Wall clock time and date at job start Tue Mar 31 2020 23:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35999 * 117.00050 * 2 1 4 4 C 1.38560 * 120.07219 * 359.97438 * 3 2 1 5 5 C 1.38247 * 119.99996 * 179.97438 * 4 3 2 6 6 C 1.38247 * 120.14385 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.92543 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.46912 * 90.00236 * 7 6 5 9 9 C 1.53002 * 109.47233 * 299.99748 * 8 7 6 10 10 C 1.52996 * 109.47328 * 60.00217 * 8 7 6 11 11 O 1.42893 * 109.47484 * 64.99835 * 10 8 7 12 12 N 1.46901 * 109.46769 * 180.02562 * 8 7 6 13 13 C 1.46906 * 110.99793 * 179.97438 * 12 8 7 14 14 C 1.52999 * 109.46807 * 179.97438 * 13 12 8 15 15 H 1.08995 * 109.47212 * 60.00180 * 14 13 12 16 16 O 1.42901 * 109.47318 * 299.99505 * 14 13 12 17 17 C 1.50708 * 109.46896 * 179.97438 * 14 13 12 18 18 H 1.08001 * 120.00058 * 359.97438 * 17 14 13 19 19 C 1.37877 * 119.99924 * 179.97438 * 17 14 13 20 20 N 1.31514 * 120.00135 * 0.02562 * 19 17 14 21 21 Si 1.86798 * 119.99783 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.47105 * 60.00123 * 21 19 17 23 23 H 1.48498 * 109.46947 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47316 * 299.99744 * 21 19 17 25 25 C 1.38241 * 120.14765 * 0.27560 * 6 5 4 26 26 C 1.38565 * 120.00042 * 359.45451 * 25 6 5 27 27 O 1.35993 * 120.07527 * 180.29791 * 26 25 6 28 28 C 1.42905 * 117.00070 * 0.24684 * 27 26 25 29 29 H 1.08999 * 109.47450 * 300.00555 * 1 2 3 30 30 H 1.09008 * 109.47040 * 60.00779 * 1 2 3 31 31 H 1.09006 * 109.47225 * 180.02562 * 1 2 3 32 32 H 1.07999 * 119.99934 * 359.97438 * 4 3 2 33 33 H 1.08001 * 119.92510 * 179.97438 * 5 4 3 34 34 H 1.09002 * 109.47152 * 330.00008 * 7 6 5 35 35 H 1.09001 * 109.46980 * 210.00108 * 7 6 5 36 36 H 1.09000 * 109.46986 * 60.00203 * 9 8 7 37 37 H 1.08993 * 109.47662 * 180.02562 * 9 8 7 38 38 H 1.09002 * 109.47075 * 300.00932 * 9 8 7 39 39 H 1.09006 * 109.47002 * 185.00189 * 10 8 7 40 40 H 1.08998 * 109.47140 * 304.99649 * 10 8 7 41 41 H 0.96696 * 114.00700 * 179.97438 * 11 10 8 42 42 H 1.00899 * 111.00283 * 56.04461 * 12 8 7 43 43 H 1.09006 * 109.46661 * 299.99622 * 13 12 8 44 44 H 1.08995 * 109.47087 * 60.00099 * 13 12 8 45 45 H 0.96701 * 114.00165 * 300.00585 * 16 14 13 46 46 H 0.97000 * 119.99919 * 180.02562 * 20 19 17 47 47 H 1.08006 * 119.99775 * 179.70393 * 25 6 5 48 48 H 1.08999 * 109.47206 * 59.99879 * 28 27 26 49 49 H 1.08995 * 109.46982 * 180.02562 * 28 27 26 50 50 H 1.09000 * 109.46529 * 300.00277 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2932 2.3748 -0.0005 5 6 1.9224 3.6058 0.0000 6 6 3.3029 3.6798 0.0016 7 6 3.9836 5.0243 0.0028 8 6 4.2124 5.4789 1.4457 9 6 2.8667 5.5880 2.1655 10 6 5.0957 4.4594 2.1676 11 8 6.3921 4.4422 1.5667 12 7 4.8754 6.7897 1.4468 13 6 5.1111 7.2593 2.8187 14 6 5.8021 8.6238 2.7790 15 1 5.1668 9.3376 2.2548 16 8 7.0511 8.5056 2.0948 17 6 6.0433 9.1058 4.1864 18 1 5.7343 8.4997 5.0252 19 6 6.6585 10.3205 4.4031 20 7 7.0344 11.0588 3.3817 21 14 6.9569 10.9182 6.1475 22 1 7.8214 9.9456 6.8630 23 1 7.6276 12.2426 6.1090 24 1 5.6584 11.0421 6.8573 25 6 4.0602 2.5233 -0.0031 26 6 3.4359 1.2863 0.0020 27 8 4.1795 0.1477 0.0036 28 6 5.6003 0.3006 0.0052 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 0.2146 2.3196 -0.0014 33 1 1.3341 4.5115 -0.0008 34 1 3.3543 5.7507 -0.5116 35 1 4.9423 4.9466 -0.5100 36 1 2.3743 4.6155 2.1646 37 1 3.0295 5.9122 3.1932 38 1 2.2373 6.3143 1.6511 39 1 5.1858 4.7361 3.2181 40 1 4.6461 3.4695 2.0899 41 1 7.0066 3.8172 1.9750 42 1 4.3419 7.4653 0.9204 43 1 4.1584 7.3490 3.3406 44 1 5.7468 6.5457 3.3427 45 1 7.6680 7.8852 2.5067 46 1 7.4675 11.9132 3.5342 47 1 5.1386 2.5840 -0.0066 48 1 5.9055 0.8509 0.8952 49 1 6.0715 -0.6822 0.0059 50 1 5.9075 0.8499 -0.8847 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933446370.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:56 Heat of formation + Delta-G solvation = -141.906656 kcal Electronic energy + Delta-G solvation = -30744.589607 eV Core-core repulsion = 26545.066631 eV Total energy + Delta-G solvation = -4199.522977 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.86086 -39.02219 -38.58714 -36.94081 -35.82596 -34.80298 -32.17819 -31.95222 -30.54614 -29.80041 -27.91248 -27.46544 -27.44924 -26.33724 -25.69180 -24.02349 -22.28865 -21.69079 -20.41640 -19.16116 -18.38601 -17.24375 -17.04872 -16.84160 -16.79414 -16.31257 -15.82777 -15.43853 -14.96140 -14.90506 -14.71924 -14.56869 -14.20230 -14.11258 -13.93395 -13.56499 -13.28596 -13.00928 -12.85242 -12.71098 -12.41368 -12.39674 -12.21080 -12.02807 -11.69323 -11.45575 -11.39082 -11.25767 -11.09666 -11.09235 -10.91368 -10.84841 -10.74451 -10.60109 -10.28484 -10.00362 -9.67916 -8.92149 -8.78366 -8.53563 -8.01806 -7.86561 -7.60023 -5.96361 -4.14655 1.12938 1.27793 3.06188 3.09870 3.29856 3.35399 3.36690 3.53293 4.30443 4.42893 4.56874 4.62743 4.75456 4.85268 4.88157 4.91433 4.99548 5.01321 5.05002 5.13147 5.19516 5.22261 5.29385 5.31199 5.33312 5.47492 5.52332 5.60607 5.68918 5.76245 5.91184 6.01210 6.05104 6.12441 6.14103 6.22804 6.31720 6.40426 6.51674 6.59639 6.67142 6.85182 6.94570 7.39704 7.68739 7.75131 7.89371 7.90263 8.04997 8.26418 8.89184 9.52142 9.70140 11.07644 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.021547 B = 0.002401 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.177913 B =11657.393698 C =12150.604562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.088 3.912 4 C -0.172 4.172 5 C -0.113 4.113 6 C -0.064 4.064 7 C -0.065 4.065 8 C 0.122 3.878 9 C -0.187 4.187 10 C 0.089 3.911 11 O -0.545 6.545 12 N -0.656 5.656 13 C 0.035 3.965 14 C 0.236 3.764 15 H 0.049 0.951 16 O -0.553 6.553 17 C -0.573 4.573 18 H 0.052 0.948 19 C 0.079 3.921 20 N -0.858 5.858 21 Si 0.888 3.112 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.277 1.277 25 C -0.163 4.163 26 C 0.097 3.903 27 O -0.310 6.310 28 C 0.027 3.973 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.098 0.902 32 H 0.132 0.868 33 H 0.126 0.874 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.041 0.959 40 H 0.042 0.958 41 H 0.365 0.635 42 H 0.334 0.666 43 H 0.021 0.979 44 H 0.061 0.939 45 H 0.343 0.657 46 H 0.260 0.740 47 H 0.140 0.860 48 H 0.055 0.945 49 H 0.098 0.902 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.856 -22.189 -7.294 25.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.224 6.224 3 C 0.043 3.957 4 C -0.191 4.191 5 C -0.132 4.132 6 C -0.065 4.065 7 C -0.102 4.102 8 C 0.030 3.970 9 C -0.246 4.246 10 C 0.011 3.989 11 O -0.348 6.348 12 N -0.286 5.286 13 C -0.094 4.094 14 C 0.178 3.822 15 H 0.066 0.934 16 O -0.354 6.354 17 C -0.611 4.611 18 H 0.070 0.930 19 C -0.127 4.127 20 N -0.494 5.494 21 Si 0.715 3.285 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.203 1.203 25 C -0.182 4.182 26 C 0.052 3.948 27 O -0.223 6.223 28 C -0.069 4.069 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.116 0.884 32 H 0.150 0.850 33 H 0.144 0.856 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.209 0.791 42 H 0.152 0.848 43 H 0.040 0.960 44 H 0.079 0.921 45 H 0.186 0.814 46 H 0.070 0.930 47 H 0.158 0.842 48 H 0.073 0.927 49 H 0.117 0.883 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.676 -21.748 -8.221 25.585 hybrid contribution -0.472 0.128 2.213 2.266 sum -11.149 -21.621 -6.008 25.057 Atomic orbital electron populations 1.23032 0.78840 1.03759 1.01155 1.86153 1.20780 1.26122 1.89307 1.18222 0.89133 0.85110 1.03222 1.21019 0.99747 0.91511 1.06829 1.20811 0.93998 0.96972 1.01383 1.19627 0.93080 0.94966 0.98804 1.20542 1.01094 0.92035 0.96548 1.20794 0.90782 0.91599 0.93776 1.22622 0.98013 1.02155 1.01787 1.22222 0.84127 0.96954 0.95633 1.86668 1.22568 1.65308 1.60250 1.60550 1.50420 1.01899 1.15702 1.22934 0.98654 1.00455 0.87373 1.19255 0.82999 0.88228 0.91699 0.93357 1.86543 1.27431 1.66333 1.55124 1.21609 1.42142 1.04650 0.92738 0.92971 1.25023 0.94744 0.96368 0.96533 1.70073 1.37952 1.11668 1.29686 0.86760 0.78409 0.78040 0.85256 1.20196 1.21202 1.20292 1.21094 1.00793 0.90296 1.06032 1.18249 0.88163 0.86115 1.02321 1.86146 1.18695 1.28351 1.89158 1.23064 0.78590 1.03682 1.01529 0.92814 0.92823 0.88401 0.84999 0.85590 0.91124 0.89259 0.92080 0.91932 0.92154 0.94060 0.94002 0.79071 0.84814 0.96047 0.92105 0.81374 0.92992 0.84206 0.92654 0.88347 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.57 10.28 -34.24 -0.35 -3.92 16 3 C 0.09 1.05 6.70 -39.12 -0.26 0.79 16 4 C -0.17 -1.75 9.04 -39.46 -0.36 -2.11 16 5 C -0.11 -1.19 7.87 -39.57 -0.31 -1.50 16 6 C -0.06 -0.74 4.01 -104.62 -0.42 -1.16 16 7 C -0.06 -0.82 4.61 -27.88 -0.13 -0.95 16 8 C 0.12 1.73 0.52 -131.60 -0.07 1.66 16 9 C -0.19 -2.42 7.63 37.16 0.28 -2.14 16 10 C 0.09 1.21 4.98 37.16 0.19 1.40 16 11 O -0.55 -7.59 12.96 -35.23 -0.46 -8.05 16 12 N -0.66 -11.58 5.72 -99.96 -0.57 -12.15 16 13 C 0.03 0.70 4.50 -3.82 -0.02 0.69 16 14 C 0.24 6.02 3.03 -27.88 -0.08 5.94 16 15 H 0.05 1.35 8.14 -51.93 -0.42 0.93 16 16 O -0.55 -14.72 12.60 -35.23 -0.44 -15.17 16 17 C -0.57 -15.80 8.76 -34.44 -0.30 -16.11 16 18 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 19 C 0.08 2.24 5.40 -17.82 -0.10 2.15 16 20 N -0.86 -25.64 12.84 55.43 0.71 -24.93 16 21 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C -0.16 -1.88 6.76 -39.46 -0.27 -2.15 16 26 C 0.10 1.19 6.70 -39.12 -0.26 0.93 16 27 O -0.31 -3.72 10.28 -34.22 -0.35 -4.08 16 28 C 0.03 0.21 9.81 101.05 0.99 1.21 16 29 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 30 H 0.05 0.31 7.66 -51.92 -0.40 -0.09 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.13 1.01 6.30 -52.49 -0.33 0.68 16 33 H 0.13 1.15 8.02 -52.49 -0.42 0.73 16 34 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 35 H 0.09 1.26 7.76 -51.93 -0.40 0.86 16 36 H 0.06 0.72 6.17 -51.93 -0.32 0.40 16 37 H 0.06 0.89 6.40 -51.93 -0.33 0.56 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.04 0.61 6.68 -51.93 -0.35 0.26 16 40 H 0.04 0.52 5.84 -51.93 -0.30 0.21 16 41 H 0.36 3.49 9.12 45.56 0.42 3.91 16 42 H 0.33 5.88 8.72 -39.29 -0.34 5.53 16 43 H 0.02 0.43 6.30 -51.93 -0.33 0.10 16 44 H 0.06 1.26 6.42 -51.93 -0.33 0.93 16 45 H 0.34 8.42 9.04 45.56 0.41 8.83 16 46 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 47 H 0.14 1.51 6.28 -52.48 -0.33 1.18 16 48 H 0.05 0.41 7.67 -51.93 -0.40 0.01 16 49 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.06 0.42 7.65 -51.93 -0.40 0.02 16 LS Contribution 396.11 15.07 5.97 5.97 Total: -1.00 -34.08 396.11 -6.85 -40.93 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: -6.21 Total: 15.30 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -0.12 Total: -10.18 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.14 Total: -37.08 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -1.60 Total: -31.21 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.08 -6.85 -40.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933446370.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.975 kcal (2) G-P(sol) polarization free energy of solvation -34.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds