Wall clock time and date at job start Tue Mar 31 2020 23:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 N 1.46495 * 109.47260 * 124.99791 * 3 2 1 5 5 C 1.46500 * 119.99979 * 270.00170 * 4 3 2 6 6 C 1.50695 * 109.47171 * 89.99884 * 5 4 3 7 7 H 1.08003 * 120.00390 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00219 * 179.97438 * 6 5 4 9 9 N 1.31524 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00443 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46961 * 90.00187 * 10 8 6 12 12 H 1.48497 * 109.47128 * 210.00522 * 10 8 6 13 13 H 1.48502 * 109.47050 * 330.00374 * 10 8 6 14 14 C 1.34780 * 119.99958 * 90.00186 * 4 3 2 15 15 O 1.21278 * 120.00078 * 179.97438 * 14 4 3 16 16 C 1.50702 * 119.99806 * 359.97438 * 14 4 3 17 17 C 1.53004 * 109.46983 * 180.02562 * 16 14 4 18 18 C 1.53000 * 109.46852 * 180.02562 * 17 16 14 19 19 H 1.08997 * 109.82380 * 54.29373 * 18 17 16 20 20 C 1.54382 * 109.82873 * 175.18378 * 18 17 16 21 21 C 1.55304 * 102.25320 * 140.86492 * 20 18 17 22 22 C 1.54947 * 100.94206 * 325.86958 * 21 20 18 23 23 H 1.08997 * 110.30973 * 277.52365 * 22 21 20 24 24 C 1.53008 * 110.30965 * 155.45850 * 22 21 20 25 25 O 1.43754 * 109.62844 * 298.90486 * 24 22 21 26 26 C 1.44585 * 104.91740 * 215.71039 * 25 24 22 27 27 C 1.54914 * 101.63584 * 36.26640 * 26 25 24 28 28 O 1.43357 * 109.63215 * 179.69044 * 24 22 21 29 29 O 1.43242 * 109.82649 * 293.40779 * 18 17 16 30 30 H 1.08005 * 119.99846 * 180.02562 * 1 2 3 31 31 H 1.07995 * 120.00080 * 359.72973 * 1 2 3 32 32 H 1.07999 * 120.00108 * 180.02562 * 2 1 3 33 33 H 1.08999 * 109.47249 * 245.00440 * 3 2 1 34 34 H 1.09006 * 109.47239 * 4.99581 * 3 2 1 35 35 H 1.08998 * 109.46608 * 209.99924 * 5 4 3 36 36 H 1.09004 * 109.47086 * 329.99582 * 5 4 3 37 37 H 0.96999 * 119.99458 * 179.97438 * 9 8 6 38 38 H 1.09010 * 109.46984 * 300.00073 * 16 14 4 39 39 H 1.09000 * 109.47408 * 60.00178 * 16 14 4 40 40 H 1.08997 * 109.46927 * 299.99881 * 17 16 14 41 41 H 1.09000 * 109.47195 * 59.99691 * 17 16 14 42 42 H 1.08998 * 110.84932 * 259.06137 * 20 18 17 43 43 H 1.09002 * 110.84658 * 22.67720 * 20 18 17 44 44 H 1.09007 * 111.12451 * 83.78845 * 21 20 18 45 45 H 1.08999 * 111.13107 * 207.90565 * 21 20 18 46 46 H 1.09000 * 109.62516 * 59.29571 * 24 22 21 47 47 H 1.09002 * 111.08843 * 278.15792 * 26 25 24 48 48 H 1.08997 * 110.98102 * 154.32901 * 26 25 24 49 49 H 1.08999 * 110.69471 * 205.95900 * 27 26 25 50 50 H 1.09004 * 110.69432 * 82.75788 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5588 1.8650 2.4248 6 6 1.9751 0.7519 3.2562 7 1 1.9328 -0.2523 2.8610 8 6 1.4961 1.0152 4.5220 9 7 1.5480 2.2380 5.0036 10 14 0.7733 -0.3647 5.5530 11 1 1.8485 -0.9946 6.3606 12 1 -0.2673 0.1863 6.4578 13 1 0.1640 -1.3828 4.6600 14 6 4.2497 0.8663 0.9824 15 8 5.0200 0.8890 1.9189 16 6 4.6969 0.3175 -0.3480 17 6 6.1531 -0.1411 -0.2470 18 6 6.6073 -0.6977 -1.5978 19 1 6.4306 0.0405 -2.3801 20 6 8.1091 -1.0509 -1.5405 21 6 8.1689 -2.3702 -2.3577 22 6 6.8045 -3.0059 -1.9901 23 1 6.8741 -3.5247 -1.0341 24 6 6.3568 -3.9739 -3.0872 25 8 6.1977 -3.2606 -4.3251 26 6 5.0691 -3.8893 -4.9745 27 6 4.1563 -4.2169 -3.7665 28 8 5.0978 -4.5586 -2.7293 29 8 5.8888 -1.9010 -1.8939 30 1 -0.5400 -0.9354 0.0004 31 1 -0.5400 0.9352 0.0044 32 1 1.8501 -0.9353 -0.0004 33 1 2.6213 1.4027 -0.9314 34 1 1.3586 2.1317 0.0895 35 1 3.4131 2.2977 2.9452 36 1 1.8029 2.6341 2.2652 37 1 1.2107 2.4232 5.8940 38 1 4.0677 -0.5296 -0.6216 39 1 4.6120 1.0937 -1.1084 40 1 6.7825 0.7057 0.0268 41 1 6.2377 -0.9175 0.5134 42 1 8.7088 -0.2736 -2.0141 43 1 8.4296 -1.2168 -0.5119 44 1 8.2326 -2.1675 -3.4268 45 1 8.9969 -2.9985 -2.0295 46 1 7.1033 -4.7586 -3.2100 47 1 5.3718 -4.7991 -5.4929 48 1 4.5776 -3.1978 -5.6588 49 1 3.5077 -5.0634 -3.9922 50 1 3.5678 -3.3450 -3.4807 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897824258.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:56 Heat of formation + Delta-G solvation = -175.145581 kcal Electronic energy + Delta-G solvation = -30729.261836 eV Core-core repulsion = 26528.297511 eV Total energy + Delta-G solvation = -4200.964325 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.56450 -40.81791 -39.93438 -37.24018 -35.97726 -35.17387 -34.50145 -33.63878 -33.14999 -31.69501 -30.04224 -28.97388 -26.93029 -26.47966 -24.83250 -24.11809 -23.31249 -22.47907 -21.46778 -21.06217 -19.77551 -18.64532 -18.33564 -18.06138 -17.88375 -17.78256 -17.21350 -16.72556 -16.44479 -16.26418 -15.99011 -15.65276 -15.49379 -14.90743 -14.81226 -14.48708 -14.36159 -14.21518 -14.19031 -14.03108 -13.69491 -13.50858 -13.33510 -13.00867 -12.91273 -12.89107 -12.73261 -12.63974 -12.59170 -12.25650 -12.23071 -12.20450 -11.90342 -11.77312 -11.71375 -11.61705 -11.12570 -10.79514 -10.65101 -10.56204 -10.26384 -10.20107 -9.45378 -8.21463 -6.33727 1.33368 1.36171 1.40421 1.46526 1.87747 2.34539 2.47111 2.53126 2.77400 2.95946 3.08093 3.56671 3.64502 3.71492 3.86142 3.88712 4.04809 4.08229 4.12416 4.17905 4.22749 4.28540 4.31083 4.37144 4.38981 4.45711 4.51885 4.64323 4.65825 4.73738 4.82513 4.85411 4.88710 4.90343 4.96935 5.02001 5.02745 5.09552 5.14759 5.23783 5.25318 5.38100 5.56772 5.75997 5.79853 6.00962 6.07787 6.09693 6.13940 6.71389 6.80146 7.30103 7.50045 8.86026 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.013101 B = 0.002867 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.657581 B = 9763.427506 C =10436.456729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.173 4.173 3 C 0.138 3.862 4 N -0.601 5.601 5 C 0.261 3.739 6 C -0.528 4.528 7 H 0.049 0.951 8 C 0.007 3.993 9 N -0.930 5.930 10 Si 0.961 3.039 11 H -0.282 1.282 12 H -0.273 1.273 13 H -0.264 1.264 14 C 0.495 3.505 15 O -0.598 6.598 16 C -0.118 4.118 17 C -0.106 4.106 18 C 0.085 3.915 19 H 0.094 0.906 20 C -0.147 4.147 21 C -0.134 4.134 22 C 0.056 3.944 23 H 0.075 0.925 24 C 0.235 3.765 25 O -0.383 6.383 26 C 0.019 3.981 27 C 0.017 3.983 28 O -0.406 6.406 29 O -0.378 6.378 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.082 0.918 35 H -0.003 1.003 36 H 0.022 0.978 37 H 0.266 0.734 38 H 0.097 0.903 39 H 0.116 0.884 40 H 0.075 0.925 41 H 0.044 0.956 42 H 0.103 0.897 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.102 0.898 46 H 0.114 0.886 47 H 0.093 0.907 48 H 0.125 0.875 49 H 0.118 0.882 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.687 -11.660 -25.688 29.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.192 4.192 3 C 0.016 3.984 4 N -0.331 5.331 5 C 0.140 3.860 6 C -0.567 4.567 7 H 0.068 0.932 8 C -0.191 4.191 9 N -0.570 5.570 10 Si 0.786 3.214 11 H -0.208 1.208 12 H -0.198 1.198 13 H -0.189 1.189 14 C 0.284 3.716 15 O -0.480 6.480 16 C -0.158 4.158 17 C -0.144 4.144 18 C 0.027 3.973 19 H 0.112 0.888 20 C -0.184 4.184 21 C -0.172 4.172 22 C -0.002 4.002 23 H 0.093 0.907 24 C 0.140 3.860 25 O -0.304 6.304 26 C -0.057 4.057 27 C -0.058 4.058 28 O -0.328 6.328 29 O -0.298 6.298 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.115 0.885 33 H 0.129 0.871 34 H 0.100 0.900 35 H 0.015 0.985 36 H 0.040 0.960 37 H 0.075 0.925 38 H 0.115 0.885 39 H 0.135 0.865 40 H 0.093 0.907 41 H 0.063 0.937 42 H 0.121 0.879 43 H 0.093 0.907 44 H 0.109 0.891 45 H 0.121 0.879 46 H 0.131 0.869 47 H 0.112 0.888 48 H 0.143 0.857 49 H 0.136 0.864 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.890 -11.461 -24.972 28.879 hybrid contribution -0.487 -0.444 1.416 1.561 sum 8.403 -11.904 -23.557 27.699 Atomic orbital electron populations 1.23884 0.95527 1.02450 0.99256 1.23184 0.96755 0.98326 1.00969 1.20837 0.92506 0.96066 0.89004 1.48274 1.11554 1.60582 1.12733 1.18740 0.93347 0.93585 0.80329 1.21625 1.39295 0.95232 1.00501 0.93225 1.25797 0.96493 0.98118 0.98740 1.70050 1.47866 1.20986 1.18100 0.85515 0.78116 0.79239 0.78576 1.20796 1.19785 1.18862 1.21512 0.81405 0.77280 0.91358 1.90615 1.54748 1.58018 1.44624 1.21611 0.98506 1.02452 0.93193 1.21679 0.94824 1.00702 0.97224 1.22813 0.91669 0.87493 0.95304 0.88787 1.23162 0.95133 0.98592 1.01560 1.23167 0.95874 0.96321 1.01823 1.23708 0.90232 0.88877 0.97417 0.90712 1.24363 0.87816 0.90455 0.83363 1.89163 1.51182 1.58357 1.31667 1.24533 0.85233 1.00130 0.95802 1.24349 0.92936 1.02552 0.86010 1.88870 1.20913 1.74856 1.48112 1.88511 1.32987 1.16442 1.91833 0.87660 0.87894 0.88487 0.87088 0.89994 0.98486 0.95998 0.92522 0.88492 0.86549 0.90674 0.93666 0.87865 0.90694 0.89113 0.87927 0.86874 0.88847 0.85686 0.86373 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.13 14.32 67.78 0.97 -4.15 16 2 C -0.17 -5.64 9.74 25.64 0.25 -5.39 16 3 C 0.14 4.53 5.69 85.63 0.49 5.02 16 4 N -0.60 -26.70 2.44 -830.51 -2.03 -28.72 16 5 C 0.26 14.59 5.20 85.63 0.45 15.04 16 6 C -0.53 -31.42 9.39 25.60 0.24 -31.18 16 7 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 8 C 0.01 0.41 5.46 84.65 0.46 0.87 16 9 N -0.93 -57.66 13.29 21.45 0.28 -57.37 16 10 Si 0.96 46.63 29.54 68.60 2.03 48.66 16 11 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 12 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 13 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 14 C 0.49 21.70 7.67 87.66 0.67 22.38 16 15 O -0.60 -32.38 15.56 -3.02 -0.05 -32.42 16 16 C -0.12 -3.63 4.16 29.85 0.12 -3.51 16 17 C -0.11 -3.08 4.07 30.60 0.12 -2.95 16 18 C 0.08 1.88 3.51 31.06 0.11 1.98 16 19 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 20 C -0.15 -2.51 6.54 31.85 0.21 -2.30 16 21 C -0.13 -2.03 6.52 32.05 0.21 -1.82 16 22 C 0.06 1.17 3.53 31.26 0.11 1.28 16 23 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 24 C 0.24 4.46 3.86 71.98 0.28 4.73 16 25 O -0.38 -7.02 10.43 -121.46 -1.27 -8.28 16 26 C 0.02 0.23 7.95 72.64 0.58 0.80 16 27 C 0.02 0.28 8.07 72.64 0.59 0.86 16 28 O -0.41 -9.19 11.19 -123.60 -1.38 -10.58 16 29 O -0.38 -9.72 10.15 -132.13 -1.34 -11.06 16 30 H 0.11 2.79 8.06 -2.91 -0.02 2.76 16 31 H 0.10 2.86 7.84 -2.91 -0.02 2.83 16 32 H 0.10 3.26 7.83 -2.91 -0.02 3.24 16 33 H 0.11 2.75 6.44 -2.39 -0.02 2.74 16 34 H 0.08 2.62 7.54 -2.38 -0.02 2.60 16 35 H 0.00 -0.19 7.42 -2.39 -0.02 -0.21 16 36 H 0.02 1.24 7.89 -2.38 -0.02 1.22 16 37 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 38 H 0.10 2.96 7.52 -2.38 -0.02 2.94 16 39 H 0.12 2.78 7.40 -2.39 -0.02 2.76 16 40 H 0.07 2.20 8.10 -2.39 -0.02 2.18 16 41 H 0.04 1.55 8.10 -2.39 -0.02 1.53 16 42 H 0.10 1.35 8.14 -2.39 -0.02 1.34 16 43 H 0.07 1.38 7.85 -2.39 -0.02 1.36 16 44 H 0.09 1.33 7.46 -2.38 -0.02 1.31 16 45 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 Total: -1.00 -80.94 408.48 3.01 -77.94 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.90 Total: 20.19 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 5.86 Total: 1.66 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -1.74 Total: -86.10 kcal Atomic # 8 Polarization: -58.31 SS G_CDS: -4.04 Total: -62.35 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -80.94 3.01 -77.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897824258.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.209 kcal (2) G-P(sol) polarization free energy of solvation -80.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds