Wall clock time and date at job start Tue Mar 31 2020 23:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.50696 * 109.47351 * 293.95574 * 3 2 1 5 5 H 1.08007 * 119.99780 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00506 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99253 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00341 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47238 * 59.99702 * 8 6 4 10 10 H 1.48503 * 109.47230 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47102 * 299.99648 * 8 6 4 12 12 C 1.46898 * 111.00443 * 123.95328 * 2 1 3 13 13 C 1.53004 * 109.46619 * 66.04574 * 12 2 1 14 14 H 1.08992 * 109.47535 * 304.99943 * 13 12 2 15 15 O 1.42897 * 109.47256 * 65.00537 * 13 12 2 16 16 C 1.52998 * 109.46799 * 184.99872 * 13 12 2 17 17 S 1.81001 * 109.47034 * 179.97438 * 16 13 12 18 18 C 1.76203 * 99.99829 * 180.02562 * 17 16 13 19 19 N 1.32571 * 119.22521 * 359.73768 * 18 17 16 20 20 C 1.32246 * 120.73257 * 179.71411 * 19 18 17 21 21 C 1.38648 * 119.20396 * 0.54866 * 20 19 18 22 22 C 1.38602 * 118.56778 * 359.72041 * 21 20 19 23 23 C 1.50703 * 120.39807 * 179.97438 * 22 21 20 24 24 C 1.53002 * 109.46834 * 75.02901 * 23 22 21 25 25 C 1.52998 * 109.47029 * 195.02694 * 23 22 21 26 26 C 1.53001 * 109.47002 * 315.02831 * 23 22 21 27 27 N 1.32276 * 119.20398 * 0.02562 * 22 21 20 28 28 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 29 29 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 30 30 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46995 * 53.95554 * 3 2 1 32 32 H 1.09001 * 109.46848 * 173.95560 * 3 2 1 33 33 H 0.96999 * 119.99606 * 179.97438 * 7 6 4 34 34 H 1.08994 * 109.47410 * 186.04624 * 12 2 1 35 35 H 1.08999 * 109.47216 * 306.04953 * 12 2 1 36 36 H 0.96701 * 114.00549 * 59.99438 * 15 13 12 37 37 H 1.08996 * 109.47622 * 300.00336 * 16 13 12 38 38 H 1.09009 * 109.47203 * 60.00381 * 16 13 12 39 39 H 1.08002 * 120.39972 * 180.29853 * 20 19 18 40 40 H 1.07994 * 120.71943 * 179.75416 * 21 20 19 41 41 H 1.08997 * 109.46993 * 60.00074 * 24 23 22 42 42 H 1.09000 * 109.46891 * 179.97438 * 24 23 22 43 43 H 1.08993 * 109.46963 * 300.00050 * 24 23 22 44 44 H 1.08997 * 109.47075 * 60.00283 * 25 23 22 45 45 H 1.09000 * 109.47245 * 180.02562 * 25 23 22 46 46 H 1.08997 * 109.47462 * 300.00332 * 25 23 22 47 47 H 1.09006 * 109.47108 * 60.00088 * 26 23 22 48 48 H 1.09000 * 109.46729 * 180.02562 * 26 23 22 49 49 H 1.08997 * 109.47325 * 299.99853 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0738 1.5116 -2.0484 6 6 2.0275 3.3493 -1.5289 7 7 2.7127 4.0016 -0.6153 8 14 1.5825 4.1870 -3.1380 9 1 0.1052 4.2245 -3.2846 10 1 2.1147 5.5734 -3.1381 11 1 2.1732 3.4295 -4.2705 12 6 1.9956 -0.7659 1.1375 13 6 1.6315 -2.2426 0.9702 14 1 0.5533 -2.3389 0.8432 15 8 2.2957 -2.7695 -0.1801 16 6 2.0701 -3.0199 2.2129 17 16 1.6389 -4.7666 2.0154 18 6 2.2391 -5.4047 3.5442 19 7 2.8137 -4.5802 4.4087 20 6 3.2696 -5.0261 5.5673 21 6 3.1510 -6.3745 5.8672 22 6 2.5500 -7.2097 4.9386 23 6 2.4001 -8.6822 5.2217 24 6 1.2743 -8.8945 6.2359 25 6 2.0632 -9.4194 3.9241 26 6 3.7105 -9.2277 5.7928 27 7 2.1105 -6.6988 3.8003 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.5611 1.9274 0.8309 32 1 3.0797 1.3445 0.1082 33 1 2.9879 4.9175 -0.7776 34 1 3.0798 -0.6610 1.1755 35 1 1.5612 -0.3873 2.0628 36 1 3.2602 -2.7166 -0.1361 37 1 3.1484 -2.9236 2.3400 38 1 1.5636 -2.6180 3.0905 39 1 3.7325 -4.3487 6.2697 40 1 3.5184 -6.7657 6.8043 41 1 0.3408 -8.5059 5.8290 42 1 1.1655 -9.9596 6.4403 43 1 1.5142 -8.3693 7.1603 44 1 2.8652 -9.2682 3.2016 45 1 1.9544 -10.4844 4.1289 46 1 1.1297 -9.0308 3.5172 47 1 3.9505 -8.7025 6.7173 48 1 3.6022 -10.2929 5.9972 49 1 4.5125 -9.0765 5.0703 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899897354.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:06 Heat of formation + Delta-G solvation = -33.984454 kcal Electronic energy + Delta-G solvation = -26398.126130 eV Core-core repulsion = 22678.328634 eV Total energy + Delta-G solvation = -3719.797497 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.08577 -39.47225 -38.12150 -37.12367 -34.62874 -34.33710 -32.71119 -32.17447 -29.41277 -28.38303 -28.18454 -28.14286 -26.12970 -25.63919 -25.24541 -23.03413 -21.87970 -21.12208 -18.98988 -18.56749 -18.23373 -17.34522 -17.25969 -16.84479 -16.71481 -16.24884 -16.00182 -15.93579 -15.69766 -15.40824 -15.13352 -14.87854 -14.75867 -14.52554 -14.08481 -13.86220 -13.61633 -13.23889 -13.19445 -12.99717 -12.85077 -12.67380 -12.61134 -12.55523 -12.46928 -12.33573 -12.29537 -12.14653 -12.07032 -11.88365 -11.68248 -11.56614 -11.48063 -11.34813 -10.97186 -10.88829 -10.61004 -10.30838 -8.98510 -8.81899 -8.20465 -6.30136 -0.27703 0.07195 0.15112 1.07598 1.41422 1.44617 1.52532 2.40665 2.58709 2.96512 3.10894 3.14821 3.40067 3.50964 3.55845 3.80422 3.88477 3.96885 3.98332 4.02528 4.10326 4.26379 4.27757 4.32677 4.50542 4.60952 4.62639 4.70972 4.72627 4.75401 4.76004 4.86360 4.97049 4.97324 4.99080 5.07931 5.08738 5.17009 5.19729 5.30605 5.36547 5.36765 5.42388 5.64763 5.94821 6.04383 6.30174 6.60447 6.83972 6.84150 6.86812 7.39331 8.90245 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.033727 B = 0.001795 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.005371 B =15593.776131 C =15980.354545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.540 5.540 3 C 0.208 3.792 4 C -0.525 4.525 5 H 0.061 0.939 6 C 0.001 3.999 7 N -0.934 5.934 8 Si 0.969 3.031 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.269 1.269 12 C 0.033 3.967 13 C 0.140 3.860 14 H 0.103 0.897 15 O -0.554 6.554 16 C -0.126 4.126 17 S 0.012 5.988 18 C 0.274 3.726 19 N -0.549 5.549 20 C 0.152 3.848 21 C -0.226 4.226 22 C 0.186 3.814 23 C -0.022 4.022 24 C -0.133 4.133 25 C -0.128 4.128 26 C -0.137 4.137 27 N -0.521 5.521 28 H 0.056 0.944 29 H 0.012 0.988 30 H 0.077 0.923 31 H -0.037 1.037 32 H 0.006 0.994 33 H 0.264 0.736 34 H 0.074 0.926 35 H 0.038 0.962 36 H 0.384 0.616 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.202 0.798 40 H 0.183 0.817 41 H 0.041 0.959 42 H 0.086 0.914 43 H 0.071 0.929 44 H 0.041 0.959 45 H 0.076 0.924 46 H 0.046 0.954 47 H 0.078 0.922 48 H 0.084 0.916 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.148 -28.240 18.644 33.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.264 5.264 3 C 0.082 3.918 4 C -0.563 4.563 5 H 0.079 0.921 6 C -0.197 4.197 7 N -0.574 5.574 8 Si 0.794 3.206 9 H -0.193 1.193 10 H -0.208 1.208 11 H -0.194 1.194 12 C -0.098 4.098 13 C 0.078 3.922 14 H 0.121 0.879 15 O -0.360 6.360 16 C -0.276 4.276 17 S 0.249 5.751 18 C -0.101 4.101 19 N -0.267 5.267 20 C -0.015 4.015 21 C -0.251 4.251 22 C 0.037 3.963 23 C -0.023 4.023 24 C -0.191 4.191 25 C -0.185 4.185 26 C -0.194 4.194 27 N -0.238 5.238 28 H 0.075 0.925 29 H 0.031 0.969 30 H 0.095 0.905 31 H -0.019 1.019 32 H 0.024 0.976 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.233 0.767 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.219 0.781 40 H 0.200 0.800 41 H 0.060 0.940 42 H 0.105 0.895 43 H 0.090 0.910 44 H 0.061 0.939 45 H 0.095 0.905 46 H 0.066 0.934 47 H 0.096 0.904 48 H 0.102 0.898 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.128 -28.556 16.178 32.821 hybrid contribution 1.156 1.878 2.006 2.981 sum 1.028 -26.678 18.184 32.302 Atomic orbital electron populations 1.22261 0.87794 1.00911 1.00065 1.61928 1.08030 1.15057 1.41411 1.19398 0.93756 0.83670 0.94979 1.21445 1.34886 0.97512 1.02440 0.92064 1.25905 0.95037 0.98034 1.00697 1.70073 1.39310 1.11916 1.36139 0.85438 0.78802 0.77158 0.79227 1.19304 1.20751 1.19434 1.22740 1.00740 0.93884 0.92422 1.21528 0.98009 0.89493 0.83141 0.87940 1.86589 1.24622 1.83559 1.41237 1.24288 1.06689 0.93668 1.02933 1.86205 1.72271 1.05370 1.11272 1.25197 0.95847 0.89487 0.99572 1.68831 1.13867 1.38893 1.05156 1.23861 0.90593 0.95094 0.91935 1.22991 1.03468 0.95069 1.03543 1.22235 0.88387 0.97973 0.87746 1.19733 0.98686 0.86318 0.97546 1.21859 0.95896 1.03726 0.97634 1.21677 1.01304 1.00085 0.95463 1.21936 0.93761 1.02576 1.01162 1.68337 1.21069 1.12289 1.22128 0.92500 0.96919 0.90475 1.01917 0.97608 0.92686 0.90768 0.94383 0.76696 0.88032 0.87726 0.78108 0.79985 0.93985 0.89529 0.91013 0.93947 0.90495 0.93439 0.90352 0.89754 0.93322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.49 9.17 127.69 1.17 2.66 16 2 N -0.54 -23.54 4.70 -927.04 -4.36 -27.89 16 3 C 0.21 11.20 4.72 85.55 0.40 11.61 16 4 C -0.52 -30.25 8.52 25.60 0.22 -30.03 16 5 H 0.06 3.49 7.10 -2.91 -0.02 3.47 16 6 C 0.00 0.07 5.46 84.65 0.46 0.53 16 7 N -0.93 -56.56 13.29 21.45 0.28 -56.28 16 8 Si 0.97 44.92 29.54 68.60 2.03 46.95 16 9 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 12 C 0.03 1.12 4.60 86.30 0.40 1.51 16 13 C 0.14 3.95 2.97 30.60 0.09 4.04 16 14 H 0.10 2.97 6.26 -2.39 -0.01 2.95 16 15 O -0.55 -16.80 12.88 -148.98 -1.92 -18.71 16 16 C -0.13 -3.05 4.50 71.98 0.32 -2.73 16 17 S 0.01 0.31 21.89 -56.49 -1.24 -0.93 16 18 C 0.27 7.10 7.85 180.42 1.42 8.52 16 19 N -0.55 -12.75 9.14 -196.42 -1.79 -14.54 16 20 C 0.15 2.42 11.30 84.73 0.96 3.38 16 21 C -0.23 -2.98 9.21 22.45 0.21 -2.77 16 22 C 0.19 3.31 5.57 42.58 0.24 3.54 16 23 C -0.02 -0.26 0.88 -52.93 -0.05 -0.31 16 24 C -0.13 -1.22 8.41 71.98 0.61 -0.61 16 25 C -0.13 -1.87 7.83 71.98 0.56 -1.31 16 26 C -0.14 -0.99 8.10 71.98 0.58 -0.41 16 27 N -0.52 -12.81 9.15 -184.51 -1.69 -14.50 16 28 H 0.06 2.42 6.86 -2.39 -0.02 2.41 16 29 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.08 2.55 6.21 -2.38 -0.01 2.53 16 31 H -0.04 -2.14 8.12 -2.39 -0.02 -2.16 16 32 H 0.01 0.33 7.93 -2.39 -0.02 0.32 16 33 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 34 H 0.07 2.51 7.93 -2.39 -0.02 2.50 16 35 H 0.04 1.26 8.12 -2.39 -0.02 1.25 16 36 H 0.38 9.49 9.05 -74.06 -0.67 8.82 16 37 H 0.10 2.38 8.11 -2.40 -0.02 2.36 16 38 H 0.10 2.48 8.11 -2.39 -0.02 2.46 16 39 H 0.20 1.68 8.06 -2.91 -0.02 1.66 16 40 H 0.18 0.95 6.83 -2.91 -0.02 0.93 16 41 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.07 0.48 8.12 -2.39 -0.02 0.46 16 44 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.05 0.88 7.88 -2.39 -0.02 0.86 16 47 H 0.08 0.31 6.79 -2.38 -0.02 0.29 16 48 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 49 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -72.99 407.78 -0.83 -73.82 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.26 Total: 14.45 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 7.59 Total: -2.37 kcal Atomic # 7 Polarization: -105.66 SS G_CDS: -7.56 Total: -113.22 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -1.92 Total: -18.71 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 16 Polarization: 0.31 SS G_CDS: -1.24 Total: -0.93 kcal Total: -72.99 -0.83 -73.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899897354.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.837 kcal (2) G-P(sol) polarization free energy of solvation -72.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds