Wall clock time and date at job start Tue Mar 31 2020 23:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00302 * 2 1 4 4 N 1.46495 * 109.47325 * 124.99696 * 3 2 1 5 5 C 1.46502 * 119.99729 * 90.00405 * 4 3 2 6 6 C 1.50697 * 109.47313 * 89.99855 * 5 4 3 7 7 H 1.08003 * 120.00042 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99870 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00339 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 120.00003 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46826 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47153 * 120.00004 * 10 8 6 13 13 H 1.48503 * 109.46973 * 239.99984 * 10 8 6 14 14 C 1.34773 * 120.00226 * 269.99982 * 4 3 2 15 15 O 1.21276 * 120.00044 * 180.02562 * 14 4 3 16 16 C 1.50698 * 119.99902 * 359.97438 * 14 4 3 17 17 C 1.53003 * 109.47102 * 180.02562 * 16 14 4 18 18 C 1.53001 * 109.46751 * 180.02562 * 17 16 14 19 19 H 1.09001 * 110.33696 * 54.30061 * 18 17 16 20 20 C 1.54483 * 110.36875 * 176.55021 * 18 17 16 21 21 C 1.54686 * 103.97740 * 142.73677 * 20 18 17 22 22 C 1.54475 * 104.08043 * 0.13861 * 21 20 18 23 23 H 1.08996 * 110.37329 * 94.76242 * 22 21 20 24 24 C 1.53009 * 110.46332 * 217.05005 * 22 21 20 25 25 O 1.43749 * 109.63317 * 296.24922 * 24 22 21 26 26 C 1.44776 * 104.81847 * 215.81070 * 25 24 22 27 27 C 1.54917 * 101.72276 * 36.10572 * 26 25 24 28 28 O 1.43372 * 109.62696 * 176.88949 * 24 22 21 29 29 O 1.44423 * 104.80413 * 335.92542 * 22 21 20 30 30 H 1.08002 * 120.00352 * 180.02562 * 1 2 3 31 31 H 1.08005 * 119.99880 * 359.72812 * 1 2 3 32 32 H 1.07998 * 120.00195 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.46714 * 244.99836 * 3 2 1 34 34 H 1.09000 * 109.46958 * 4.99415 * 3 2 1 35 35 H 1.09005 * 109.46656 * 209.99745 * 5 4 3 36 36 H 1.08996 * 109.47081 * 329.99147 * 5 4 3 37 37 H 0.96997 * 120.00548 * 180.02562 * 9 8 6 38 38 H 1.09002 * 109.47742 * 300.00286 * 16 14 4 39 39 H 1.09005 * 109.46818 * 60.00122 * 16 14 4 40 40 H 1.08997 * 109.47283 * 300.00291 * 17 16 14 41 41 H 1.08994 * 109.46762 * 60.00370 * 17 16 14 42 42 H 1.08997 * 110.51016 * 261.45403 * 20 18 17 43 43 H 1.08998 * 110.51200 * 24.16827 * 20 18 17 44 44 H 1.09004 * 110.58122 * 241.44323 * 21 20 18 45 45 H 1.09005 * 110.54105 * 118.80389 * 21 20 18 46 46 H 1.08993 * 109.62877 * 56.49697 * 24 22 21 47 47 H 1.08998 * 110.97773 * 278.00167 * 26 25 24 48 48 H 1.09003 * 110.98112 * 154.21721 * 26 25 24 49 49 H 1.09000 * 110.69534 * 206.04832 * 27 26 25 50 50 H 1.08991 * 110.69675 * 82.83364 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 4.3589 0.8257 0.9694 6 6 5.2616 1.9480 0.5259 7 1 4.8585 2.9392 0.3789 8 6 6.6019 1.7094 0.3077 9 7 7.0928 0.5026 0.4871 10 14 7.7207 3.1004 -0.2428 11 1 6.9295 4.3505 -0.3717 12 1 8.7972 3.2966 0.7610 13 1 8.3245 2.7597 -1.5561 14 6 2.5937 1.8224 2.3213 15 8 3.3639 1.8450 3.2578 16 6 1.1896 2.3437 2.4877 17 6 0.9961 2.8388 3.9225 18 6 -0.4297 3.3675 4.0915 19 1 -1.1529 2.6096 3.7905 20 6 -0.6751 3.7933 5.5561 21 6 -1.5634 5.0538 5.4348 22 6 -1.7511 5.2363 3.9124 23 1 -2.6782 4.7657 3.5853 24 6 -1.7517 6.7223 3.5478 25 8 -2.8784 7.3699 4.1622 26 6 -3.3060 8.3622 3.1985 27 6 -3.0492 7.6299 1.8577 28 8 -1.8539 6.8691 2.1253 29 8 -0.6138 4.5734 3.3183 30 1 -0.5401 -0.9353 0.0004 31 1 -0.5400 0.9354 0.0044 32 1 1.8500 -0.9353 0.0004 33 1 2.6213 1.4025 -0.9314 34 1 1.3586 2.1317 0.0895 35 1 4.7141 0.4279 1.9201 36 1 4.3666 0.0351 0.2192 37 1 8.0358 0.3348 0.3340 38 1 1.0232 3.1678 1.7939 39 1 0.4782 1.5444 2.2797 40 1 1.1625 2.0150 4.6166 41 1 1.7074 3.6381 4.1300 42 1 -1.1976 3.0065 6.1001 43 1 0.2676 4.0367 6.0462 44 1 -1.0601 5.9201 5.8642 45 1 -2.5253 4.8922 5.9215 46 1 -0.8296 7.1857 3.8985 47 1 -2.6994 9.2648 3.2725 48 1 -4.3641 8.5939 3.3203 49 1 -2.8781 8.3462 1.0542 50 1 -3.8805 6.9682 1.6149 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897824256.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:50 Heat of formation + Delta-G solvation = -175.843438 kcal Electronic energy + Delta-G solvation = -30179.154132 eV Core-core repulsion = 25978.159546 eV Total energy + Delta-G solvation = -4200.994586 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.58997 -40.84874 -40.05819 -37.24222 -36.08319 -35.31975 -34.57552 -33.64664 -33.10885 -31.70925 -30.01355 -28.96703 -27.06304 -26.44083 -24.85212 -24.22534 -23.27992 -22.33760 -21.78943 -21.06373 -19.78669 -18.60902 -18.49583 -18.13382 -17.74557 -17.40167 -17.29507 -17.09497 -16.56416 -16.27307 -15.98773 -15.60489 -15.43584 -15.09745 -14.72275 -14.69694 -14.46851 -14.43826 -14.18641 -13.87462 -13.75020 -13.70140 -13.47481 -13.10020 -12.91211 -12.79634 -12.71687 -12.60214 -12.42595 -12.30727 -12.19283 -12.16418 -11.93175 -11.83419 -11.67102 -11.58460 -11.23295 -10.89109 -10.66756 -10.64518 -10.52956 -10.26533 -9.45676 -8.23799 -6.38639 1.33510 1.35103 1.37004 1.49436 1.85262 2.13643 2.34308 2.51843 2.75961 3.05276 3.23246 3.52248 3.61011 3.71917 3.81404 3.87133 3.98830 4.02169 4.03990 4.08122 4.15297 4.17947 4.22803 4.33406 4.40360 4.52055 4.56586 4.58465 4.61673 4.70203 4.73069 4.79999 4.84565 4.92927 4.96868 5.00758 5.08540 5.09935 5.11674 5.16574 5.23287 5.29916 5.55561 5.74448 5.83320 5.84398 5.86842 6.05644 6.05757 6.68704 6.79959 7.27109 7.48916 8.83557 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.011755 B = 0.002572 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.342562 B =10882.309627 C =11450.924275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.189 4.189 3 C 0.134 3.866 4 N -0.602 5.602 5 C 0.261 3.739 6 C -0.542 4.542 7 H 0.050 0.950 8 C 0.007 3.993 9 N -0.928 5.928 10 Si 0.968 3.032 11 H -0.269 1.269 12 H -0.280 1.280 13 H -0.267 1.267 14 C 0.496 3.504 15 O -0.598 6.598 16 C -0.120 4.120 17 C -0.091 4.091 18 C 0.079 3.921 19 H 0.092 0.908 20 C -0.149 4.149 21 C -0.135 4.135 22 C 0.062 3.938 23 H 0.083 0.917 24 C 0.242 3.758 25 O -0.383 6.383 26 C 0.014 3.986 27 C 0.010 3.990 28 O -0.401 6.401 29 O -0.377 6.377 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.100 0.900 35 H -0.003 1.003 36 H 0.021 0.979 37 H 0.267 0.733 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.082 0.918 41 H 0.051 0.949 42 H 0.102 0.898 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.099 0.901 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.139 0.861 49 H 0.119 0.881 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.724 11.768 4.613 31.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.208 4.208 3 C 0.012 3.988 4 N -0.332 5.332 5 C 0.140 3.860 6 C -0.581 4.581 7 H 0.069 0.931 8 C -0.192 4.192 9 N -0.568 5.568 10 Si 0.793 3.207 11 H -0.193 1.193 12 H -0.206 1.206 13 H -0.192 1.192 14 C 0.286 3.714 15 O -0.480 6.480 16 C -0.160 4.160 17 C -0.129 4.129 18 C 0.022 3.978 19 H 0.110 0.890 20 C -0.187 4.187 21 C -0.173 4.173 22 C 0.004 3.996 23 H 0.101 0.899 24 C 0.146 3.854 25 O -0.304 6.304 26 C -0.061 4.061 27 C -0.066 4.066 28 O -0.322 6.322 29 O -0.297 6.297 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.118 0.882 35 H 0.015 0.985 36 H 0.039 0.961 37 H 0.076 0.924 38 H 0.117 0.883 39 H 0.133 0.867 40 H 0.100 0.900 41 H 0.069 0.931 42 H 0.120 0.880 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.117 0.883 46 H 0.098 0.902 47 H 0.105 0.895 48 H 0.157 0.843 49 H 0.137 0.863 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -27.967 11.616 4.936 30.683 hybrid contribution 1.332 0.302 -0.250 1.388 sum -26.635 11.918 4.686 29.554 Atomic orbital electron populations 1.24059 0.94366 1.03536 0.97574 1.23226 0.97050 0.97926 1.02599 1.20793 0.91885 0.96744 0.89369 1.48252 1.13328 1.60576 1.11006 1.18715 0.78365 0.93859 0.95064 1.21731 0.94441 0.96107 1.45817 0.93124 1.25870 0.99474 0.98493 0.95340 1.70057 1.14627 1.22219 1.49910 0.85357 0.78267 0.78912 0.78209 1.19298 1.20579 1.19206 1.21464 0.90904 0.77231 0.81846 1.90613 1.57781 1.58220 1.41387 1.21644 0.91832 1.02634 0.99851 1.21338 0.95302 1.00752 0.95522 1.23133 0.96230 0.87575 0.90879 0.88996 1.23046 1.00927 0.98402 0.96283 1.22850 1.01634 0.98515 0.94305 1.23295 0.90769 0.91873 0.93682 0.89946 1.23927 0.90656 0.92459 0.78351 1.89171 1.47911 1.51652 1.41659 1.24693 1.04155 0.91889 0.85356 1.24519 0.87525 0.95234 0.99310 1.89002 1.45025 1.75951 1.22235 1.89189 1.49015 1.36293 1.55160 0.86574 0.86527 0.88836 0.90543 0.88155 0.98497 0.96090 0.92364 0.88262 0.86722 0.89993 0.93056 0.87996 0.91025 0.90727 0.88278 0.90179 0.89530 0.84323 0.86347 0.89644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 13.86 67.79 0.94 -2.26 16 2 C -0.19 -5.35 9.74 25.65 0.25 -5.10 16 3 C 0.13 4.56 5.65 85.64 0.48 5.05 16 4 N -0.60 -27.31 2.44 -830.51 -2.03 -29.33 16 5 C 0.26 14.84 5.16 85.63 0.44 15.28 16 6 C -0.54 -32.76 9.39 25.60 0.24 -32.52 16 7 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 8 C 0.01 0.42 5.46 84.65 0.46 0.88 16 9 N -0.93 -57.82 13.29 21.45 0.28 -57.53 16 10 Si 0.97 46.58 29.54 68.60 2.03 48.61 16 11 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 13 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 14 C 0.50 22.06 7.67 87.66 0.67 22.73 16 15 O -0.60 -32.59 15.56 -3.02 -0.05 -32.64 16 16 C -0.12 -3.72 4.18 29.85 0.12 -3.60 16 17 C -0.09 -2.64 4.14 30.60 0.13 -2.51 16 18 C 0.08 1.72 3.26 31.10 0.10 1.82 16 19 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 20 C -0.15 -2.62 6.65 31.67 0.21 -2.41 16 21 C -0.14 -2.22 6.43 31.67 0.20 -2.02 16 22 C 0.06 1.25 3.31 31.10 0.10 1.35 16 23 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 24 C 0.24 4.95 3.65 71.99 0.26 5.21 16 25 O -0.38 -6.44 11.13 -126.22 -1.40 -7.85 16 26 C 0.01 0.14 7.95 72.64 0.58 0.72 16 27 C 0.01 0.12 8.08 72.64 0.59 0.71 16 28 O -0.40 -8.94 11.16 -122.89 -1.37 -10.32 16 29 O -0.38 -9.74 10.70 -143.86 -1.54 -11.28 16 30 H 0.12 1.92 8.06 -2.91 -0.02 1.89 16 31 H 0.12 1.93 7.84 -2.91 -0.02 1.91 16 32 H 0.09 2.94 8.06 -2.91 -0.02 2.92 16 33 H 0.08 2.76 8.07 -2.39 -0.02 2.74 16 34 H 0.10 2.81 6.09 -2.39 -0.01 2.80 16 35 H 0.00 -0.20 7.42 -2.38 -0.02 -0.22 16 36 H 0.02 1.21 8.07 -2.39 -0.02 1.19 16 37 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 38 H 0.10 2.99 7.22 -2.39 -0.02 2.97 16 39 H 0.11 2.85 7.54 -2.38 -0.02 2.84 16 40 H 0.08 2.37 8.10 -2.39 -0.02 2.35 16 41 H 0.05 1.76 8.10 -2.39 -0.02 1.74 16 42 H 0.10 1.32 8.14 -2.39 -0.02 1.31 16 43 H 0.07 1.41 7.87 -2.39 -0.02 1.39 16 44 H 0.07 1.26 7.86 -2.38 -0.02 1.25 16 45 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 46 H 0.08 1.76 8.12 -2.39 -0.02 1.74 16 47 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.14 0.54 8.14 -2.39 -0.02 0.52 16 49 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -81.53 409.37 2.61 -78.92 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.90 Total: 18.07 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 5.79 Total: 3.34 kcal Atomic # 7 Polarization: -85.12 SS G_CDS: -1.74 Total: -86.87 kcal Atomic # 8 Polarization: -57.72 SS G_CDS: -4.36 Total: -62.08 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -81.53 2.61 -78.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897824256.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.923 kcal (2) G-P(sol) polarization free energy of solvation -81.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds