Wall clock time and date at job start Tue Mar 31 2020 23:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35999 * 117.00050 * 2 1 4 4 C 1.38560 * 120.07219 * 359.97438 * 3 2 1 5 5 C 1.38247 * 119.99996 * 179.97438 * 4 3 2 6 6 C 1.38247 * 120.14385 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.92543 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.46912 * 90.00236 * 7 6 5 9 9 C 1.53002 * 109.47233 * 299.99748 * 8 7 6 10 10 C 1.52996 * 109.47328 * 60.00217 * 8 7 6 11 11 O 1.42893 * 109.47484 * 64.99835 * 10 8 7 12 12 N 1.46901 * 109.46769 * 180.02562 * 8 7 6 13 13 C 1.46906 * 110.99793 * 179.97438 * 12 8 7 14 14 C 1.52999 * 109.46807 * 179.97438 * 13 12 8 15 15 H 1.08995 * 109.47212 * 60.00180 * 14 13 12 16 16 O 1.42901 * 109.47318 * 299.99505 * 14 13 12 17 17 C 1.50708 * 109.46896 * 179.97438 * 14 13 12 18 18 H 1.08001 * 120.00058 * 359.97438 * 17 14 13 19 19 C 1.37877 * 119.99924 * 179.97438 * 17 14 13 20 20 N 1.31514 * 120.00135 * 0.02562 * 19 17 14 21 21 Si 1.86798 * 119.99783 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.47105 * 60.00123 * 21 19 17 23 23 H 1.48498 * 109.46947 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47316 * 299.99744 * 21 19 17 25 25 C 1.38241 * 120.14765 * 0.27560 * 6 5 4 26 26 C 1.38565 * 120.00042 * 359.45451 * 25 6 5 27 27 O 1.35993 * 120.07527 * 180.29791 * 26 25 6 28 28 C 1.42905 * 117.00070 * 0.24684 * 27 26 25 29 29 H 1.08999 * 109.47450 * 300.00555 * 1 2 3 30 30 H 1.09008 * 109.47040 * 60.00779 * 1 2 3 31 31 H 1.09006 * 109.47225 * 180.02562 * 1 2 3 32 32 H 1.07999 * 119.99934 * 359.97438 * 4 3 2 33 33 H 1.08001 * 119.92510 * 179.97438 * 5 4 3 34 34 H 1.09002 * 109.47152 * 330.00008 * 7 6 5 35 35 H 1.09001 * 109.46980 * 210.00108 * 7 6 5 36 36 H 1.09000 * 109.46986 * 60.00203 * 9 8 7 37 37 H 1.08993 * 109.47662 * 180.02562 * 9 8 7 38 38 H 1.09002 * 109.47075 * 300.00932 * 9 8 7 39 39 H 1.09006 * 109.47002 * 185.00189 * 10 8 7 40 40 H 1.08998 * 109.47140 * 304.99649 * 10 8 7 41 41 H 0.96696 * 114.00700 * 179.97438 * 11 10 8 42 42 H 1.00899 * 111.00283 * 56.04461 * 12 8 7 43 43 H 1.09006 * 109.46661 * 299.99622 * 13 12 8 44 44 H 1.08995 * 109.47087 * 60.00099 * 13 12 8 45 45 H 0.96701 * 114.00165 * 300.00585 * 16 14 13 46 46 H 0.97000 * 119.99919 * 180.02562 * 20 19 17 47 47 H 1.08006 * 119.99775 * 179.70393 * 25 6 5 48 48 H 1.08999 * 109.47206 * 59.99879 * 28 27 26 49 49 H 1.08995 * 109.46982 * 180.02562 * 28 27 26 50 50 H 1.09000 * 109.46529 * 300.00277 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2932 2.3748 -0.0005 5 6 1.9224 3.6058 0.0000 6 6 3.3029 3.6798 0.0016 7 6 3.9836 5.0243 0.0028 8 6 4.2124 5.4789 1.4457 9 6 2.8667 5.5880 2.1655 10 6 5.0957 4.4594 2.1676 11 8 6.3921 4.4422 1.5667 12 7 4.8754 6.7897 1.4468 13 6 5.1111 7.2593 2.8187 14 6 5.8021 8.6238 2.7790 15 1 5.1668 9.3376 2.2548 16 8 7.0511 8.5056 2.0948 17 6 6.0433 9.1058 4.1864 18 1 5.7343 8.4997 5.0252 19 6 6.6585 10.3205 4.4031 20 7 7.0344 11.0588 3.3817 21 14 6.9569 10.9182 6.1475 22 1 7.8214 9.9456 6.8630 23 1 7.6276 12.2426 6.1090 24 1 5.6584 11.0421 6.8573 25 6 4.0602 2.5233 -0.0031 26 6 3.4359 1.2863 0.0020 27 8 4.1795 0.1477 0.0036 28 6 5.6003 0.3006 0.0052 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 0.2146 2.3196 -0.0014 33 1 1.3341 4.5115 -0.0008 34 1 3.3543 5.7507 -0.5116 35 1 4.9423 4.9466 -0.5100 36 1 2.3743 4.6155 2.1646 37 1 3.0295 5.9122 3.1932 38 1 2.2373 6.3143 1.6511 39 1 5.1858 4.7361 3.2181 40 1 4.6461 3.4695 2.0899 41 1 7.0066 3.8172 1.9750 42 1 4.3419 7.4653 0.9204 43 1 4.1584 7.3490 3.3406 44 1 5.7468 6.5457 3.3427 45 1 7.6680 7.8852 2.5067 46 1 7.4675 11.9132 3.5342 47 1 5.1386 2.5840 -0.0066 48 1 5.9055 0.8509 0.8952 49 1 6.0715 -0.6822 0.0059 50 1 5.9075 0.8499 -0.8847 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933446370.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:55 Heat of formation + Delta-G solvation = -169.879713 kcal Electronic energy + Delta-G solvation = -30745.802610 eV Core-core repulsion = 26545.066631 eV Total energy + Delta-G solvation = -4200.735979 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.68664 -40.10722 -39.36578 -38.07339 -37.36154 -36.15102 -34.20120 -33.30380 -31.35939 -30.97454 -29.21169 -28.69863 -28.06604 -27.40486 -26.77810 -25.73181 -23.08246 -22.83172 -22.02823 -20.28164 -19.23599 -18.87413 -18.17433 -17.95868 -17.65274 -17.29802 -16.93550 -16.64137 -16.22726 -16.12087 -15.92119 -15.72548 -15.50610 -15.44592 -15.02836 -14.74833 -14.42153 -14.30679 -14.17540 -13.99029 -13.47489 -13.25735 -13.13271 -13.05277 -12.89251 -12.88490 -12.81202 -12.61374 -12.31768 -12.25338 -12.06252 -12.05639 -11.99212 -11.85639 -11.78495 -11.31626 -10.98538 -10.76168 -10.66136 -10.02293 -9.61224 -9.05203 -8.71102 -8.10915 -6.36898 0.30916 0.43182 1.40627 1.42310 1.50480 2.37900 2.38999 2.39659 2.68625 3.14410 3.21813 3.52911 3.82723 3.90995 3.99221 4.03324 4.10081 4.25586 4.37098 4.38388 4.39848 4.41167 4.42855 4.46554 4.47866 4.50807 4.58436 4.63537 4.66606 4.72791 4.74173 4.76039 4.79776 4.92945 4.96858 5.12173 5.15386 5.22502 5.31477 5.34686 5.62551 5.68035 5.77210 5.81318 6.09048 6.12720 6.32034 6.58892 6.63673 6.77720 7.03650 7.37065 7.65989 8.93196 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.021547 B = 0.002401 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.177913 B =11657.393698 C =12150.604562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.333 6.333 3 C 0.076 3.924 4 C -0.168 4.168 5 C -0.113 4.113 6 C -0.073 4.073 7 C -0.054 4.054 8 C 0.120 3.880 9 C -0.180 4.180 10 C 0.093 3.907 11 O -0.563 6.563 12 N -0.664 5.664 13 C 0.060 3.940 14 C 0.235 3.765 15 H 0.015 0.985 16 O -0.569 6.569 17 C -0.586 4.586 18 H 0.057 0.943 19 C 0.025 3.975 20 N -0.899 5.899 21 Si 0.959 3.041 22 H -0.268 1.268 23 H -0.285 1.285 24 H -0.268 1.268 25 C -0.164 4.164 26 C 0.079 3.921 27 O -0.330 6.330 28 C 0.020 3.980 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.115 0.885 32 H 0.158 0.842 33 H 0.143 0.857 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.048 0.952 38 H 0.067 0.933 39 H 0.029 0.971 40 H 0.057 0.943 41 H 0.383 0.617 42 H 0.333 0.667 43 H 0.024 0.976 44 H 0.059 0.941 45 H 0.350 0.650 46 H 0.261 0.739 47 H 0.142 0.858 48 H 0.061 0.939 49 H 0.118 0.882 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.101 -23.392 -6.561 27.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.030 3.970 4 C -0.186 4.186 5 C -0.131 4.131 6 C -0.074 4.074 7 C -0.091 4.091 8 C 0.029 3.971 9 C -0.238 4.238 10 C 0.015 3.985 11 O -0.369 6.369 12 N -0.294 5.294 13 C -0.069 4.069 14 C 0.177 3.823 15 H 0.033 0.967 16 O -0.371 6.371 17 C -0.625 4.625 18 H 0.075 0.925 19 C -0.178 4.178 20 N -0.536 5.536 21 Si 0.783 3.217 22 H -0.193 1.193 23 H -0.210 1.210 24 H -0.193 1.193 25 C -0.183 4.183 26 C 0.034 3.966 27 O -0.245 6.245 28 C -0.074 4.074 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.133 0.867 32 H 0.175 0.825 33 H 0.160 0.840 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.047 0.953 40 H 0.075 0.925 41 H 0.230 0.770 42 H 0.150 0.850 43 H 0.042 0.958 44 H 0.077 0.923 45 H 0.194 0.806 46 H 0.069 0.931 47 H 0.160 0.840 48 H 0.079 0.921 49 H 0.136 0.864 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.926 -22.987 -7.479 26.955 hybrid contribution -0.104 0.404 1.912 1.957 sum -12.030 -22.583 -5.567 26.186 Atomic orbital electron populations 1.23327 0.76679 1.05382 1.02224 1.86122 1.23133 1.26245 1.89286 1.18518 0.89375 0.85872 1.03202 1.21280 1.00992 0.90683 1.05686 1.21013 0.93621 0.97848 1.00588 1.19538 0.93641 0.94124 1.00049 1.20376 1.00559 0.92998 0.95202 1.20923 0.91310 0.89643 0.95238 1.22539 0.97405 1.03205 1.00698 1.22178 0.84193 0.97472 0.94658 1.86622 1.23114 1.66315 1.60827 1.60459 1.51764 1.03325 1.13892 1.22435 0.98026 0.97379 0.89078 1.19169 0.82619 0.90311 0.90246 0.96672 1.86492 1.28231 1.66907 1.55516 1.22006 1.41725 1.04903 0.93834 0.92484 1.25902 0.94470 0.96569 1.00824 1.70220 1.39103 1.12129 1.32156 0.85632 0.78623 0.77453 0.79957 1.19256 1.21048 1.19319 1.21102 1.00953 0.90203 1.06028 1.18490 0.88783 0.86349 1.03011 1.86114 1.20353 1.28717 1.89282 1.23285 0.77030 1.05133 1.01974 0.91737 0.91622 0.86696 0.82456 0.83968 0.90406 0.90956 0.90540 0.93312 0.91369 0.95294 0.92473 0.77003 0.84951 0.95755 0.92291 0.80567 0.93058 0.84028 0.92060 0.86405 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -7.24 10.28 -79.67 -0.82 -8.06 16 3 C 0.08 1.69 6.70 22.57 0.15 1.85 16 4 C -0.17 -3.01 9.04 22.35 0.20 -2.81 16 5 C -0.11 -2.11 7.87 22.27 0.18 -1.93 16 6 C -0.07 -1.57 4.01 -19.86 -0.08 -1.65 16 7 C -0.05 -1.30 4.61 29.85 0.14 -1.16 16 8 C 0.12 3.27 0.52 3.53 0.00 3.27 16 9 C -0.18 -4.36 7.63 71.98 0.55 -3.81 16 10 C 0.09 2.45 4.98 71.98 0.36 2.81 16 11 O -0.56 -15.28 12.96 -148.98 -1.93 -17.21 16 12 N -0.66 -23.35 5.72 -470.17 -2.69 -26.05 16 13 C 0.06 2.45 4.50 86.30 0.39 2.84 16 14 C 0.23 12.17 3.03 29.85 0.09 12.26 16 15 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 16 O -0.57 -30.87 12.60 -148.98 -1.88 -32.75 16 17 C -0.59 -32.49 8.76 25.60 0.22 -32.26 16 18 H 0.06 3.04 7.74 -2.91 -0.02 3.01 16 19 C 0.02 1.40 5.40 84.65 0.46 1.85 16 20 N -0.90 -54.53 12.84 21.45 0.28 -54.25 16 21 Si 0.96 43.58 29.54 68.60 2.03 45.61 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 C -0.16 -3.63 6.76 22.35 0.15 -3.47 16 26 C 0.08 1.88 6.70 22.57 0.15 2.03 16 27 O -0.33 -7.78 10.28 -79.61 -0.82 -8.60 16 28 C 0.02 0.31 9.81 113.37 1.11 1.42 16 29 H 0.06 0.60 7.66 -2.39 -0.02 0.58 16 30 H 0.07 0.60 7.66 -2.38 -0.02 0.58 16 31 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.16 1.90 6.30 -2.91 -0.02 1.89 16 33 H 0.14 2.17 8.02 -2.91 -0.02 2.15 16 34 H 0.08 1.75 8.08 -2.39 -0.02 1.73 16 35 H 0.07 2.01 7.76 -2.39 -0.02 1.99 16 36 H 0.08 1.62 6.17 -2.39 -0.01 1.61 16 37 H 0.05 1.32 6.40 -2.39 -0.02 1.31 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.03 0.83 6.68 -2.38 -0.02 0.81 16 40 H 0.06 1.33 5.84 -2.39 -0.01 1.32 16 41 H 0.38 6.97 9.12 -74.06 -0.68 6.30 16 42 H 0.33 11.75 8.72 -89.69 -0.78 10.96 16 43 H 0.02 0.98 6.30 -2.38 -0.02 0.96 16 44 H 0.06 2.43 6.42 -2.39 -0.02 2.41 16 45 H 0.35 17.45 9.04 -74.06 -0.67 16.79 16 46 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 47 H 0.14 2.96 6.28 -2.91 -0.02 2.95 16 48 H 0.06 0.85 7.67 -2.39 -0.02 0.83 16 49 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.06 0.86 7.65 -2.39 -0.02 0.84 16 Total: -1.00 -73.33 396.11 -1.79 -75.12 By element: Atomic # 1 Polarization: 44.77 SS G_CDS: -1.14 Total: 43.63 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: 5.18 Total: -17.45 kcal Atomic # 7 Polarization: -77.88 SS G_CDS: -2.42 Total: -80.30 kcal Atomic # 8 Polarization: -61.17 SS G_CDS: -5.44 Total: -66.62 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -73.33 -1.79 -75.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933446370.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.757 kcal (2) G-P(sol) polarization free energy of solvation -73.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds