Wall clock time and date at job start Tue Mar 31 2020 23:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.50696 * 109.47351 * 293.95574 * 3 2 1 5 5 H 1.08007 * 119.99780 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00506 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99253 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00341 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47238 * 59.99702 * 8 6 4 10 10 H 1.48503 * 109.47230 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47102 * 299.99648 * 8 6 4 12 12 C 1.46898 * 111.00443 * 123.95328 * 2 1 3 13 13 C 1.53004 * 109.46619 * 66.04574 * 12 2 1 14 14 H 1.08992 * 109.47535 * 304.99943 * 13 12 2 15 15 O 1.42897 * 109.47256 * 65.00537 * 13 12 2 16 16 C 1.52998 * 109.46799 * 184.99872 * 13 12 2 17 17 S 1.81001 * 109.47034 * 179.97438 * 16 13 12 18 18 C 1.76203 * 99.99829 * 180.02562 * 17 16 13 19 19 N 1.32571 * 119.22521 * 359.73768 * 18 17 16 20 20 C 1.32246 * 120.73257 * 179.71411 * 19 18 17 21 21 C 1.38648 * 119.20396 * 0.54866 * 20 19 18 22 22 C 1.38602 * 118.56778 * 359.72041 * 21 20 19 23 23 C 1.50703 * 120.39807 * 179.97438 * 22 21 20 24 24 C 1.53002 * 109.46834 * 75.02901 * 23 22 21 25 25 C 1.52998 * 109.47029 * 195.02694 * 23 22 21 26 26 C 1.53001 * 109.47002 * 315.02831 * 23 22 21 27 27 N 1.32276 * 119.20398 * 0.02562 * 22 21 20 28 28 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 29 29 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 30 30 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46995 * 53.95554 * 3 2 1 32 32 H 1.09001 * 109.46848 * 173.95560 * 3 2 1 33 33 H 0.96999 * 119.99606 * 179.97438 * 7 6 4 34 34 H 1.08994 * 109.47410 * 186.04624 * 12 2 1 35 35 H 1.08999 * 109.47216 * 306.04953 * 12 2 1 36 36 H 0.96701 * 114.00549 * 59.99438 * 15 13 12 37 37 H 1.08996 * 109.47622 * 300.00336 * 16 13 12 38 38 H 1.09009 * 109.47203 * 60.00381 * 16 13 12 39 39 H 1.08002 * 120.39972 * 180.29853 * 20 19 18 40 40 H 1.07994 * 120.71943 * 179.75416 * 21 20 19 41 41 H 1.08997 * 109.46993 * 60.00074 * 24 23 22 42 42 H 1.09000 * 109.46891 * 179.97438 * 24 23 22 43 43 H 1.08993 * 109.46963 * 300.00050 * 24 23 22 44 44 H 1.08997 * 109.47075 * 60.00283 * 25 23 22 45 45 H 1.09000 * 109.47245 * 180.02562 * 25 23 22 46 46 H 1.08997 * 109.47462 * 300.00332 * 25 23 22 47 47 H 1.09006 * 109.47108 * 60.00088 * 26 23 22 48 48 H 1.09000 * 109.46729 * 180.02562 * 26 23 22 49 49 H 1.08997 * 109.47325 * 299.99853 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0738 1.5116 -2.0484 6 6 2.0275 3.3493 -1.5289 7 7 2.7127 4.0016 -0.6153 8 14 1.5825 4.1870 -3.1380 9 1 0.1052 4.2245 -3.2846 10 1 2.1147 5.5734 -3.1381 11 1 2.1732 3.4295 -4.2705 12 6 1.9956 -0.7659 1.1375 13 6 1.6315 -2.2426 0.9702 14 1 0.5533 -2.3389 0.8432 15 8 2.2957 -2.7695 -0.1801 16 6 2.0701 -3.0199 2.2129 17 16 1.6389 -4.7666 2.0154 18 6 2.2391 -5.4047 3.5442 19 7 2.8137 -4.5802 4.4087 20 6 3.2696 -5.0261 5.5673 21 6 3.1510 -6.3745 5.8672 22 6 2.5500 -7.2097 4.9386 23 6 2.4001 -8.6822 5.2217 24 6 1.2743 -8.8945 6.2359 25 6 2.0632 -9.4194 3.9241 26 6 3.7105 -9.2277 5.7928 27 7 2.1105 -6.6988 3.8003 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.5611 1.9274 0.8309 32 1 3.0797 1.3445 0.1082 33 1 2.9879 4.9175 -0.7776 34 1 3.0798 -0.6610 1.1755 35 1 1.5612 -0.3873 2.0628 36 1 3.2602 -2.7166 -0.1361 37 1 3.1484 -2.9236 2.3400 38 1 1.5636 -2.6180 3.0905 39 1 3.7325 -4.3487 6.2697 40 1 3.5184 -6.7657 6.8043 41 1 0.3408 -8.5059 5.8290 42 1 1.1655 -9.9596 6.4403 43 1 1.5142 -8.3693 7.1603 44 1 2.8652 -9.2682 3.2016 45 1 1.9544 -10.4844 4.1289 46 1 1.1297 -9.0308 3.5172 47 1 3.9505 -8.7025 6.7173 48 1 3.6022 -10.2929 5.9972 49 1 4.5125 -9.0765 5.0703 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899897354.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:07 Heat of formation + Delta-G solvation = -11.354695 kcal Electronic energy + Delta-G solvation = -26397.144830 eV Core-core repulsion = 22678.328634 eV Total energy + Delta-G solvation = -3718.816197 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.34788 -38.08076 -37.53838 -35.53726 -33.57181 -32.54499 -31.92403 -30.98585 -27.86740 -27.73908 -27.48245 -26.65535 -24.98415 -24.79398 -23.94747 -21.52134 -20.51408 -20.25180 -18.13661 -17.49010 -16.64184 -16.33796 -16.05587 -15.72868 -15.42926 -15.12175 -14.95725 -14.72653 -14.45159 -14.35413 -14.26008 -14.03757 -13.72161 -13.16727 -12.88041 -12.74528 -12.53655 -12.33721 -12.11561 -11.89851 -11.76642 -11.67071 -11.55948 -11.38113 -11.32387 -11.01283 -10.93483 -10.91360 -10.81970 -10.69134 -10.53206 -10.28298 -10.25691 -10.08011 -9.68226 -9.52233 -9.15315 -8.42442 -7.87521 -7.22196 -6.01904 -4.02923 0.48762 0.78737 1.08027 2.03298 3.34213 3.35359 3.38810 3.42552 3.62084 4.01327 4.24422 4.39365 4.48135 4.53847 4.54420 4.57693 4.65286 4.78347 4.91277 4.96331 5.11299 5.21215 5.23804 5.25858 5.29053 5.34827 5.38352 5.43671 5.51404 5.56378 5.58990 5.64835 5.67644 5.81056 5.96386 6.01054 6.04217 6.16278 6.24876 6.36173 6.66803 6.76185 7.25822 7.31896 7.62253 7.79631 7.90052 8.08651 8.18852 8.54493 9.04637 9.61189 11.09020 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.033727 B = 0.001795 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.005371 B =15593.776131 C =15980.354545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.530 5.530 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.032 3.968 13 C 0.125 3.875 14 H 0.106 0.894 15 O -0.539 6.539 16 C -0.145 4.145 17 S 0.036 5.964 18 C 0.293 3.707 19 N -0.530 5.530 20 C 0.164 3.836 21 C -0.242 4.242 22 C 0.203 3.797 23 C -0.022 4.022 24 C -0.137 4.137 25 C -0.130 4.130 26 C -0.141 4.141 27 N -0.498 5.498 28 H 0.075 0.925 29 H 0.011 0.989 30 H 0.046 0.954 31 H -0.010 1.010 32 H 0.029 0.971 33 H 0.261 0.739 34 H 0.074 0.926 35 H 0.032 0.968 36 H 0.373 0.627 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.170 0.830 40 H 0.146 0.854 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.067 0.933 47 H 0.061 0.939 48 H 0.068 0.932 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.915 -26.713 17.212 31.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.254 5.254 3 C 0.068 3.932 4 C -0.545 4.545 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.099 4.099 13 C 0.063 3.937 14 H 0.123 0.877 15 O -0.343 6.343 16 C -0.295 4.295 17 S 0.273 5.727 18 C -0.082 4.082 19 N -0.248 5.248 20 C -0.004 4.004 21 C -0.268 4.268 22 C 0.052 3.948 23 C -0.023 4.023 24 C -0.195 4.195 25 C -0.188 4.188 26 C -0.198 4.198 27 N -0.215 5.215 28 H 0.093 0.907 29 H 0.029 0.971 30 H 0.065 0.935 31 H 0.008 0.992 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.220 0.780 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.187 0.813 40 H 0.163 0.837 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.086 0.914 47 H 0.080 0.920 48 H 0.087 0.913 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.367 -26.996 14.722 30.752 hybrid contribution 1.186 1.531 2.318 3.021 sum 0.820 -25.465 17.040 30.651 Atomic orbital electron populations 1.22274 0.88935 0.99216 1.00915 1.62038 1.06891 1.17553 1.38928 1.19748 0.95312 0.81403 0.96692 1.21129 1.34784 0.96877 1.01681 0.91811 1.24996 0.95319 0.97346 0.97040 1.69951 1.38426 1.11511 1.34119 0.86536 0.78697 0.78254 0.83779 1.20290 1.21406 1.20109 1.22665 1.00818 0.92675 0.93739 1.21763 0.98224 0.91297 0.82399 0.87682 1.86623 1.23436 1.83605 1.40684 1.24570 1.06586 0.94155 1.04216 1.86269 1.71388 1.05141 1.09874 1.25377 0.94434 0.88929 0.99426 1.68856 1.13344 1.38522 1.04099 1.23216 0.91011 0.93798 0.92400 1.22588 1.05546 0.95750 1.02885 1.21641 0.88565 0.96429 0.88142 1.19604 0.97069 0.87986 0.97621 1.21869 0.97376 1.02450 0.97800 1.21709 1.03026 0.98788 0.95244 1.21939 0.95507 1.01423 1.00957 1.68368 1.20201 1.12406 1.20503 0.90658 0.97084 0.93501 0.99209 0.95303 0.92908 0.90783 0.95012 0.78022 0.88396 0.88013 0.81320 0.83655 0.92169 0.91296 0.92268 0.92361 0.92476 0.91365 0.92045 0.91329 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 9.17 60.07 0.55 1.24 16 2 N -0.53 -11.42 4.70 -244.37 -1.15 -12.56 16 3 C 0.19 5.05 4.72 -4.97 -0.02 5.03 16 4 C -0.51 -14.35 8.52 -34.44 -0.29 -14.64 16 5 H 0.06 1.80 7.10 -52.48 -0.37 1.43 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.03 0.55 4.60 -3.82 -0.02 0.53 16 13 C 0.12 1.79 2.97 -26.73 -0.08 1.71 16 14 H 0.11 1.57 6.26 -51.93 -0.33 1.24 16 15 O -0.54 -8.27 12.88 -35.23 -0.45 -8.73 16 16 C -0.15 -1.79 4.50 37.16 0.17 -1.62 16 17 S 0.04 0.46 21.89 -107.50 -2.35 -1.89 16 18 C 0.29 3.80 7.85 -90.83 -0.71 3.09 16 19 N -0.53 -6.39 9.14 -13.44 -0.12 -6.51 16 20 C 0.16 1.48 11.30 -17.22 -0.19 1.29 16 21 C -0.24 -1.92 9.21 -39.30 -0.36 -2.28 16 22 C 0.20 1.93 5.57 -82.27 -0.46 1.48 16 23 C -0.02 -0.15 0.88 -155.66 -0.14 -0.29 16 24 C -0.14 -0.78 8.41 37.16 0.31 -0.47 16 25 C -0.13 -0.99 7.83 37.16 0.29 -0.69 16 26 C -0.14 -0.71 8.10 37.16 0.30 -0.41 16 27 N -0.50 -6.12 9.15 -9.67 -0.09 -6.21 16 28 H 0.07 1.59 6.86 -51.93 -0.36 1.24 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.05 0.80 6.21 -51.93 -0.32 0.47 16 31 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 32 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 35 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 36 H 0.37 4.65 9.05 45.56 0.41 5.06 16 37 H 0.10 1.17 8.11 -51.92 -0.42 0.75 16 38 H 0.10 1.23 8.11 -51.91 -0.42 0.81 16 39 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.15 0.71 6.83 -52.49 -0.36 0.35 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.06 0.29 8.12 -51.93 -0.42 -0.13 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.07 0.61 7.88 -51.93 -0.41 0.20 16 47 H 0.06 0.24 6.79 -51.93 -0.35 -0.11 16 48 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 49 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 407.78 15.07 6.15 6.15 Total: -1.00 -33.06 407.78 -10.59 -43.65 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -7.53 Total: -0.02 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -0.75 Total: -4.58 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: -0.62 Total: -51.41 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -0.45 Total: -8.73 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 0.46 SS G_CDS: -2.35 Total: -1.89 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.06 -10.59 -43.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899897354.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.297 kcal (2) G-P(sol) polarization free energy of solvation -33.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds