087 -17.86681 -17.56281 -16.83274 -16.58436 -16.31951 -16.01166 -15.30511 -15.09476 -14.88715 -14.83634 -14.60053 -14.21862 -13.97174 -13.86360 -13.55533 -13.33121 -13.10332 -13.07044 -12.64501 -12.52935 -12.22863 -12.00160 -11.84077 -11.68370 -11.58107 -11.53330 -11.11515 -10.95128 -10.93364 -10.92271 -10.78070 -10.67093 -10.51481 -10.22635 -10.09039 -9.57547 -9.51885 -9.16312 -8.99948 -8.47741 -8.21333 -8.01312 -6.04854 -4.14113 2.78227 3.29910 3.33250 3.35525 3.37546 3.46539 3.85976 3.99478 4.14194 4.23699 4.38290 4.43773 4.52175 4.62020 4.63952 4.82778 4.92505 5.00220 5.04283 5.12173 5.14415 5.23360 5.26433 5.34423 5.37203 5.45568 5.49606 5.55373 5.60800 5.66559 5.80651 5.87773 5.94729 6.08072 6.23995 6.36332 6.36804 6.51825 6.61191 6.63952 6.72273 6.92775 6.94672 7.13156 7.36441 7.44410 7.53750 7.84465 8.36742 8.40408 8.86627 8.99205 9.52853 11.02728 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.011889 B = 0.002494 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.538520 B =11225.201404 C =13064.870783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.501 4.501 8 H 0.060 0.940 9 C 0.027 3.973 10 C 0.163 3.837 11 N -0.705 5.705 12 C 0.502 3.498 13 O -0.564 6.564 14 C -0.137 4.137 15 C -0.109 4.109 16 C 0.078 3.922 17 H 0.083 0.917 18 C -0.151 4.151 19 C -0.143 4.143 20 C 0.070 3.930 21 H 0.079 0.921 22 C 0.238 3.762 23 O -0.375 6.375 24 C 0.017 3.983 25 C 0.017 3.983 26 O -0.369 6.369 27 O -0.356 6.356 28 C -0.210 4.210 29 C -0.148 4.148 30 H 0.262 0.738 31 H 0.068 0.932 32 H 0.038 0.962 33 H 0.401 0.599 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.111 0.889 45 H 0.102 0.898 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.064 0.936 49 H 0.063 0.937 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.462 -7.065 20.453 25.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.539 4.539 8 H 0.078 0.922 9 C 0.027 3.973 10 C 0.040 3.960 11 N -0.353 5.353 12 C 0.288 3.712 13 O -0.444 6.444 14 C -0.177 4.177 15 C -0.147 4.147 16 C 0.021 3.979 17 H 0.101 0.899 18 C -0.188 4.188 19 C -0.181 4.181 20 C 0.011 3.989 21 H 0.097 0.903 22 C 0.142 3.858 23 O -0.295 6.295 24 C -0.059 4.059 25 C -0.060 4.060 26 O -0.289 6.289 27 O -0.275 6.275 28 C -0.247 4.247 29 C -0.186 4.186 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.235 0.765 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.096 0.904 44 H 0.129 0.871 45 H 0.120 0.880 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.083 0.917 49 H 0.082 0.918 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 12.479 -7.042 20.596 25.090 hybrid contribution 0.778 1.090 -0.110 1.344 sum 13.257 -5.952 20.486 25.117 Atomic orbital electron populations 1.69979 1.05902 1.26957 1.48261 1.24987 0.94813 0.98966 0.94294 0.86691 0.79675 0.83151 0.78687 1.20275 1.21285 1.20050 1.20332 0.92685 0.88612 1.52228 0.92204 1.19033 0.98996 0.92946 0.86361 1.20949 0.85440 0.98175 0.91476 1.46015 1.11306 1.64649 1.13346 1.20619 0.90838 0.77416 0.82304 1.90634 1.28177 1.53753 1.71828 1.21596 0.96868 1.03716 0.95558 1.21687 0.96093 1.02672 0.94271 1.22900 0.94018 0.85492 0.95538 0.89930 1.23195 1.00539 1.01103 0.93983 1.23176 1.00603 0.94446 0.99855 1.23194 0.96409 0.96528 0.82723 0.90287 1.24145 0.97118 0.87173 0.77360 1.89187 1.77639 1.40518 1.22192 1.24436 0.97772 0.83499 1.00190 1.24254 1.02478 0.92453 0.86776 1.89034 1.94647 1.15224 1.30029 1.88515 1.78174 1.40157 1.20659 1.22975 0.99879 0.95743 1.06130 1.22494 0.91273 1.01785 1.03066 0.92827 0.91383 0.94395 0.76512 0.89553 0.88435 0.90731 0.90259 0.89937 0.89720 0.90228 0.89445 0.89302 0.90398 0.87129 0.88022 0.90432 0.90409 0.91706 0.91810 0.89718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.70 12.85 55.43 0.71 -23.99 16 2 C 0.07 1.99 5.44 -17.82 -0.10 1.89 16 3 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.50 -13.13 8.57 -34.44 -0.30 -13.42 16 8 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 9 C 0.03 0.66 1.40 -155.66 -0.22 0.44 16 10 C 0.16 3.82 5.50 -4.04 -0.02 3.79 16 11 N -0.70 -14.20 5.48 -60.30 -0.33 -14.53 16 12 C 0.50 9.65 7.83 -10.99 -0.09 9.56 16 13 O -0.56 -12.77 15.98 5.55 0.09 -12.68 16 14 C -0.14 -1.98 5.61 -27.89 -0.16 -2.14 16 15 C -0.11 -1.43 4.07 -26.73 -0.11 -1.54 16 16 C 0.08 0.84 3.52 -26.01 -0.09 0.75 16 17 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 18 C -0.15 -1.28 6.54 -24.78 -0.16 -1.45 16 19 C -0.14 -1.19 6.36 -24.48 -0.16 -1.35 16 20 C 0.07 0.76 3.47 -25.70 -0.09 0.67 16 21 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 22 C 0.24 2.46 3.74 37.16 0.14 2.60 16 23 O -0.37 -3.47 11.12 -59.04 -0.66 -4.12 16 24 C 0.02 0.11 7.95 38.17 0.30 0.41 16 25 C 0.02 0.13 8.07 38.17 0.31 0.44 16 26 O -0.37 -4.41 11.16 -62.66 -0.70 -5.11 16 27 O -0.36 -4.59 10.26 -41.14 -0.42 -5.01 16 28 C -0.21 -4.45 9.96 -26.73 -0.27 -4.72 16 29 C -0.15 -3.45 9.39 -26.73 -0.25 -3.70 16 30 H 0.26 7.13 8.32 -40.82 -0.34 6.79 16 31 H 0.07 1.83 8.14 -51.93 -0.42 1.40 16 32 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 33 H 0.40 7.43 8.33 -40.82 -0.34 7.09 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.10 1.44 7.88 -51.93 -0.41 1.03 16 36 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 37 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 38 H 0.08 0.72 7.85 -51.93 -0.41 0.31 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.60 8.06 -51.93 -0.42 0.18 16 41 H 0.09 0.66 8.14 -51.92 -0.42 0.23 16 42 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 48 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 49 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 50 H 0.08 2.09 8.14 -51.93 -0.42 1.67 16 LS Contribution 409.82 15.07 6.18 6.18 Total: -1.00 -32.45 409.82 -10.12 -42.58 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -8.72 Total: 8.52 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -1.25 Total: -7.76 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.38 Total: -38.52 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -1.69 Total: -26.92 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.45 -10.12 -42.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897634531.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.099 kcal (2) G-P(sol) polarization free energy of solvation -32.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds