Wall clock time and date at job start Tue Mar 31 2020 23:35:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31004 * 1
3 3 C 1.50700 * 119.99903 * 2 1
4 4 N 1.46495 * 109.47260 * 124.99791 * 3 2 1
5 5 C 1.46500 * 119.99979 * 270.00170 * 4 3 2
6 6 C 1.50695 * 109.47171 * 89.99884 * 5 4 3
7 7 H 1.08003 * 120.00390 * 0.02562 * 6 5 4
8 8 C 1.37876 * 120.00219 * 179.97438 * 6 5 4
9 9 N 1.31524 * 119.99698 * 0.02562 * 8 6 5
10 10 Si 1.86798 * 120.00443 * 180.02562 * 8 6 5
11 11 H 1.48497 * 109.46961 * 90.00187 * 10 8 6
12 12 H 1.48497 * 109.47128 * 210.00522 * 10 8 6
13 13 H 1.48502 * 109.47050 * 330.00374 * 10 8 6
14 14 C 1.34780 * 119.99958 * 90.00186 * 4 3 2
15 15 O 1.21278 * 120.00078 * 179.97438 * 14 4 3
16 16 C 1.50702 * 119.99806 * 359.97438 * 14 4 3
17 17 C 1.53004 * 109.46983 * 180.02562 * 16 14 4
18 18 C 1.53000 * 109.46852 * 180.02562 * 17 16 14
19 19 H 1.08997 * 109.82380 * 54.29373 * 18 17 16
20 20 C 1.54382 * 109.82873 * 175.18378 * 18 17 16
21 21 C 1.55304 * 102.25320 * 140.86492 * 20 18 17
22 22 C 1.54947 * 100.94206 * 325.86958 * 21 20 18
23 23 H 1.08997 * 110.30973 * 277.52365 * 22 21 20
24 24 C 1.53008 * 110.30965 * 155.45850 * 22 21 20
25 25 O 1.43754 * 109.62844 * 298.90486 * 24 22 21
26 26 C 1.44585 * 104.91740 * 215.71039 * 25 24 22
27 27 C 1.54914 * 101.63584 * 36.26640 * 26 25 24
28 28 O 1.43357 * 109.63215 * 179.69044 * 24 22 21
29 29 O 1.43242 * 109.82649 * 293.40779 * 18 17 16
30 30 H 1.08005 * 119.99846 * 180.02562 * 1 2 3
31 31 H 1.07995 * 120.00080 * 359.72973 * 1 2 3
32 32 H 1.07999 * 120.00108 * 180.02562 * 2 1 3
33 33 H 1.08999 * 109.47249 * 245.00440 * 3 2 1
34 34 H 1.09006 * 109.47239 * 4.99581 * 3 2 1
35 35 H 1.08998 * 109.46608 * 209.99924 * 5 4 3
36 36 H 1.09004 * 109.47086 * 329.99582 * 5 4 3
37 37 H 0.96999 * 119.99458 * 179.97438 * 9 8 6
38 38 H 1.09010 * 109.46984 * 300.00073 * 16 14 4
39 39 H 1.09000 * 109.47408 * 60.00178 * 16 14 4
40 40 H 1.08997 * 109.46927 * 299.99881 * 17 16 14
41 41 H 1.09000 * 109.47195 * 59.99691 * 17 16 14
42 42 H 1.08998 * 110.84932 * 259.06137 * 20 18 17
43 43 H 1.09002 * 110.84658 * 22.67720 * 20 18 17
44 44 H 1.09007 * 111.12451 * 83.78845 * 21 20 18
45 45 H 1.08999 * 111.13107 * 207.90565 * 21 20 18
46 46 H 1.09000 * 109.62516 * 59.29571 * 24 22 21
47 47 H 1.09002 * 111.08843 * 278.15792 * 26 25 24
48 48 H 1.08997 * 110.98102 * 154.32901 * 26 25 24
49 49 H 1.08999 * 110.69471 * 205.95900 * 27 26 25
50 50 H 1.09004 * 110.69432 * 82.75788 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 7 2.9937 1.3320 1.1314
5 6 2.5588 1.8650 2.4248
6 6 1.9751 0.7519 3.2562
7 1 1.9328 -0.2523 2.8610
8 6 1.4961 1.0152 4.5220
9 7 1.5480 2.2380 5.0036
10 14 0.7733 -0.3647 5.5530
11 1 1.8485 -0.9946 6.3606
12 1 -0.2673 0.1863 6.4578
13 1 0.1640 -1.3828 4.6600
14 6 4.2497 0.8663 0.9824
15 8 5.0200 0.8890 1.9189
16 6 4.6969 0.3175 -0.3480
17 6 6.1531 -0.1411 -0.2470
18 6 6.6073 -0.6977 -1.5978
19 1 6.4306 0.0405 -2.3801
20 6 8.1091 -1.0509 -1.5405
21 6 8.1689 -2.3702 -2.3577
22 6 6.8045 -3.0059 -1.9901
23 1 6.8741 -3.5247 -1.0341
24 6 6.3568 -3.9739 -3.0872
25 8 6.1977 -3.2606 -4.3251
26 6 5.0691 -3.8893 -4.9745
27 6 4.1563 -4.2169 -3.7665
28 8 5.0978 -4.5586 -2.7293
29 8 5.8888 -1.9010 -1.8939
30 1 -0.5400 -0.9354 0.0004
31 1 -0.5400 0.9352 0.0044
32 1 1.8501 -0.9353 -0.0004
33 1 2.6213 1.4027 -0.9314
34 1 1.3586 2.1317 0.0895
35 1 3.4131 2.2977 2.9452
36 1 1.8029 2.6341 2.2652
37 1 1.2107 2.4232 5.8940
38 1 4.0677 -0.5296 -0.6216
39 1 4.6120 1.0937 -1.1084
40 1 6.7825 0.7057 0.0268
41 1 6.2377 -0.9175 0.5134
42 1 8.7088 -0.2736 -2.0141
43 1 8.4296 -1.2168 -0.5119
44 1 8.2326 -2.1675 -3.4268
45 1 8.9969 -2.9985 -2.0295
46 1 7.1033 -4.7586 -3.2100
47 1 5.3718 -4.7991 -5.4929
48 1 4.5776 -3.1978 -5.6588
49 1 3.5077 -5.0634 -3.9922
50 1 3.5678 -3.3450 -3.4807
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000897824258.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:35:57
Heat of formation + Delta-G solvation = -152.000565 kcal
Electronic energy + Delta-G solvation = -30728.258192 eV
Core-core repulsion = 26528.297511 eV
Total energy + Delta-G solvation = -4199.960681 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.192 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-40.82328 -39.43748 -38.77326 -35.57470 -35.25005 -33.57779 -32.89954 -32.34099
-31.93736 -30.82363 -28.75670 -27.45080 -25.64763 -25.03837 -23.61962 -23.19113
-21.96388 -21.68474 -20.46782 -19.70627 -18.17810 -17.60249 -17.25547 -17.15593
-16.45452 -16.26361 -15.78118 -15.56414 -15.41615 -14.84165 -14.69049 -14.37630
-14.09813 -14.02089 -13.72891 -13.59694 -13.34993 -13.03106 -12.92496 -12.62195
-12.42302 -12.15360 -11.95538 -11.87805 -11.61843 -11.55168 -11.53781 -11.22007
-11.03807 -11.00699 -10.84623 -10.71593 -10.62120 -10.50223 -10.49569 -10.13045
-9.99361 -9.53062 -9.39717 -8.88986 -8.77125 -8.34934 -7.59396 -5.96679
-3.99396 2.74119 3.10878 3.35936 3.41481 3.44255 3.55372 3.58673
3.65589 4.10492 4.28427 4.33205 4.51261 4.54928 4.62152 4.68684
4.82645 4.92980 5.02376 5.09556 5.11907 5.18166 5.25083 5.33689
5.38497 5.42002 5.44508 5.48816 5.57324 5.60461 5.61978 5.67024
5.69185 5.79072 5.84962 5.97621 6.02183 6.13339 6.35663 6.36347
6.49248 6.75182 7.01286 7.05781 7.11393 7.22889 7.51095 7.65783
8.00649 8.32924 8.50822 8.99994 9.20062 9.64822 11.11762
Molecular weight = 339.19amu
Principal moments of inertia in cm(-1)
A = 0.013101 B = 0.002867 C = 0.002682
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2136.657581 B = 9763.427506 C =10436.456729
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C -0.154 4.154
3 C 0.141 3.859
4 N -0.597 5.597
5 C 0.246 3.754
6 C -0.515 4.515
7 H 0.057 0.943
8 C 0.059 3.941
9 N -0.898 5.898
10 Si 0.895 3.105
11 H -0.280 1.280
12 H -0.286 1.286
13 H -0.275 1.275
14 C 0.505 3.495
15 O -0.544 6.544
16 C -0.135 4.135
17 C -0.111 4.111
18 C 0.081 3.919
19 H 0.079 0.921
20 C -0.149 4.149
21 C -0.147 4.147
22 C 0.067 3.933
23 H 0.087 0.913
24 C 0.237 3.763
25 O -0.368 6.368
26 C 0.018 3.982
27 C 0.025 3.975
28 O -0.378 6.378
29 O -0.356 6.356
30 H 0.091 0.909
31 H 0.094 0.906
32 H 0.103 0.897
33 H 0.072 0.928
34 H 0.077 0.923
35 H 0.043 0.957
36 H 0.029 0.971
37 H 0.261 0.739
38 H 0.092 0.908
39 H 0.081 0.919
40 H 0.078 0.922
41 H 0.074 0.926
42 H 0.082 0.918
43 H 0.081 0.919
44 H 0.086 0.914
45 H 0.082 0.918
46 H 0.093 0.907
47 H 0.073 0.927
48 H 0.108 0.892
49 H 0.097 0.903
50 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.920 -10.345 -23.254 26.969
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C -0.173 4.173
3 C 0.017 3.983
4 N -0.328 5.328
5 C 0.127 3.873
6 C -0.554 4.554
7 H 0.076 0.924
8 C -0.142 4.142
9 N -0.538 5.538
10 Si 0.723 3.277
11 H -0.207 1.207
12 H -0.212 1.212
13 H -0.199 1.199
14 C 0.292 3.708
15 O -0.422 6.422
16 C -0.175 4.175
17 C -0.149 4.149
18 C 0.024 3.976
19 H 0.097 0.903
20 C -0.186 4.186
21 C -0.185 4.185
22 C 0.009 3.991
23 H 0.105 0.895
24 C 0.141 3.859
25 O -0.288 6.288
26 C -0.059 4.059
27 C -0.051 4.051
28 O -0.299 6.299
29 O -0.275 6.275
30 H 0.109 0.891
31 H 0.113 0.887
32 H 0.121 0.879
33 H 0.090 0.910
34 H 0.096 0.904
35 H 0.061 0.939
36 H 0.047 0.953
37 H 0.071 0.929
38 H 0.110 0.890
39 H 0.100 0.900
40 H 0.096 0.904
41 H 0.092 0.908
42 H 0.101 0.899
43 H 0.100 0.900
44 H 0.104 0.896
45 H 0.100 0.900
46 H 0.110 0.890
47 H 0.091 0.909
48 H 0.126 0.874
49 H 0.115 0.885
50 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges 9.148 -10.138 -22.483 26.305
hybrid contribution -0.508 -0.871 0.671 1.211
sum 8.640 -11.010 -21.812 25.916
Atomic orbital electron populations
1.23647 0.95819 1.01300 1.01370 1.23228 0.96251 0.98761 0.99066
1.20543 0.92658 0.95635 0.89425 1.48262 1.10357 1.61032 1.13164
1.19271 0.95698 0.94189 0.78135 1.21425 1.39026 0.95227 0.99694
0.92431 1.24921 0.96163 0.95614 0.97527 1.69940 1.47229 1.19071
1.17544 0.86543 0.78765 0.82211 0.80196 1.20656 1.21235 1.19947
1.20460 0.82191 0.78363 0.89810 1.90650 1.53326 1.55944 1.42313
1.21647 0.97913 1.01744 0.96218 1.21716 0.95577 1.01608 0.96000
1.22820 0.90291 0.87485 0.97023 0.90312 1.23153 0.96631 0.97442
1.01419 1.23209 0.96621 0.96874 1.01775 1.23522 0.89142 0.89137
0.97301 0.89529 1.24244 0.87832 0.90270 0.83535 1.89196 1.50260
1.57669 1.31683 1.24338 0.86309 0.98887 0.96342 1.24178 0.92853
1.02165 0.85941 1.88897 1.19801 1.74562 1.46621 1.88541 1.31524
1.15563 1.91892 0.89102 0.88726 0.87906 0.90954 0.90416 0.93941
0.95267 0.92889 0.88965 0.90044 0.90392 0.90755 0.89902 0.90032
0.89581 0.89951 0.88958 0.90916 0.87358 0.88476 0.90022
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.87 14.32 29.01 0.42 -2.46 16
2 C -0.15 -2.59 9.74 -36.03 -0.35 -2.94 16
3 C 0.14 2.40 5.69 -5.20 -0.03 2.37 16
4 N -0.60 -13.03 2.44 -176.44 -0.43 -13.46 16
5 C 0.25 6.61 5.20 -5.20 -0.03 6.59 16
6 C -0.51 -14.97 9.39 -34.44 -0.32 -15.29 16
7 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16
8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16
9 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16
10 Si 0.89 22.61 29.54 -169.99 -5.02 17.58 16
11 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16
12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
13 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16
14 C 0.50 10.82 7.67 -10.98 -0.08 10.73 16
15 O -0.54 -14.02 15.56 5.56 0.09 -13.93 16
16 C -0.14 -2.13 4.16 -27.88 -0.12 -2.24 16
17 C -0.11 -1.61 4.07 -26.73 -0.11 -1.71 16
18 C 0.08 0.96 3.51 -26.01 -0.09 0.86 16
19 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16
20 C -0.15 -1.40 6.54 -24.79 -0.16 -1.56 16
21 C -0.15 -1.27 6.52 -24.48 -0.16 -1.42 16
22 C 0.07 0.73 3.53 -25.70 -0.09 0.64 16
23 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16
24 C 0.24 2.41 3.86 37.16 0.14 2.55 16
25 O -0.37 -3.75 10.43 -64.01 -0.67 -4.42 16
26 C 0.02 0.13 7.95 38.17 0.30 0.43 16
27 C 0.02 0.21 8.07 38.17 0.31 0.52 16
28 O -0.38 -4.42 11.19 -61.77 -0.69 -5.11 16
29 O -0.36 -4.72 10.15 -52.85 -0.54 -5.26 16
30 H 0.09 1.30 8.06 -52.48 -0.42 0.88 16
31 H 0.09 1.41 7.84 -52.49 -0.41 0.99 16
32 H 0.10 1.76 7.83 -52.49 -0.41 1.35 16
33 H 0.07 0.99 6.44 -51.93 -0.33 0.66 16
34 H 0.08 1.28 7.54 -51.93 -0.39 0.89 16
35 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16
36 H 0.03 0.79 7.89 -51.93 -0.41 0.38 16
37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16
38 H 0.09 1.45 7.52 -51.92 -0.39 1.06 16
39 H 0.08 1.08 7.40 -51.93 -0.38 0.70 16
40 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16
41 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16
42 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16
43 H 0.08 0.78 7.85 -51.93 -0.41 0.37 16
44 H 0.09 0.75 7.46 -51.92 -0.39 0.36 16
45 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16
46 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16
47 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16
48 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16
49 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16
50 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16
LS Contribution 408.48 15.07 6.16 6.16
Total: -1.00 -35.88 408.48 -9.37 -45.24
By element:
Atomic # 1 Polarization: 9.62 SS G_CDS: -8.53 Total: 1.09 kcal
Atomic # 6 Polarization: -0.83 SS G_CDS: -0.47 Total: -1.30 kcal
Atomic # 7 Polarization: -40.36 SS G_CDS: 0.31 Total: -40.05 kcal
Atomic # 8 Polarization: -26.92 SS G_CDS: -1.81 Total: -28.72 kcal
Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal
Total LS contribution 6.16 Total: 6.16 kcal
Total: -35.88 -9.37 -45.24 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000897824258.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -106.759 kcal
(2) G-P(sol) polarization free energy of solvation -35.875 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.634 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.242 kcal
(6) G-S(sol) free energy of system = (1) + (5) -152.001 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds