Wall clock time and date at job start Tue Mar 31 2020 22:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00089 * 2 1 4 4 H 1.48501 * 109.47251 * 240.27613 * 3 2 1 5 5 H 1.48507 * 109.47039 * 0.27507 * 3 2 1 6 6 H 1.48496 * 109.47365 * 120.27402 * 3 2 1 7 7 C 1.37878 * 120.00024 * 180.27124 * 2 1 3 8 8 H 1.07995 * 120.00077 * 174.76259 * 7 2 1 9 9 C 1.50702 * 119.99988 * 354.76796 * 7 2 1 10 10 C 1.52999 * 115.55057 * 279.47679 * 9 7 2 11 11 N 1.46498 * 109.46988 * 294.82321 * 10 9 7 12 12 C 1.34778 * 120.00047 * 184.79029 * 11 10 9 13 13 O 1.21284 * 120.00029 * 0.02562 * 12 11 10 14 14 C 1.50696 * 120.00227 * 179.97438 * 12 11 10 15 15 C 1.52997 * 109.47327 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.47298 * 180.02562 * 15 14 12 17 17 H 1.08997 * 109.82376 * 305.56635 * 16 15 14 18 18 C 1.54380 * 109.82986 * 184.58748 * 16 15 14 19 19 C 1.55310 * 102.24885 * 219.12924 * 18 16 15 20 20 C 1.54944 * 100.94243 * 34.13460 * 19 18 16 21 21 H 1.09000 * 110.30934 * 82.47072 * 20 19 18 22 22 C 1.53001 * 110.31077 * 204.63775 * 20 19 18 23 23 O 1.43756 * 109.62928 * 296.53278 * 22 20 19 24 24 C 1.44785 * 104.81312 * 215.80468 * 23 22 20 25 25 C 1.54914 * 101.72211 * 36.09992 * 24 23 22 26 26 O 1.43365 * 109.63550 * 177.16515 * 22 20 19 27 27 O 1.43242 * 109.82683 * 66.45228 * 16 15 14 28 28 C 1.52995 * 117.49847 * 133.76581 * 9 7 2 29 29 C 1.52999 * 117.49568 * 65.14308 * 9 7 2 30 30 H 0.97002 * 120.00067 * 4.72607 * 1 2 3 31 31 H 1.09000 * 109.46795 * 54.82094 * 10 9 7 32 32 H 1.09001 * 109.47381 * 174.82139 * 10 9 7 33 33 H 0.97001 * 120.00211 * 4.78569 * 11 10 9 34 34 H 1.09002 * 109.47089 * 300.00319 * 14 12 11 35 35 H 1.09006 * 109.46898 * 60.00149 * 14 12 11 36 36 H 1.09002 * 109.47109 * 300.00076 * 15 14 12 37 37 H 1.08997 * 109.46942 * 60.00107 * 15 14 12 38 38 H 1.08996 * 110.84691 * 337.31883 * 18 16 15 39 39 H 1.08996 * 110.85032 * 100.94421 * 18 16 15 40 40 H 1.08994 * 111.12640 * 276.20940 * 19 18 16 41 41 H 1.09009 * 111.15680 * 152.06822 * 19 18 16 42 42 H 1.08998 * 109.62423 * 56.76828 * 22 20 19 43 43 H 1.09006 * 110.97518 * 277.99580 * 24 23 22 44 44 H 1.09003 * 111.01095 * 154.22900 * 24 23 22 45 45 H 1.09001 * 110.69654 * 206.04018 * 25 24 23 46 46 H 1.08997 * 110.83866 * 82.90734 * 25 24 23 47 47 H 1.09001 * 117.49821 * 0.02562 * 28 9 7 48 48 H 1.08997 * 117.49736 * 145.02130 * 28 9 7 49 49 H 1.09003 * 117.49831 * 214.98011 * 29 9 7 50 50 H 1.08998 * 117.50384 * 0.02562 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0979 1.6993 -1.2159 5 1 1.2842 2.7465 0.0067 6 1 3.1080 1.6935 1.2091 7 6 2.0046 -1.1940 -0.0057 8 1 3.0811 -1.1956 -0.0910 9 6 1.2558 -2.4970 0.1072 10 6 0.8390 -2.8980 1.5236 11 7 2.0347 -3.1538 2.3305 12 6 1.9113 -3.6167 3.5902 13 8 0.8103 -3.8219 4.0558 14 6 3.1413 -3.8804 4.4200 15 6 2.7253 -4.3966 5.7989 16 6 3.9740 -4.6637 6.6416 17 1 4.6450 -5.3349 6.1057 18 6 3.5697 -5.2928 7.9922 19 6 4.5431 -4.5987 8.9836 20 6 4.6674 -3.1950 8.3395 21 1 3.8257 -2.5680 8.6334 22 6 5.9879 -2.5386 8.7474 23 8 6.0037 -2.3285 10.1695 24 6 6.7084 -1.0768 10.3510 25 6 6.2317 -0.2660 9.1201 26 8 6.1182 -1.2703 8.0918 27 8 4.6439 -3.4291 6.9224 28 6 1.6387 -3.6179 -0.8611 29 6 0.3145 -2.8723 -1.0391 30 1 -0.4850 0.8372 -0.0692 31 1 0.2621 -2.0908 1.9748 32 1 0.2294 -3.8006 1.4812 33 1 2.9153 -2.9901 1.9581 34 1 3.7606 -4.6279 3.9243 35 1 3.7080 -2.9562 4.5334 36 1 2.1057 -3.6494 6.2949 37 1 2.1588 -5.3208 5.6851 38 1 2.5340 -5.0563 8.2357 39 1 3.7304 -6.3708 7.9816 40 1 5.5072 -5.1066 9.0081 41 1 4.1094 -4.5360 9.9818 42 1 6.8199 -3.1838 8.4655 43 1 7.7874 -1.2290 10.3239 44 1 6.4081 -0.5903 11.2790 45 1 6.9711 0.4859 8.8443 46 1 5.2649 0.1990 9.3128 47 1 2.4324 -3.4132 -1.5795 48 1 1.5938 -4.6415 -0.4891 49 1 -0.6015 -3.4054 -0.7842 50 1 0.2372 -2.1772 -1.8751 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897634531.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:07 Heat of formation + Delta-G solvation = -180.024221 kcal Electronic energy + Delta-G solvation = -29721.994557 eV Core-core repulsion = 25520.818679 eV Total energy + Delta-G solvation = -4201.175878 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.60549 -40.76090 -40.09457 -38.47949 -36.09177 -34.90668 -34.65128 -33.98631 -33.16106 -31.69427 -29.65819 -28.17617 -27.28223 -25.86150 -24.31967 -23.61620 -22.93950 -22.53170 -21.56192 -21.34052 -20.79076 -18.61231 -18.39735 -18.21064 -17.73016 -17.42918 -17.13391 -16.73402 -16.51684 -16.38857 -15.99889 -15.72476 -15.51883 -15.02693 -14.83613 -14.68475 -14.53766 -14.25491 -14.04088 -13.86699 -13.80218 -13.51507 -13.32891 -13.00136 -12.93826 -12.82007 -12.80417 -12.62396 -12.39392 -12.28823 -12.03694 -11.92122 -11.84769 -11.77850 -11.43777 -11.25100 -10.95200 -10.88484 -10.82478 -10.45833 -10.35746 -10.03982 -9.81404 -8.10830 -6.24581 1.41811 1.44438 1.50077 1.77093 2.11721 2.39200 2.45305 2.78050 3.17440 3.18518 3.48024 3.51053 3.62711 3.75324 3.77494 3.92280 3.97709 4.03879 4.09559 4.17007 4.23212 4.27498 4.29842 4.44001 4.52830 4.53916 4.57744 4.63330 4.66683 4.71650 4.73169 4.80286 4.86061 4.91088 4.96394 4.98780 4.99443 5.06335 5.10449 5.22616 5.26899 5.35307 5.54750 5.60862 5.71122 5.77947 5.94089 6.13354 6.35841 6.78533 6.85047 7.41591 7.45365 8.96469 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.011889 B = 0.002494 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.538520 B =11225.201404 C =13064.870783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.273 1.273 7 C -0.506 4.506 8 H 0.064 0.936 9 C 0.004 3.996 10 C 0.178 3.822 11 N -0.702 5.702 12 C 0.499 3.501 13 O -0.601 6.601 14 C -0.125 4.125 15 C -0.105 4.105 16 C 0.078 3.922 17 H 0.104 0.896 18 C -0.146 4.146 19 C -0.133 4.133 20 C 0.062 3.938 21 H 0.060 0.940 22 C 0.239 3.761 23 O -0.385 6.385 24 C 0.018 3.982 25 C 0.007 3.993 26 O -0.403 6.403 27 O -0.380 6.380 28 C -0.174 4.174 29 C -0.159 4.159 30 H 0.259 0.741 31 H 0.023 0.977 32 H 0.037 0.963 33 H 0.410 0.590 34 H 0.121 0.879 35 H 0.096 0.904 36 H 0.046 0.954 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.135 0.865 45 H 0.120 0.880 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.089 0.911 49 H 0.069 0.931 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.082 -8.304 21.448 28.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.177 4.177 3 Si 0.775 3.225 4 H -0.192 1.192 5 H -0.217 1.217 6 H -0.198 1.198 7 C -0.544 4.544 8 H 0.082 0.918 9 C 0.003 3.997 10 C 0.054 3.946 11 N -0.351 5.351 12 C 0.287 3.713 13 O -0.484 6.484 14 C -0.165 4.165 15 C -0.143 4.143 16 C 0.021 3.979 17 H 0.121 0.879 18 C -0.184 4.184 19 C -0.170 4.170 20 C 0.004 3.996 21 H 0.078 0.922 22 C 0.143 3.857 23 O -0.306 6.306 24 C -0.057 4.057 25 C -0.068 4.068 26 O -0.324 6.324 27 O -0.300 6.300 28 C -0.212 4.212 29 C -0.198 4.198 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.055 0.945 33 H 0.246 0.754 34 H 0.139 0.861 35 H 0.115 0.885 36 H 0.065 0.935 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.128 0.872 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.112 0.888 44 H 0.153 0.847 45 H 0.138 0.862 46 H 0.092 0.908 47 H 0.105 0.895 48 H 0.107 0.893 49 H 0.087 0.913 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.140 -8.282 21.594 27.643 hybrid contribution -0.056 1.502 -0.402 1.556 sum 15.083 -6.780 21.192 26.881 Atomic orbital electron populations 1.70107 1.07285 1.27350 1.49849 1.25716 0.95478 1.02128 0.94371 0.85755 0.78425 0.79422 0.78898 1.19212 1.21655 1.19839 1.20667 0.93037 0.89616 1.51054 0.91789 1.19052 1.00086 0.93727 0.86815 1.20523 0.86283 0.96364 0.91441 1.45949 1.10693 1.64812 1.13664 1.21499 0.91893 0.75985 0.81922 1.90615 1.30191 1.55164 1.72420 1.21607 0.94581 1.04734 0.95548 1.21666 0.97154 1.01839 0.93683 1.22976 0.93060 0.85332 0.96509 0.87870 1.23197 1.00176 1.02407 0.92578 1.23149 1.01311 0.92676 0.99894 1.23288 0.96225 0.97904 0.82216 0.92221 1.24128 0.96846 0.86823 0.77884 1.89165 1.78256 1.41799 1.21403 1.24662 0.98523 0.82143 1.00416 1.24493 1.03085 0.92384 0.86871 1.88994 1.94785 1.16552 1.32088 1.88484 1.78268 1.41256 1.21968 1.22966 0.98224 0.95905 1.04055 1.22430 0.92697 1.02374 1.02270 0.93219 0.95867 0.94508 0.75387 0.86119 0.88531 0.93466 0.89919 0.90641 0.87239 0.88812 0.88622 0.88646 0.88769 0.84738 0.86214 0.90760 0.89520 0.89285 0.91283 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.56 12.85 21.45 0.28 -52.29 16 2 C 0.02 1.29 5.44 84.65 0.46 1.75 16 3 Si 0.95 43.24 29.54 68.60 2.03 45.26 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.51 -26.43 8.57 25.60 0.22 -26.21 16 8 H 0.06 3.21 7.82 -2.91 -0.02 3.19 16 9 C 0.00 0.19 1.40 -52.93 -0.07 0.11 16 10 C 0.18 8.49 5.50 86.38 0.48 8.97 16 11 N -0.70 -28.06 5.48 -463.06 -2.54 -30.60 16 12 C 0.50 19.08 7.83 87.66 0.69 19.76 16 13 O -0.60 -27.76 15.98 -3.04 -0.05 -27.81 16 14 C -0.13 -3.45 5.61 29.85 0.17 -3.28 16 15 C -0.11 -2.68 4.07 30.59 0.12 -2.56 16 16 C 0.08 1.55 3.52 31.06 0.11 1.66 16 17 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 18 C -0.15 -2.19 6.54 31.86 0.21 -1.99 16 19 C -0.13 -1.96 6.36 32.05 0.20 -1.76 16 20 C 0.06 1.32 3.47 31.26 0.11 1.43 16 21 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 22 C 0.24 4.76 3.74 71.98 0.27 5.03 16 23 O -0.39 -6.61 11.12 -126.22 -1.40 -8.02 16 24 C 0.02 0.19 7.95 72.64 0.58 0.77 16 25 C 0.01 0.11 8.07 72.64 0.59 0.69 16 26 O -0.40 -9.54 11.16 -122.75 -1.37 -10.91 16 27 O -0.38 -9.52 10.26 -143.33 -1.47 -10.99 16 28 C -0.17 -7.06 9.96 30.59 0.30 -6.75 16 29 C -0.16 -7.43 9.39 30.59 0.29 -7.15 16 30 H 0.26 14.48 8.32 -92.71 -0.77 13.71 16 31 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.04 1.73 8.09 -2.39 -0.02 1.71 16 33 H 0.41 14.73 8.33 -92.71 -0.77 13.96 16 34 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.10 2.75 7.88 -2.38 -0.02 2.73 16 36 H 0.05 1.45 8.10 -2.39 -0.02 1.43 16 37 H 0.08 2.04 8.10 -2.39 -0.02 2.02 16 38 H 0.07 1.24 7.85 -2.39 -0.02 1.22 16 39 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.09 1.14 8.06 -2.39 -0.02 1.12 16 41 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 44 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 48 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 49 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 50 H 0.06 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -71.78 409.82 0.34 -71.45 By element: Atomic # 1 Polarization: 33.26 SS G_CDS: 0.15 Total: 33.41 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 4.72 Total: -9.51 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -2.26 Total: -82.89 kcal Atomic # 8 Polarization: -53.43 SS G_CDS: -4.29 Total: -57.72 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -71.78 0.34 -71.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897634531.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.576 kcal (2) G-P(sol) polarization free energy of solvation -71.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds