Wall clock time and date at job start Tue Mar 31 2020 23:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 N 1.46495 * 109.47260 * 124.99791 * 3 2 1 5 5 C 1.46500 * 119.99979 * 270.00170 * 4 3 2 6 6 C 1.50695 * 109.47171 * 89.99884 * 5 4 3 7 7 H 1.08003 * 120.00390 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00219 * 179.97438 * 6 5 4 9 9 N 1.31524 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00443 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46961 * 90.00187 * 10 8 6 12 12 H 1.48497 * 109.47128 * 210.00522 * 10 8 6 13 13 H 1.48502 * 109.47050 * 330.00374 * 10 8 6 14 14 C 1.34780 * 119.99958 * 90.00186 * 4 3 2 15 15 O 1.21278 * 120.00078 * 179.97438 * 14 4 3 16 16 C 1.50702 * 119.99806 * 359.97438 * 14 4 3 17 17 C 1.53004 * 109.46983 * 180.02562 * 16 14 4 18 18 C 1.53000 * 109.46852 * 180.02562 * 17 16 14 19 19 H 1.08997 * 109.82380 * 54.29373 * 18 17 16 20 20 C 1.54382 * 109.82873 * 175.18378 * 18 17 16 21 21 C 1.55304 * 102.25320 * 140.86492 * 20 18 17 22 22 C 1.54947 * 100.94206 * 325.86958 * 21 20 18 23 23 H 1.08997 * 110.30973 * 277.52365 * 22 21 20 24 24 C 1.53008 * 110.30965 * 155.45850 * 22 21 20 25 25 O 1.43754 * 109.62844 * 298.90486 * 24 22 21 26 26 C 1.44585 * 104.91740 * 215.71039 * 25 24 22 27 27 C 1.54914 * 101.63584 * 36.26640 * 26 25 24 28 28 O 1.43357 * 109.63215 * 179.69044 * 24 22 21 29 29 O 1.43242 * 109.82649 * 293.40779 * 18 17 16 30 30 H 1.08005 * 119.99846 * 180.02562 * 1 2 3 31 31 H 1.07995 * 120.00080 * 359.72973 * 1 2 3 32 32 H 1.07999 * 120.00108 * 180.02562 * 2 1 3 33 33 H 1.08999 * 109.47249 * 245.00440 * 3 2 1 34 34 H 1.09006 * 109.47239 * 4.99581 * 3 2 1 35 35 H 1.08998 * 109.46608 * 209.99924 * 5 4 3 36 36 H 1.09004 * 109.47086 * 329.99582 * 5 4 3 37 37 H 0.96999 * 119.99458 * 179.97438 * 9 8 6 38 38 H 1.09010 * 109.46984 * 300.00073 * 16 14 4 39 39 H 1.09000 * 109.47408 * 60.00178 * 16 14 4 40 40 H 1.08997 * 109.46927 * 299.99881 * 17 16 14 41 41 H 1.09000 * 109.47195 * 59.99691 * 17 16 14 42 42 H 1.08998 * 110.84932 * 259.06137 * 20 18 17 43 43 H 1.09002 * 110.84658 * 22.67720 * 20 18 17 44 44 H 1.09007 * 111.12451 * 83.78845 * 21 20 18 45 45 H 1.08999 * 111.13107 * 207.90565 * 21 20 18 46 46 H 1.09000 * 109.62516 * 59.29571 * 24 22 21 47 47 H 1.09002 * 111.08843 * 278.15792 * 26 25 24 48 48 H 1.08997 * 110.98102 * 154.32901 * 26 25 24 49 49 H 1.08999 * 110.69471 * 205.95900 * 27 26 25 50 50 H 1.09004 * 110.69432 * 82.75788 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5588 1.8650 2.4248 6 6 1.9751 0.7519 3.2562 7 1 1.9328 -0.2523 2.8610 8 6 1.4961 1.0152 4.5220 9 7 1.5480 2.2380 5.0036 10 14 0.7733 -0.3647 5.5530 11 1 1.8485 -0.9946 6.3606 12 1 -0.2673 0.1863 6.4578 13 1 0.1640 -1.3828 4.6600 14 6 4.2497 0.8663 0.9824 15 8 5.0200 0.8890 1.9189 16 6 4.6969 0.3175 -0.3480 17 6 6.1531 -0.1411 -0.2470 18 6 6.6073 -0.6977 -1.5978 19 1 6.4306 0.0405 -2.3801 20 6 8.1091 -1.0509 -1.5405 21 6 8.1689 -2.3702 -2.3577 22 6 6.8045 -3.0059 -1.9901 23 1 6.8741 -3.5247 -1.0341 24 6 6.3568 -3.9739 -3.0872 25 8 6.1977 -3.2606 -4.3251 26 6 5.0691 -3.8893 -4.9745 27 6 4.1563 -4.2169 -3.7665 28 8 5.0978 -4.5586 -2.7293 29 8 5.8888 -1.9010 -1.8939 30 1 -0.5400 -0.9354 0.0004 31 1 -0.5400 0.9352 0.0044 32 1 1.8501 -0.9353 -0.0004 33 1 2.6213 1.4027 -0.9314 34 1 1.3586 2.1317 0.0895 35 1 3.4131 2.2977 2.9452 36 1 1.8029 2.6341 2.2652 37 1 1.2107 2.4232 5.8940 38 1 4.0677 -0.5296 -0.6216 39 1 4.6120 1.0937 -1.1084 40 1 6.7825 0.7057 0.0268 41 1 6.2377 -0.9175 0.5134 42 1 8.7088 -0.2736 -2.0141 43 1 8.4296 -1.2168 -0.5119 44 1 8.2326 -2.1675 -3.4268 45 1 8.9969 -2.9985 -2.0295 46 1 7.1033 -4.7586 -3.2100 47 1 5.3718 -4.7991 -5.4929 48 1 4.5776 -3.1978 -5.6588 49 1 3.5077 -5.0634 -3.9922 50 1 3.5678 -3.3450 -3.4807 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897824258.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:57 Heat of formation + Delta-G solvation = -152.000565 kcal Electronic energy + Delta-G solvation = -30728.258192 eV Core-core repulsion = 26528.297511 eV Total energy + Delta-G solvation = -4199.960681 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.82328 -39.43748 -38.77326 -35.57470 -35.25005 -33.57779 -32.89954 -32.34099 -31.93736 -30.82363 -28.75670 -27.45080 -25.64763 -25.03837 -23.61962 -23.19113 -21.96388 -21.68474 -20.46782 -19.70627 -18.17810 -17.60249 -17.25547 -17.15593 -16.45452 -16.26361 -15.78118 -15.56414 -15.41615 -14.84165 -14.69049 -14.37630 -14.09813 -14.02089 -13.72891 -13.59694 -13.34993 -13.03106 -12.92496 -12.62195 -12.42302 -12.15360 -11.95538 -11.87805 -11.61843 -11.55168 -11.53781 -11.22007 -11.03807 -11.00699 -10.84623 -10.71593 -10.62120 -10.50223 -10.49569 -10.13045 -9.99361 -9.53062 -9.39717 -8.88986 -8.77125 -8.34934 -7.59396 -5.96679 -3.99396 2.74119 3.10878 3.35936 3.41481 3.44255 3.55372 3.58673 3.65589 4.10492 4.28427 4.33205 4.51261 4.54928 4.62152 4.68684 4.82645 4.92980 5.02376 5.09556 5.11907 5.18166 5.25083 5.33689 5.38497 5.42002 5.44508 5.48816 5.57324 5.60461 5.61978 5.67024 5.69185 5.79072 5.84962 5.97621 6.02183 6.13339 6.35663 6.36347 6.49248 6.75182 7.01286 7.05781 7.11393 7.22889 7.51095 7.65783 8.00649 8.32924 8.50822 8.99994 9.20062 9.64822 11.11762 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.013101 B = 0.002867 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.657581 B = 9763.427506 C =10436.456729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.154 4.154 3 C 0.141 3.859 4 N -0.597 5.597 5 C 0.246 3.754 6 C -0.515 4.515 7 H 0.057 0.943 8 C 0.059 3.941 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.505 3.495 15 O -0.544 6.544 16 C -0.135 4.135 17 C -0.111 4.111 18 C 0.081 3.919 19 H 0.079 0.921 20 C -0.149 4.149 21 C -0.147 4.147 22 C 0.067 3.933 23 H 0.087 0.913 24 C 0.237 3.763 25 O -0.368 6.368 26 C 0.018 3.982 27 C 0.025 3.975 28 O -0.378 6.378 29 O -0.356 6.356 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.043 0.957 36 H 0.029 0.971 37 H 0.261 0.739 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.093 0.907 47 H 0.073 0.927 48 H 0.108 0.892 49 H 0.097 0.903 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.920 -10.345 -23.254 26.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.173 4.173 3 C 0.017 3.983 4 N -0.328 5.328 5 C 0.127 3.873 6 C -0.554 4.554 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.199 1.199 14 C 0.292 3.708 15 O -0.422 6.422 16 C -0.175 4.175 17 C -0.149 4.149 18 C 0.024 3.976 19 H 0.097 0.903 20 C -0.186 4.186 21 C -0.185 4.185 22 C 0.009 3.991 23 H 0.105 0.895 24 C 0.141 3.859 25 O -0.288 6.288 26 C -0.059 4.059 27 C -0.051 4.051 28 O -0.299 6.299 29 O -0.275 6.275 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.121 0.879 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.047 0.953 37 H 0.071 0.929 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.104 0.896 45 H 0.100 0.900 46 H 0.110 0.890 47 H 0.091 0.909 48 H 0.126 0.874 49 H 0.115 0.885 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.148 -10.138 -22.483 26.305 hybrid contribution -0.508 -0.871 0.671 1.211 sum 8.640 -11.010 -21.812 25.916 Atomic orbital electron populations 1.23647 0.95819 1.01300 1.01370 1.23228 0.96251 0.98761 0.99066 1.20543 0.92658 0.95635 0.89425 1.48262 1.10357 1.61032 1.13164 1.19271 0.95698 0.94189 0.78135 1.21425 1.39026 0.95227 0.99694 0.92431 1.24921 0.96163 0.95614 0.97527 1.69940 1.47229 1.19071 1.17544 0.86543 0.78765 0.82211 0.80196 1.20656 1.21235 1.19947 1.20460 0.82191 0.78363 0.89810 1.90650 1.53326 1.55944 1.42313 1.21647 0.97913 1.01744 0.96218 1.21716 0.95577 1.01608 0.96000 1.22820 0.90291 0.87485 0.97023 0.90312 1.23153 0.96631 0.97442 1.01419 1.23209 0.96621 0.96874 1.01775 1.23522 0.89142 0.89137 0.97301 0.89529 1.24244 0.87832 0.90270 0.83535 1.89196 1.50260 1.57669 1.31683 1.24338 0.86309 0.98887 0.96342 1.24178 0.92853 1.02165 0.85941 1.88897 1.19801 1.74562 1.46621 1.88541 1.31524 1.15563 1.91892 0.89102 0.88726 0.87906 0.90954 0.90416 0.93941 0.95267 0.92889 0.88965 0.90044 0.90392 0.90755 0.89902 0.90032 0.89581 0.89951 0.88958 0.90916 0.87358 0.88476 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.87 14.32 29.01 0.42 -2.46 16 2 C -0.15 -2.59 9.74 -36.03 -0.35 -2.94 16 3 C 0.14 2.40 5.69 -5.20 -0.03 2.37 16 4 N -0.60 -13.03 2.44 -176.44 -0.43 -13.46 16 5 C 0.25 6.61 5.20 -5.20 -0.03 6.59 16 6 C -0.51 -14.97 9.39 -34.44 -0.32 -15.29 16 7 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 10 Si 0.89 22.61 29.54 -169.99 -5.02 17.58 16 11 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.50 10.82 7.67 -10.98 -0.08 10.73 16 15 O -0.54 -14.02 15.56 5.56 0.09 -13.93 16 16 C -0.14 -2.13 4.16 -27.88 -0.12 -2.24 16 17 C -0.11 -1.61 4.07 -26.73 -0.11 -1.71 16 18 C 0.08 0.96 3.51 -26.01 -0.09 0.86 16 19 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 20 C -0.15 -1.40 6.54 -24.79 -0.16 -1.56 16 21 C -0.15 -1.27 6.52 -24.48 -0.16 -1.42 16 22 C 0.07 0.73 3.53 -25.70 -0.09 0.64 16 23 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 24 C 0.24 2.41 3.86 37.16 0.14 2.55 16 25 O -0.37 -3.75 10.43 -64.01 -0.67 -4.42 16 26 C 0.02 0.13 7.95 38.17 0.30 0.43 16 27 C 0.02 0.21 8.07 38.17 0.31 0.52 16 28 O -0.38 -4.42 11.19 -61.77 -0.69 -5.11 16 29 O -0.36 -4.72 10.15 -52.85 -0.54 -5.26 16 30 H 0.09 1.30 8.06 -52.48 -0.42 0.88 16 31 H 0.09 1.41 7.84 -52.49 -0.41 0.99 16 32 H 0.10 1.76 7.83 -52.49 -0.41 1.35 16 33 H 0.07 0.99 6.44 -51.93 -0.33 0.66 16 34 H 0.08 1.28 7.54 -51.93 -0.39 0.89 16 35 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 36 H 0.03 0.79 7.89 -51.93 -0.41 0.38 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.09 1.45 7.52 -51.92 -0.39 1.06 16 39 H 0.08 1.08 7.40 -51.93 -0.38 0.70 16 40 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 41 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.78 7.85 -51.93 -0.41 0.37 16 44 H 0.09 0.75 7.46 -51.92 -0.39 0.36 16 45 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 408.48 15.07 6.16 6.16 Total: -1.00 -35.88 408.48 -9.37 -45.24 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -8.53 Total: 1.09 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -0.47 Total: -1.30 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.31 Total: -40.05 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -1.81 Total: -28.72 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.88 -9.37 -45.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897824258.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.759 kcal (2) G-P(sol) polarization free energy of solvation -35.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds