Wall clock time and date at job start Tue Mar 31 2020 23:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00302 * 2 1 4 4 N 1.46495 * 109.47325 * 124.99696 * 3 2 1 5 5 C 1.46502 * 119.99729 * 90.00405 * 4 3 2 6 6 C 1.50697 * 109.47313 * 89.99855 * 5 4 3 7 7 H 1.08003 * 120.00042 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99870 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00339 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 120.00003 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46826 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47153 * 120.00004 * 10 8 6 13 13 H 1.48503 * 109.46973 * 239.99984 * 10 8 6 14 14 C 1.34773 * 120.00226 * 269.99982 * 4 3 2 15 15 O 1.21276 * 120.00044 * 180.02562 * 14 4 3 16 16 C 1.50698 * 119.99902 * 359.97438 * 14 4 3 17 17 C 1.53003 * 109.47102 * 180.02562 * 16 14 4 18 18 C 1.53001 * 109.46751 * 180.02562 * 17 16 14 19 19 H 1.09001 * 110.33696 * 54.30061 * 18 17 16 20 20 C 1.54483 * 110.36875 * 176.55021 * 18 17 16 21 21 C 1.54686 * 103.97740 * 142.73677 * 20 18 17 22 22 C 1.54475 * 104.08043 * 0.13861 * 21 20 18 23 23 H 1.08996 * 110.37329 * 94.76242 * 22 21 20 24 24 C 1.53009 * 110.46332 * 217.05005 * 22 21 20 25 25 O 1.43749 * 109.63317 * 296.24922 * 24 22 21 26 26 C 1.44776 * 104.81847 * 215.81070 * 25 24 22 27 27 C 1.54917 * 101.72276 * 36.10572 * 26 25 24 28 28 O 1.43372 * 109.62696 * 176.88949 * 24 22 21 29 29 O 1.44423 * 104.80413 * 335.92542 * 22 21 20 30 30 H 1.08002 * 120.00352 * 180.02562 * 1 2 3 31 31 H 1.08005 * 119.99880 * 359.72812 * 1 2 3 32 32 H 1.07998 * 120.00195 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.46714 * 244.99836 * 3 2 1 34 34 H 1.09000 * 109.46958 * 4.99415 * 3 2 1 35 35 H 1.09005 * 109.46656 * 209.99745 * 5 4 3 36 36 H 1.08996 * 109.47081 * 329.99147 * 5 4 3 37 37 H 0.96997 * 120.00548 * 180.02562 * 9 8 6 38 38 H 1.09002 * 109.47742 * 300.00286 * 16 14 4 39 39 H 1.09005 * 109.46818 * 60.00122 * 16 14 4 40 40 H 1.08997 * 109.47283 * 300.00291 * 17 16 14 41 41 H 1.08994 * 109.46762 * 60.00370 * 17 16 14 42 42 H 1.08997 * 110.51016 * 261.45403 * 20 18 17 43 43 H 1.08998 * 110.51200 * 24.16827 * 20 18 17 44 44 H 1.09004 * 110.58122 * 241.44323 * 21 20 18 45 45 H 1.09005 * 110.54105 * 118.80389 * 21 20 18 46 46 H 1.08993 * 109.62877 * 56.49697 * 24 22 21 47 47 H 1.08998 * 110.97773 * 278.00167 * 26 25 24 48 48 H 1.09003 * 110.98112 * 154.21721 * 26 25 24 49 49 H 1.09000 * 110.69534 * 206.04832 * 27 26 25 50 50 H 1.08991 * 110.69675 * 82.83364 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 4.3589 0.8257 0.9694 6 6 5.2616 1.9480 0.5259 7 1 4.8585 2.9392 0.3789 8 6 6.6019 1.7094 0.3077 9 7 7.0928 0.5026 0.4871 10 14 7.7207 3.1004 -0.2428 11 1 6.9295 4.3505 -0.3717 12 1 8.7972 3.2966 0.7610 13 1 8.3245 2.7597 -1.5561 14 6 2.5937 1.8224 2.3213 15 8 3.3639 1.8450 3.2578 16 6 1.1896 2.3437 2.4877 17 6 0.9961 2.8388 3.9225 18 6 -0.4297 3.3675 4.0915 19 1 -1.1529 2.6096 3.7905 20 6 -0.6751 3.7933 5.5561 21 6 -1.5634 5.0538 5.4348 22 6 -1.7511 5.2363 3.9124 23 1 -2.6782 4.7657 3.5853 24 6 -1.7517 6.7223 3.5478 25 8 -2.8784 7.3699 4.1622 26 6 -3.3060 8.3622 3.1985 27 6 -3.0492 7.6299 1.8577 28 8 -1.8539 6.8691 2.1253 29 8 -0.6138 4.5734 3.3183 30 1 -0.5401 -0.9353 0.0004 31 1 -0.5400 0.9354 0.0044 32 1 1.8500 -0.9353 0.0004 33 1 2.6213 1.4025 -0.9314 34 1 1.3586 2.1317 0.0895 35 1 4.7141 0.4279 1.9201 36 1 4.3666 0.0351 0.2192 37 1 8.0358 0.3348 0.3340 38 1 1.0232 3.1678 1.7939 39 1 0.4782 1.5444 2.2797 40 1 1.1625 2.0150 4.6166 41 1 1.7074 3.6381 4.1300 42 1 -1.1976 3.0065 6.1001 43 1 0.2676 4.0367 6.0462 44 1 -1.0601 5.9201 5.8642 45 1 -2.5253 4.8922 5.9215 46 1 -0.8296 7.1857 3.8985 47 1 -2.6994 9.2648 3.2725 48 1 -4.3641 8.5939 3.3203 49 1 -2.8781 8.3462 1.0542 50 1 -3.8805 6.9682 1.6149 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897824256.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:51 Heat of formation + Delta-G solvation = -152.448143 kcal Electronic energy + Delta-G solvation = -30178.139635 eV Core-core repulsion = 25978.159546 eV Total energy + Delta-G solvation = -4199.980090 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.88246 -39.52755 -38.84081 -35.62891 -35.38964 -33.73122 -33.03887 -32.29355 -31.97251 -30.89447 -28.77476 -27.40065 -25.80017 -25.05507 -23.78065 -23.18265 -22.09574 -21.39273 -20.84686 -19.85041 -18.19413 -17.79462 -17.26293 -16.64508 -16.55231 -16.37631 -16.28666 -15.55121 -15.28743 -15.03103 -14.68407 -14.44115 -14.21801 -14.07117 -13.99947 -13.70187 -13.34509 -13.10098 -12.92851 -12.83764 -12.55178 -12.18106 -12.06014 -11.87615 -11.71980 -11.65810 -11.43786 -11.16428 -11.04964 -10.94499 -10.84812 -10.75840 -10.67420 -10.63417 -10.46959 -10.11509 -10.05994 -9.72459 -9.57045 -9.25281 -8.75166 -8.38951 -7.60368 -5.99610 -4.03798 2.44703 2.79956 3.33415 3.40652 3.44263 3.45197 3.56080 3.98752 4.07222 4.13291 4.36873 4.45155 4.49191 4.52763 4.62079 4.71599 4.80413 4.94350 5.00538 5.09627 5.13611 5.17340 5.22850 5.24496 5.34096 5.38304 5.39153 5.45751 5.57083 5.61636 5.65982 5.71071 5.74076 5.81286 5.96581 5.97438 6.09483 6.20332 6.31300 6.46257 6.62942 6.80760 6.81861 6.92376 7.14266 7.50694 7.62087 7.97626 8.29528 8.50685 8.96874 9.19363 9.61399 11.08508 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.011755 B = 0.002572 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.342562 B =10882.309627 C =11450.924275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C 0.135 3.865 4 N -0.596 5.596 5 C 0.245 3.755 6 C -0.523 4.523 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.896 5.896 10 Si 0.897 3.103 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.284 1.284 14 C 0.507 3.493 15 O -0.544 6.544 16 C -0.139 4.139 17 C -0.095 4.095 18 C 0.075 3.925 19 H 0.070 0.930 20 C -0.151 4.151 21 C -0.142 4.142 22 C 0.065 3.935 23 H 0.075 0.925 24 C 0.242 3.758 25 O -0.374 6.374 26 C 0.017 3.983 27 C 0.017 3.983 28 O -0.369 6.369 29 O -0.349 6.349 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.043 0.957 36 H 0.031 0.969 37 H 0.262 0.738 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.093 0.907 47 H 0.079 0.921 48 H 0.111 0.889 49 H 0.102 0.898 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.553 10.526 5.110 28.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.173 4.173 3 C 0.011 3.989 4 N -0.327 5.327 5 C 0.126 3.874 6 C -0.562 4.562 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.535 5.535 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.210 1.210 14 C 0.294 3.706 15 O -0.422 6.422 16 C -0.179 4.179 17 C -0.133 4.133 18 C 0.017 3.983 19 H 0.088 0.912 20 C -0.189 4.189 21 C -0.180 4.180 22 C 0.006 3.994 23 H 0.093 0.907 24 C 0.146 3.854 25 O -0.295 6.295 26 C -0.060 4.060 27 C -0.059 4.059 28 O -0.290 6.290 29 O -0.268 6.268 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.128 0.872 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.072 0.928 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.111 0.889 47 H 0.097 0.903 48 H 0.129 0.871 49 H 0.120 0.880 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -24.742 10.370 5.466 27.378 hybrid contribution 0.441 0.686 -0.370 0.896 sum -24.301 11.056 5.096 27.180 Atomic orbital electron populations 1.23759 0.95729 1.01490 1.02896 1.23563 0.96082 0.99938 0.97765 1.20590 0.92378 0.94135 0.91840 1.48210 1.14333 1.61052 1.09120 1.19276 0.75538 0.94511 0.98110 1.21495 0.93409 0.96027 1.45268 0.92383 1.24938 0.97923 0.95764 0.95551 1.69944 1.13952 1.20204 1.49429 0.86453 0.80634 0.82321 0.78095 1.19757 1.20913 1.21014 1.20399 0.88983 0.78280 0.82900 1.90650 1.55766 1.56153 1.39662 1.21695 0.95618 1.01910 0.98681 1.21393 0.93678 1.01655 0.96531 1.23141 0.98128 0.87408 0.89574 0.91215 1.23044 1.00911 0.97420 0.97520 1.22869 1.00869 0.98968 0.95269 1.23173 0.91432 0.91929 0.92860 0.90683 1.24038 0.90531 0.92413 0.78400 1.89190 1.48471 1.50917 1.40904 1.24441 1.02354 0.92490 0.86674 1.24247 0.88577 0.94900 0.98209 1.89038 1.43021 1.75125 1.21793 1.89224 1.47760 1.35534 1.54302 0.88817 0.88646 0.87204 0.89139 0.90886 0.93914 0.95118 0.92847 0.88972 0.89770 0.89857 0.90212 0.90312 0.89984 0.90417 0.90205 0.88947 0.90323 0.87143 0.88007 0.90570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.41 13.86 29.02 0.40 -2.01 16 2 C -0.15 -2.27 9.74 -36.02 -0.35 -2.62 16 3 C 0.13 2.30 5.65 -5.19 -0.03 2.27 16 4 N -0.60 -13.05 2.44 -176.44 -0.43 -13.48 16 5 C 0.24 6.55 5.16 -5.19 -0.03 6.53 16 6 C -0.52 -15.19 9.39 -34.44 -0.32 -15.51 16 7 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 10 Si 0.90 22.35 29.54 -169.99 -5.02 17.33 16 11 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 14 C 0.51 10.94 7.67 -10.99 -0.08 10.86 16 15 O -0.54 -14.03 15.56 5.56 0.09 -13.94 16 16 C -0.14 -2.22 4.18 -27.88 -0.12 -2.34 16 17 C -0.09 -1.38 4.14 -26.73 -0.11 -1.49 16 18 C 0.07 0.88 3.26 -25.95 -0.08 0.80 16 19 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 20 C -0.15 -1.47 6.65 -25.07 -0.17 -1.63 16 21 C -0.14 -1.30 6.43 -25.07 -0.16 -1.46 16 22 C 0.06 0.71 3.31 -25.95 -0.09 0.62 16 23 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 24 C 0.24 2.58 3.65 37.16 0.14 2.72 16 25 O -0.37 -3.48 11.13 -59.04 -0.66 -4.13 16 26 C 0.02 0.10 7.95 38.17 0.30 0.40 16 27 C 0.02 0.12 8.08 38.17 0.31 0.43 16 28 O -0.37 -4.30 11.16 -62.52 -0.70 -5.00 16 29 O -0.35 -4.73 10.70 -40.59 -0.43 -5.16 16 30 H 0.09 0.99 8.06 -52.49 -0.42 0.56 16 31 H 0.10 1.04 7.84 -52.48 -0.41 0.63 16 32 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.09 1.60 8.07 -51.93 -0.42 1.18 16 34 H 0.07 1.09 6.09 -51.93 -0.32 0.77 16 35 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 36 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.09 1.46 7.22 -51.93 -0.37 1.08 16 39 H 0.08 1.17 7.54 -51.93 -0.39 0.78 16 40 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 41 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 0.83 7.87 -51.93 -0.41 0.42 16 44 H 0.08 0.70 7.86 -51.93 -0.41 0.29 16 45 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.09 1.00 8.12 -51.93 -0.42 0.58 16 47 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 409.37 15.07 6.17 6.17 Total: -1.00 -35.37 409.37 -9.31 -44.67 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -8.57 Total: 0.69 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -0.49 Total: -0.79 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.31 Total: -39.83 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -1.70 Total: -28.24 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.37 -9.31 -44.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897824256.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.773 kcal (2) G-P(sol) polarization free energy of solvation -35.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds