Wall clock time and date at job start Tue Mar 31 2020 23:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 5 5 N 1.46899 * 109.47254 * 300.00134 * 4 2 1 6 6 C 1.46904 * 111.00029 * 179.97438 * 5 4 2 7 7 C 1.47201 * 109.47130 * 180.02562 * 6 5 4 8 8 N 5.80253 * 85.94227 * 84.24506 * 2 1 3 9 9 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 10 10 C 1.53037 * 109.46046 * 180.02562 * 9 2 1 11 11 C 1.53201 * 109.31127 * 178.59697 * 10 9 2 12 12 N 1.46921 * 108.76377 * 54.66142 * 11 10 9 13 13 C 1.34779 * 120.63332 * 126.36366 * 12 11 10 14 14 O 1.21284 * 119.99620 * 180.02562 * 13 12 11 15 15 C 1.50692 * 119.99963 * 0.02562 * 13 12 11 16 16 S 1.81002 * 109.47186 * 180.02562 * 15 13 12 17 17 C 1.76202 * 100.00128 * 180.02562 * 16 15 13 18 18 H 1.08006 * 119.99615 * 359.97438 * 17 16 15 19 19 C 1.38792 * 120.00128 * 179.97438 * 17 16 15 20 20 N 1.31636 * 119.99924 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00098 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47154 * 90.00121 * 21 19 17 23 23 H 1.48508 * 109.47146 * 210.00091 * 21 19 17 24 24 H 1.48503 * 109.47001 * 329.99849 * 21 19 17 25 25 C 1.46932 * 118.73592 * 306.37486 * 12 11 10 26 26 C 1.53043 * 109.46339 * 59.96767 * 9 2 1 27 27 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 32 32 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 33 33 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 35 35 H 1.00908 * 110.99847 * 56.04959 * 5 4 2 36 36 H 1.08995 * 109.47167 * 300.00240 * 6 5 4 37 37 H 1.09003 * 109.46442 * 60.00214 * 6 5 4 38 38 H 1.09005 * 109.45911 * 299.99767 * 9 2 1 39 39 H 1.08996 * 109.49850 * 298.55996 * 10 9 2 40 40 H 1.08997 * 109.49675 * 58.66461 * 10 9 2 41 41 H 1.08997 * 109.59941 * 294.86415 * 11 10 9 42 42 H 1.09004 * 109.58094 * 174.43573 * 11 10 9 43 43 H 1.08996 * 109.47350 * 300.00895 * 15 13 12 44 44 H 1.09005 * 109.46943 * 60.00571 * 15 13 12 45 45 H 0.96995 * 119.99725 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.58765 * 293.82873 * 25 12 11 47 47 H 1.09006 * 109.70332 * 173.46858 * 25 12 11 48 48 H 1.08999 * 109.50071 * 301.33691 * 26 9 2 49 49 H 1.08998 * 109.49523 * 61.43916 * 26 9 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.5504 -0.0288 2.4487 6 6 2.0209 -0.6953 3.6703 7 6 1.5114 0.0242 4.8491 8 7 1.1195 0.5804 5.7588 9 6 2.0401 -0.7211 -1.2492 10 6 3.5704 -0.7215 -1.2486 11 6 4.0774 -1.4747 -2.4826 12 7 3.4749 -0.8767 -3.6818 13 6 4.2485 -0.4572 -4.7026 14 8 3.7389 0.0352 -5.6870 15 6 5.7464 -0.5999 -4.6210 16 16 6.4979 0.0503 -6.1338 17 6 8.1997 -0.2352 -5.7773 18 1 8.4862 -0.6902 -4.8406 19 6 9.1719 0.1247 -6.7001 20 7 8.8226 0.6798 -7.8415 21 14 10.9760 -0.1786 -6.3225 22 1 11.3643 -1.5260 -6.8112 23 1 11.8036 0.8513 -7.0005 24 1 11.1943 -0.1021 -4.8556 25 6 2.0130 -0.7446 -3.7469 26 6 1.5292 0.0001 -2.4986 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 -0.7208 1.2495 34 1 1.6767 -1.7489 1.2492 35 1 0.5438 0.0412 2.4402 36 1 1.6572 -1.7226 3.6869 37 1 3.1108 -0.6954 3.6872 38 1 1.6766 -1.7488 -1.2491 39 1 3.9345 0.3055 -1.2741 40 1 3.9337 -1.2147 -0.3471 41 1 3.7905 -2.5240 -2.4139 42 1 5.1629 -1.3935 -2.5398 43 1 6.1183 -0.0416 -3.7619 44 1 6.0055 -1.6529 -4.5097 45 1 9.5021 0.9316 -8.4862 46 1 1.5578 -1.7344 -3.7814 47 1 1.7341 -0.1829 -4.6385 48 1 0.4394 0.0207 -2.4869 49 1 1.9127 1.0203 -2.5122 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101512983.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:56 Heat of formation + Delta-G solvation = -16.805971 kcal Electronic energy + Delta-G solvation = -27134.663286 eV Core-core repulsion = 23415.610704 eV Total energy + Delta-G solvation = -3719.052582 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.49457 -38.98567 -37.50259 -36.30095 -34.66290 -32.42865 -31.83204 -31.28493 -29.00666 -28.08582 -27.61472 -25.86785 -25.48317 -24.20947 -22.99813 -21.41496 -19.45066 -18.78695 -18.11714 -17.63867 -16.73397 -16.46595 -15.93050 -15.65810 -15.34183 -14.99107 -14.80559 -14.61259 -14.53090 -14.29379 -14.01958 -13.83994 -13.77503 -13.22243 -13.06782 -12.92786 -12.85853 -12.62164 -12.58372 -12.29619 -12.17251 -12.08643 -11.96777 -11.79754 -11.54265 -11.38989 -11.07114 -11.05508 -11.00060 -10.75654 -10.68462 -10.41576 -10.32736 -9.79903 -9.32037 -9.13847 -9.06706 -8.48130 -8.21802 -6.49786 -6.21556 -3.92067 2.14125 2.30563 2.96311 3.07874 3.21958 3.26183 3.30131 3.34324 3.61348 3.80745 4.19905 4.24723 4.37373 4.40108 4.60723 4.70192 4.75979 4.82069 4.92611 4.97571 5.05227 5.13333 5.13611 5.16904 5.19315 5.24191 5.42291 5.42819 5.49807 5.58179 5.63233 5.63617 5.70540 5.72224 5.74978 5.85391 5.89141 5.91764 5.99475 6.08426 6.08736 6.12391 6.22803 6.33014 6.63471 6.69449 7.06697 7.58578 7.60481 8.35038 8.59252 9.23674 10.85830 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015604 B = 0.002157 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.998461 B =12979.868041 C =14303.514218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.055 4.055 3 C -0.139 4.139 4 C 0.067 3.933 5 N -0.683 5.683 6 C 0.152 3.848 7 C 0.209 3.791 8 N -0.426 5.426 9 C -0.074 4.074 10 C -0.135 4.135 11 C 0.108 3.892 12 N -0.619 5.619 13 C 0.534 3.466 14 O -0.519 6.519 15 C -0.150 4.150 16 S -0.062 6.062 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.113 3.887 26 C -0.131 4.131 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.038 0.962 35 H 0.348 0.652 36 H 0.077 0.923 37 H 0.118 0.882 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.268 0.732 46 H 0.060 0.940 47 H 0.091 0.909 48 H 0.074 0.926 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.479 -6.648 20.552 27.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.056 4.056 3 C -0.196 4.196 4 C -0.062 4.062 5 N -0.317 5.317 6 C 0.021 3.979 7 C -0.110 4.110 8 N -0.103 5.103 9 C -0.093 4.093 10 C -0.173 4.173 11 C -0.016 4.016 12 N -0.355 5.355 13 C 0.322 3.678 14 O -0.393 6.393 15 C -0.300 4.300 16 S 0.165 5.835 17 C -0.683 4.683 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.744 3.256 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.010 4.010 26 C -0.169 4.169 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.056 0.944 35 H 0.168 0.832 36 H 0.095 0.905 37 H 0.136 0.864 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.110 0.890 48 H 0.093 0.907 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.246 -4.548 20.266 26.997 hybrid contribution 1.379 -1.833 1.112 2.549 sum -15.867 -6.381 21.378 27.377 Atomic orbital electron populations 1.21981 0.94769 1.01594 1.02298 1.20548 0.95352 0.96539 0.93133 1.21878 1.01290 0.94514 1.01898 1.22165 1.01077 0.94837 0.88089 1.60456 1.17410 1.53558 1.00290 1.19393 1.01933 0.94068 0.82530 1.29050 0.93640 0.93788 0.94553 1.81250 1.08723 1.08704 1.11660 1.21131 0.95274 0.99232 0.93656 1.22123 0.95449 1.02051 0.97647 1.21711 0.99144 0.96514 0.84194 1.48088 1.06378 1.62994 1.18058 1.20323 0.88807 0.76697 0.81925 1.90688 1.74881 1.42873 1.30877 1.23545 0.93856 1.05124 1.07522 1.85415 1.02470 1.79595 1.16046 1.22854 0.91389 1.47402 1.06636 0.90968 1.24991 0.99544 0.94579 0.94487 1.70020 1.34191 1.38744 1.07294 0.86177 0.82678 0.78151 0.78544 1.20288 1.20763 1.19694 1.21501 0.80133 1.00212 0.99165 1.22076 1.00714 1.00304 0.93775 0.92525 0.91758 0.92849 0.92381 0.92785 0.91770 0.89691 0.94380 0.83225 0.90502 0.86383 0.91083 0.90666 0.90693 0.91735 0.89305 0.89319 0.89372 0.92198 0.92168 0.89023 0.90745 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 7.79 37.16 0.29 -0.39 16 2 C -0.06 -0.28 0.39 -154.51 -0.06 -0.34 16 3 C -0.14 -0.93 7.61 37.16 0.28 -0.65 16 4 C 0.07 0.24 4.29 -3.83 -0.02 0.23 16 5 N -0.68 -2.60 5.69 -116.89 -0.66 -3.26 16 6 C 0.15 0.40 6.16 -6.61 -0.04 0.36 16 7 C 0.21 1.35 15.69 -20.76 -0.33 1.03 16 8 N -0.43 -4.28 18.54 42.15 0.78 -3.50 16 9 C -0.07 -0.46 1.51 -90.58 -0.14 -0.60 16 10 C -0.13 -0.97 4.65 -26.61 -0.12 -1.09 16 11 C 0.11 1.04 6.34 -3.71 -0.02 1.02 16 12 N -0.62 -8.25 2.97 -172.76 -0.51 -8.76 16 13 C 0.53 9.95 7.72 -10.99 -0.08 9.87 16 14 O -0.52 -11.75 15.28 5.55 0.08 -11.66 16 15 C -0.15 -2.99 4.50 36.00 0.16 -2.82 16 16 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 17 C -0.53 -15.06 9.50 30.94 0.29 -14.77 16 18 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 19 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 20 N -0.87 -26.01 13.22 55.49 0.73 -25.27 16 21 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 C 0.11 1.26 6.43 -3.71 -0.02 1.23 16 26 C -0.13 -1.07 4.65 -26.61 -0.12 -1.19 16 27 H 0.06 0.24 6.57 -51.93 -0.34 -0.10 16 28 H 0.06 0.34 6.40 -51.93 -0.33 0.00 16 29 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.43 6.46 -51.93 -0.34 0.10 16 31 H 0.05 0.41 6.46 -51.93 -0.34 0.08 16 32 H 0.06 0.45 7.60 -51.93 -0.39 0.06 16 33 H 0.08 0.32 6.40 -51.93 -0.33 -0.01 16 34 H 0.04 0.11 8.14 -51.93 -0.42 -0.31 16 35 H 0.35 1.25 6.75 -39.29 -0.27 0.98 16 36 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 37 H 0.12 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.66 6.51 -51.93 -0.34 0.32 16 40 H 0.07 0.39 6.36 -51.93 -0.33 0.06 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.92 5.93 -51.93 -0.31 0.61 16 43 H 0.09 1.63 7.69 -51.92 -0.40 1.23 16 44 H 0.09 1.62 7.94 -51.91 -0.41 1.21 16 45 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.09 1.23 7.01 -51.93 -0.36 0.87 16 48 H 0.07 0.50 6.36 -51.93 -0.33 0.17 16 49 H 0.07 0.71 6.51 -51.93 -0.34 0.37 16 LS Contribution 393.95 15.07 5.94 5.94 Total: -1.00 -35.67 393.95 -8.57 -44.23 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -7.66 Total: -3.87 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -0.03 Total: -6.13 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.34 Total: -40.80 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.08 Total: -11.66 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.67 -8.57 -44.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101512983.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.429 kcal (2) G-P(sol) polarization free energy of solvation -35.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds