Wall clock time and date at job start Tue Mar 31 2020 23:35:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31004 * 1
3 3 C 1.50700 * 119.99903 * 2 1
4 4 N 1.46495 * 109.47260 * 124.99791 * 3 2 1
5 5 C 1.46500 * 119.99979 * 270.00170 * 4 3 2
6 6 C 1.50695 * 109.47171 * 89.99884 * 5 4 3
7 7 H 1.08003 * 120.00390 * 0.02562 * 6 5 4
8 8 C 1.37876 * 120.00219 * 179.97438 * 6 5 4
9 9 N 1.31524 * 119.99698 * 0.02562 * 8 6 5
10 10 Si 1.86798 * 120.00443 * 180.02562 * 8 6 5
11 11 H 1.48497 * 109.46961 * 90.00187 * 10 8 6
12 12 H 1.48497 * 109.47128 * 210.00522 * 10 8 6
13 13 H 1.48502 * 109.47050 * 330.00374 * 10 8 6
14 14 C 1.34780 * 119.99958 * 90.00186 * 4 3 2
15 15 O 1.21278 * 120.00078 * 179.97438 * 14 4 3
16 16 C 1.50702 * 119.99806 * 359.97438 * 14 4 3
17 17 C 1.53004 * 109.46983 * 180.02562 * 16 14 4
18 18 C 1.53000 * 109.46852 * 180.02562 * 17 16 14
19 19 H 1.08997 * 109.82380 * 54.29373 * 18 17 16
20 20 C 1.54382 * 109.82873 * 175.18378 * 18 17 16
21 21 C 1.55304 * 102.25320 * 140.86492 * 20 18 17
22 22 C 1.54947 * 100.94206 * 325.86958 * 21 20 18
23 23 H 1.08997 * 110.30973 * 277.52365 * 22 21 20
24 24 C 1.53008 * 110.30965 * 155.45850 * 22 21 20
25 25 O 1.43754 * 109.62844 * 298.90486 * 24 22 21
26 26 C 1.44585 * 104.91740 * 215.71039 * 25 24 22
27 27 C 1.54914 * 101.63584 * 36.26640 * 26 25 24
28 28 O 1.43357 * 109.63215 * 179.69044 * 24 22 21
29 29 O 1.43242 * 109.82649 * 293.40779 * 18 17 16
30 30 H 1.08005 * 119.99846 * 180.02562 * 1 2 3
31 31 H 1.07995 * 120.00080 * 359.72973 * 1 2 3
32 32 H 1.07999 * 120.00108 * 180.02562 * 2 1 3
33 33 H 1.08999 * 109.47249 * 245.00440 * 3 2 1
34 34 H 1.09006 * 109.47239 * 4.99581 * 3 2 1
35 35 H 1.08998 * 109.46608 * 209.99924 * 5 4 3
36 36 H 1.09004 * 109.47086 * 329.99582 * 5 4 3
37 37 H 0.96999 * 119.99458 * 179.97438 * 9 8 6
38 38 H 1.09010 * 109.46984 * 300.00073 * 16 14 4
39 39 H 1.09000 * 109.47408 * 60.00178 * 16 14 4
40 40 H 1.08997 * 109.46927 * 299.99881 * 17 16 14
41 41 H 1.09000 * 109.47195 * 59.99691 * 17 16 14
42 42 H 1.08998 * 110.84932 * 259.06137 * 20 18 17
43 43 H 1.09002 * 110.84658 * 22.67720 * 20 18 17
44 44 H 1.09007 * 111.12451 * 83.78845 * 21 20 18
45 45 H 1.08999 * 111.13107 * 207.90565 * 21 20 18
46 46 H 1.09000 * 109.62516 * 59.29571 * 24 22 21
47 47 H 1.09002 * 111.08843 * 278.15792 * 26 25 24
48 48 H 1.08997 * 110.98102 * 154.32901 * 26 25 24
49 49 H 1.08999 * 110.69471 * 205.95900 * 27 26 25
50 50 H 1.09004 * 110.69432 * 82.75788 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 7 2.9937 1.3320 1.1314
5 6 2.5588 1.8650 2.4248
6 6 1.9751 0.7519 3.2562
7 1 1.9328 -0.2523 2.8610
8 6 1.4961 1.0152 4.5220
9 7 1.5480 2.2380 5.0036
10 14 0.7733 -0.3647 5.5530
11 1 1.8485 -0.9946 6.3606
12 1 -0.2673 0.1863 6.4578
13 1 0.1640 -1.3828 4.6600
14 6 4.2497 0.8663 0.9824
15 8 5.0200 0.8890 1.9189
16 6 4.6969 0.3175 -0.3480
17 6 6.1531 -0.1411 -0.2470
18 6 6.6073 -0.6977 -1.5978
19 1 6.4306 0.0405 -2.3801
20 6 8.1091 -1.0509 -1.5405
21 6 8.1689 -2.3702 -2.3577
22 6 6.8045 -3.0059 -1.9901
23 1 6.8741 -3.5247 -1.0341
24 6 6.3568 -3.9739 -3.0872
25 8 6.1977 -3.2606 -4.3251
26 6 5.0691 -3.8893 -4.9745
27 6 4.1563 -4.2169 -3.7665
28 8 5.0978 -4.5586 -2.7293
29 8 5.8888 -1.9010 -1.8939
30 1 -0.5400 -0.9354 0.0004
31 1 -0.5400 0.9352 0.0044
32 1 1.8501 -0.9353 -0.0004
33 1 2.6213 1.4027 -0.9314
34 1 1.3586 2.1317 0.0895
35 1 3.4131 2.2977 2.9452
36 1 1.8029 2.6341 2.2652
37 1 1.2107 2.4232 5.8940
38 1 4.0677 -0.5296 -0.6216
39 1 4.6120 1.0937 -1.1084
40 1 6.7825 0.7057 0.0268
41 1 6.2377 -0.9175 0.5134
42 1 8.7088 -0.2736 -2.0141
43 1 8.4296 -1.2168 -0.5119
44 1 8.2326 -2.1675 -3.4268
45 1 8.9969 -2.9985 -2.0295
46 1 7.1033 -4.7586 -3.2100
47 1 5.3718 -4.7991 -5.4929
48 1 4.5776 -3.1978 -5.6588
49 1 3.5077 -5.0634 -3.9922
50 1 3.5678 -3.3450 -3.4807
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000897824258.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:35:56
Heat of formation + Delta-G solvation = -175.145581 kcal
Electronic energy + Delta-G solvation = -30729.261836 eV
Core-core repulsion = 26528.297511 eV
Total energy + Delta-G solvation = -4200.964325 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.192 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-41.56450 -40.81791 -39.93438 -37.24018 -35.97726 -35.17387 -34.50145 -33.63878
-33.14999 -31.69501 -30.04224 -28.97388 -26.93029 -26.47966 -24.83250 -24.11809
-23.31249 -22.47907 -21.46778 -21.06217 -19.77551 -18.64532 -18.33564 -18.06138
-17.88375 -17.78256 -17.21350 -16.72556 -16.44479 -16.26418 -15.99011 -15.65276
-15.49379 -14.90743 -14.81226 -14.48708 -14.36159 -14.21518 -14.19031 -14.03108
-13.69491 -13.50858 -13.33510 -13.00867 -12.91273 -12.89107 -12.73261 -12.63974
-12.59170 -12.25650 -12.23071 -12.20450 -11.90342 -11.77312 -11.71375 -11.61705
-11.12570 -10.79514 -10.65101 -10.56204 -10.26384 -10.20107 -9.45378 -8.21463
-6.33727 1.33368 1.36171 1.40421 1.46526 1.87747 2.34539 2.47111
2.53126 2.77400 2.95946 3.08093 3.56671 3.64502 3.71492 3.86142
3.88712 4.04809 4.08229 4.12416 4.17905 4.22749 4.28540 4.31083
4.37144 4.38981 4.45711 4.51885 4.64323 4.65825 4.73738 4.82513
4.85411 4.88710 4.90343 4.96935 5.02001 5.02745 5.09552 5.14759
5.23783 5.25318 5.38100 5.56772 5.75997 5.79853 6.00962 6.07787
6.09693 6.13940 6.71389 6.80146 7.30103 7.50045 8.86026
Molecular weight = 339.19amu
Principal moments of inertia in cm(-1)
A = 0.013101 B = 0.002867 C = 0.002682
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2136.657581 B = 9763.427506 C =10436.456729
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C -0.173 4.173
3 C 0.138 3.862
4 N -0.601 5.601
5 C 0.261 3.739
6 C -0.528 4.528
7 H 0.049 0.951
8 C 0.007 3.993
9 N -0.930 5.930
10 Si 0.961 3.039
11 H -0.282 1.282
12 H -0.273 1.273
13 H -0.264 1.264
14 C 0.495 3.505
15 O -0.598 6.598
16 C -0.118 4.118
17 C -0.106 4.106
18 C 0.085 3.915
19 H 0.094 0.906
20 C -0.147 4.147
21 C -0.134 4.134
22 C 0.056 3.944
23 H 0.075 0.925
24 C 0.235 3.765
25 O -0.383 6.383
26 C 0.019 3.981
27 C 0.017 3.983
28 O -0.406 6.406
29 O -0.378 6.378
30 H 0.105 0.895
31 H 0.103 0.897
32 H 0.097 0.903
33 H 0.111 0.889
34 H 0.082 0.918
35 H -0.003 1.003
36 H 0.022 0.978
37 H 0.266 0.734
38 H 0.097 0.903
39 H 0.116 0.884
40 H 0.075 0.925
41 H 0.044 0.956
42 H 0.103 0.897
43 H 0.074 0.926
44 H 0.090 0.910
45 H 0.102 0.898
46 H 0.114 0.886
47 H 0.093 0.907
48 H 0.125 0.875
49 H 0.118 0.882
50 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.687 -11.660 -25.688 29.517
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.192 4.192
3 C 0.016 3.984
4 N -0.331 5.331
5 C 0.140 3.860
6 C -0.567 4.567
7 H 0.068 0.932
8 C -0.191 4.191
9 N -0.570 5.570
10 Si 0.786 3.214
11 H -0.208 1.208
12 H -0.198 1.198
13 H -0.189 1.189
14 C 0.284 3.716
15 O -0.480 6.480
16 C -0.158 4.158
17 C -0.144 4.144
18 C 0.027 3.973
19 H 0.112 0.888
20 C -0.184 4.184
21 C -0.172 4.172
22 C -0.002 4.002
23 H 0.093 0.907
24 C 0.140 3.860
25 O -0.304 6.304
26 C -0.057 4.057
27 C -0.058 4.058
28 O -0.328 6.328
29 O -0.298 6.298
30 H 0.123 0.877
31 H 0.121 0.879
32 H 0.115 0.885
33 H 0.129 0.871
34 H 0.100 0.900
35 H 0.015 0.985
36 H 0.040 0.960
37 H 0.075 0.925
38 H 0.115 0.885
39 H 0.135 0.865
40 H 0.093 0.907
41 H 0.063 0.937
42 H 0.121 0.879
43 H 0.093 0.907
44 H 0.109 0.891
45 H 0.121 0.879
46 H 0.131 0.869
47 H 0.112 0.888
48 H 0.143 0.857
49 H 0.136 0.864
50 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 8.890 -11.461 -24.972 28.879
hybrid contribution -0.487 -0.444 1.416 1.561
sum 8.403 -11.904 -23.557 27.699
Atomic orbital electron populations
1.23884 0.95527 1.02450 0.99256 1.23184 0.96755 0.98326 1.00969
1.20837 0.92506 0.96066 0.89004 1.48274 1.11554 1.60582 1.12733
1.18740 0.93347 0.93585 0.80329 1.21625 1.39295 0.95232 1.00501
0.93225 1.25797 0.96493 0.98118 0.98740 1.70050 1.47866 1.20986
1.18100 0.85515 0.78116 0.79239 0.78576 1.20796 1.19785 1.18862
1.21512 0.81405 0.77280 0.91358 1.90615 1.54748 1.58018 1.44624
1.21611 0.98506 1.02452 0.93193 1.21679 0.94824 1.00702 0.97224
1.22813 0.91669 0.87493 0.95304 0.88787 1.23162 0.95133 0.98592
1.01560 1.23167 0.95874 0.96321 1.01823 1.23708 0.90232 0.88877
0.97417 0.90712 1.24363 0.87816 0.90455 0.83363 1.89163 1.51182
1.58357 1.31667 1.24533 0.85233 1.00130 0.95802 1.24349 0.92936
1.02552 0.86010 1.88870 1.20913 1.74856 1.48112 1.88511 1.32987
1.16442 1.91833 0.87660 0.87894 0.88487 0.87088 0.89994 0.98486
0.95998 0.92522 0.88492 0.86549 0.90674 0.93666 0.87865 0.90694
0.89113 0.87927 0.86874 0.88847 0.85686 0.86373 0.91453
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -5.13 14.32 67.78 0.97 -4.15 16
2 C -0.17 -5.64 9.74 25.64 0.25 -5.39 16
3 C 0.14 4.53 5.69 85.63 0.49 5.02 16
4 N -0.60 -26.70 2.44 -830.51 -2.03 -28.72 16
5 C 0.26 14.59 5.20 85.63 0.45 15.04 16
6 C -0.53 -31.42 9.39 25.60 0.24 -31.18 16
7 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16
8 C 0.01 0.41 5.46 84.65 0.46 0.87 16
9 N -0.93 -57.66 13.29 21.45 0.28 -57.37 16
10 Si 0.96 46.63 29.54 68.60 2.03 48.66 16
11 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16
12 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16
13 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16
14 C 0.49 21.70 7.67 87.66 0.67 22.38 16
15 O -0.60 -32.38 15.56 -3.02 -0.05 -32.42 16
16 C -0.12 -3.63 4.16 29.85 0.12 -3.51 16
17 C -0.11 -3.08 4.07 30.60 0.12 -2.95 16
18 C 0.08 1.88 3.51 31.06 0.11 1.98 16
19 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16
20 C -0.15 -2.51 6.54 31.85 0.21 -2.30 16
21 C -0.13 -2.03 6.52 32.05 0.21 -1.82 16
22 C 0.06 1.17 3.53 31.26 0.11 1.28 16
23 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16
24 C 0.24 4.46 3.86 71.98 0.28 4.73 16
25 O -0.38 -7.02 10.43 -121.46 -1.27 -8.28 16
26 C 0.02 0.23 7.95 72.64 0.58 0.80 16
27 C 0.02 0.28 8.07 72.64 0.59 0.86 16
28 O -0.41 -9.19 11.19 -123.60 -1.38 -10.58 16
29 O -0.38 -9.72 10.15 -132.13 -1.34 -11.06 16
30 H 0.11 2.79 8.06 -2.91 -0.02 2.76 16
31 H 0.10 2.86 7.84 -2.91 -0.02 2.83 16
32 H 0.10 3.26 7.83 -2.91 -0.02 3.24 16
33 H 0.11 2.75 6.44 -2.39 -0.02 2.74 16
34 H 0.08 2.62 7.54 -2.38 -0.02 2.60 16
35 H 0.00 -0.19 7.42 -2.39 -0.02 -0.21 16
36 H 0.02 1.24 7.89 -2.38 -0.02 1.22 16
37 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16
38 H 0.10 2.96 7.52 -2.38 -0.02 2.94 16
39 H 0.12 2.78 7.40 -2.39 -0.02 2.76 16
40 H 0.07 2.20 8.10 -2.39 -0.02 2.18 16
41 H 0.04 1.55 8.10 -2.39 -0.02 1.53 16
42 H 0.10 1.35 8.14 -2.39 -0.02 1.34 16
43 H 0.07 1.38 7.85 -2.39 -0.02 1.36 16
44 H 0.09 1.33 7.46 -2.38 -0.02 1.31 16
45 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16
46 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16
47 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16
48 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16
49 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16
50 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16
Total: -1.00 -80.94 408.48 3.01 -77.94
By element:
Atomic # 1 Polarization: 19.29 SS G_CDS: 0.90 Total: 20.19 kcal
Atomic # 6 Polarization: -4.20 SS G_CDS: 5.86 Total: 1.66 kcal
Atomic # 7 Polarization: -84.35 SS G_CDS: -1.74 Total: -86.10 kcal
Atomic # 8 Polarization: -58.31 SS G_CDS: -4.04 Total: -62.35 kcal
Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal
Total: -80.94 3.01 -77.94 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000897824258.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -97.209 kcal
(2) G-P(sol) polarization free energy of solvation -80.942 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.151 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.937 kcal
(6) G-S(sol) free energy of system = (1) + (5) -175.146 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds