Wall clock time and date at job start Tue Mar 31 2020 23:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 5 5 N 1.46899 * 109.47254 * 300.00134 * 4 2 1 6 6 C 1.46904 * 111.00029 * 179.97438 * 5 4 2 7 7 C 1.47201 * 109.47130 * 180.02562 * 6 5 4 8 8 N 5.80253 * 85.94227 * 84.24506 * 2 1 3 9 9 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 10 10 C 1.53037 * 109.46046 * 180.02562 * 9 2 1 11 11 C 1.53201 * 109.31127 * 178.59697 * 10 9 2 12 12 N 1.46921 * 108.76377 * 54.66142 * 11 10 9 13 13 C 1.34779 * 120.63332 * 126.36366 * 12 11 10 14 14 O 1.21284 * 119.99620 * 180.02562 * 13 12 11 15 15 C 1.50692 * 119.99963 * 0.02562 * 13 12 11 16 16 S 1.81002 * 109.47186 * 180.02562 * 15 13 12 17 17 C 1.76202 * 100.00128 * 180.02562 * 16 15 13 18 18 H 1.08006 * 119.99615 * 359.97438 * 17 16 15 19 19 C 1.38792 * 120.00128 * 179.97438 * 17 16 15 20 20 N 1.31636 * 119.99924 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00098 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47154 * 90.00121 * 21 19 17 23 23 H 1.48508 * 109.47146 * 210.00091 * 21 19 17 24 24 H 1.48503 * 109.47001 * 329.99849 * 21 19 17 25 25 C 1.46932 * 118.73592 * 306.37486 * 12 11 10 26 26 C 1.53043 * 109.46339 * 59.96767 * 9 2 1 27 27 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 32 32 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 33 33 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 35 35 H 1.00908 * 110.99847 * 56.04959 * 5 4 2 36 36 H 1.08995 * 109.47167 * 300.00240 * 6 5 4 37 37 H 1.09003 * 109.46442 * 60.00214 * 6 5 4 38 38 H 1.09005 * 109.45911 * 299.99767 * 9 2 1 39 39 H 1.08996 * 109.49850 * 298.55996 * 10 9 2 40 40 H 1.08997 * 109.49675 * 58.66461 * 10 9 2 41 41 H 1.08997 * 109.59941 * 294.86415 * 11 10 9 42 42 H 1.09004 * 109.58094 * 174.43573 * 11 10 9 43 43 H 1.08996 * 109.47350 * 300.00895 * 15 13 12 44 44 H 1.09005 * 109.46943 * 60.00571 * 15 13 12 45 45 H 0.96995 * 119.99725 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.58765 * 293.82873 * 25 12 11 47 47 H 1.09006 * 109.70332 * 173.46858 * 25 12 11 48 48 H 1.08999 * 109.50071 * 301.33691 * 26 9 2 49 49 H 1.08998 * 109.49523 * 61.43916 * 26 9 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.5504 -0.0288 2.4487 6 6 2.0209 -0.6953 3.6703 7 6 1.5114 0.0242 4.8491 8 7 1.1195 0.5804 5.7588 9 6 2.0401 -0.7211 -1.2492 10 6 3.5704 -0.7215 -1.2486 11 6 4.0774 -1.4747 -2.4826 12 7 3.4749 -0.8767 -3.6818 13 6 4.2485 -0.4572 -4.7026 14 8 3.7389 0.0352 -5.6870 15 6 5.7464 -0.5999 -4.6210 16 16 6.4979 0.0503 -6.1338 17 6 8.1997 -0.2352 -5.7773 18 1 8.4862 -0.6902 -4.8406 19 6 9.1719 0.1247 -6.7001 20 7 8.8226 0.6798 -7.8415 21 14 10.9760 -0.1786 -6.3225 22 1 11.3643 -1.5260 -6.8112 23 1 11.8036 0.8513 -7.0005 24 1 11.1943 -0.1021 -4.8556 25 6 2.0130 -0.7446 -3.7469 26 6 1.5292 0.0001 -2.4986 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 -0.7208 1.2495 34 1 1.6767 -1.7489 1.2492 35 1 0.5438 0.0412 2.4402 36 1 1.6572 -1.7226 3.6869 37 1 3.1108 -0.6954 3.6872 38 1 1.6766 -1.7488 -1.2491 39 1 3.9345 0.3055 -1.2741 40 1 3.9337 -1.2147 -0.3471 41 1 3.7905 -2.5240 -2.4139 42 1 5.1629 -1.3935 -2.5398 43 1 6.1183 -0.0416 -3.7619 44 1 6.0055 -1.6529 -4.5097 45 1 9.5021 0.9316 -8.4862 46 1 1.5578 -1.7344 -3.7814 47 1 1.7341 -0.1829 -4.6385 48 1 0.4394 0.0207 -2.4869 49 1 1.9127 1.0203 -2.5122 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101512983.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:56 Heat of formation + Delta-G solvation = -40.910635 kcal Electronic energy + Delta-G solvation = -27135.708543 eV Core-core repulsion = 23415.610704 eV Total energy + Delta-G solvation = -3720.097838 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.35487 -39.90922 -38.10837 -37.11345 -35.28601 -34.56860 -32.77141 -32.02639 -30.28292 -28.50840 -28.07579 -27.65915 -26.45816 -24.85970 -23.69717 -22.21297 -20.45554 -19.67817 -19.27119 -18.56698 -17.97725 -16.91379 -16.84687 -16.79095 -16.54509 -16.32206 -15.84608 -15.45931 -15.13697 -15.02016 -14.95919 -14.87108 -14.48482 -14.31634 -14.06920 -13.95207 -13.59328 -13.43935 -13.37448 -13.18661 -13.13509 -12.88839 -12.84381 -12.73308 -12.58694 -12.48007 -12.44500 -12.15194 -11.87237 -11.71141 -11.63846 -11.20946 -11.12762 -11.06005 -10.89101 -10.72099 -10.23324 -9.57778 -9.32922 -8.65713 -8.32944 -6.11324 1.28137 1.43835 1.48294 1.58381 1.62693 1.69541 1.85044 2.18495 2.29410 3.00793 3.01139 3.28590 3.51583 3.69221 3.81367 3.90394 3.92350 4.18916 4.27144 4.28794 4.31119 4.44285 4.44964 4.47535 4.53635 4.60965 4.64112 4.68830 4.85924 4.88071 4.91662 4.97975 5.02021 5.06832 5.08376 5.17760 5.24063 5.25482 5.32750 5.43113 5.43352 5.52255 5.62122 5.72565 5.76435 5.99691 6.21332 6.37693 6.41234 6.63442 7.08143 7.20965 8.76262 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015604 B = 0.002157 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.998461 B =12979.868041 C =14303.514218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.047 4.047 3 C -0.136 4.136 4 C 0.071 3.929 5 N -0.697 5.697 6 C 0.155 3.845 7 C 0.238 3.762 8 N -0.499 5.499 9 C -0.067 4.067 10 C -0.129 4.129 11 C 0.097 3.903 12 N -0.604 5.604 13 C 0.529 3.471 14 O -0.573 6.573 15 C -0.121 4.121 16 S -0.157 6.157 17 C -0.543 4.543 18 H 0.084 0.916 19 C 0.012 3.988 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.267 1.267 23 H -0.279 1.279 24 H -0.256 1.256 25 C 0.108 3.892 26 C -0.123 4.123 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.037 0.963 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.349 0.651 36 H 0.109 0.891 37 H 0.137 0.863 38 H 0.092 0.908 39 H 0.056 0.944 40 H 0.108 0.892 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.271 0.729 46 H 0.085 0.915 47 H 0.060 0.940 48 H 0.092 0.908 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.132 -9.310 23.376 29.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.048 4.048 3 C -0.193 4.193 4 C -0.057 4.057 5 N -0.332 5.332 6 C 0.024 3.976 7 C -0.080 4.080 8 N -0.178 5.178 9 C -0.086 4.086 10 C -0.167 4.167 11 C -0.025 4.025 12 N -0.338 5.338 13 C 0.317 3.683 14 O -0.452 6.452 15 C -0.272 4.272 16 S 0.071 5.929 17 C -0.691 4.691 18 H 0.102 0.898 19 C -0.193 4.193 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.193 1.193 23 H -0.205 1.205 24 H -0.180 1.180 25 C -0.014 4.014 26 C -0.161 4.161 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.169 0.831 36 H 0.127 0.873 37 H 0.155 0.845 38 H 0.110 0.890 39 H 0.075 0.925 40 H 0.126 0.874 41 H 0.111 0.889 42 H 0.101 0.899 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.079 0.921 46 H 0.103 0.897 47 H 0.078 0.922 48 H 0.110 0.890 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.925 -7.238 23.151 29.577 hybrid contribution 1.146 -1.031 0.281 1.566 sum -15.779 -8.268 23.432 29.435 Atomic orbital electron populations 1.21965 0.94230 1.02362 1.01975 1.20448 0.95677 0.95143 0.93517 1.21841 1.00689 0.95956 1.00848 1.22111 1.01258 0.95446 0.86867 1.60400 1.17659 1.54361 1.00737 1.19695 1.02855 0.94676 0.80374 1.29803 0.91734 0.92220 0.94252 1.81277 1.11253 1.11132 1.14100 1.21104 0.94529 1.00095 0.92853 1.22117 0.96069 1.00968 0.97543 1.22097 0.98868 0.98168 0.83325 1.48134 1.07113 1.60976 1.17606 1.20150 0.88538 0.77009 0.82616 1.90668 1.75441 1.45765 1.33313 1.23352 0.94585 1.05737 1.03549 1.85624 1.04197 1.81077 1.22029 1.23188 0.91405 1.47370 1.07164 0.89811 1.26146 1.05049 0.93984 0.94087 1.70194 1.35974 1.40058 1.08609 0.84949 0.75685 0.78230 0.79094 1.19261 1.20457 1.18014 1.21704 0.78673 1.01529 0.99488 1.22021 1.01704 0.98920 0.93443 0.92254 0.92822 0.91461 0.93189 0.94408 0.92234 0.89297 0.92251 0.83129 0.87330 0.84539 0.88953 0.92524 0.87429 0.88904 0.89894 0.87651 0.87463 0.92055 0.89688 0.92167 0.88992 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 7.79 71.98 0.56 -0.34 16 2 C -0.05 -0.32 0.39 -52.18 -0.02 -0.34 16 3 C -0.14 -1.65 7.61 71.98 0.55 -1.11 16 4 C 0.07 0.19 4.29 86.30 0.37 0.56 16 5 N -0.70 -2.83 5.69 -523.72 -2.98 -5.81 16 6 C 0.15 0.22 6.16 84.50 0.52 0.74 16 7 C 0.24 2.64 15.69 89.44 1.40 4.04 16 8 N -0.50 -9.83 18.54 20.01 0.37 -9.46 16 9 C -0.07 -0.59 1.51 -10.77 -0.02 -0.61 16 10 C -0.13 -1.40 4.65 30.67 0.14 -1.26 16 11 C 0.10 1.57 6.34 86.37 0.55 2.12 16 12 N -0.60 -15.40 2.97 -818.87 -2.43 -17.83 16 13 C 0.53 19.99 7.72 87.65 0.68 20.67 16 14 O -0.57 -27.26 15.28 -3.04 -0.05 -27.31 16 15 C -0.12 -4.83 4.50 71.23 0.32 -4.51 16 16 S -0.16 -8.75 20.57 -56.49 -1.16 -9.91 16 17 C -0.54 -30.87 9.50 67.95 0.65 -30.23 16 18 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 19 C 0.01 0.68 5.49 84.85 0.47 1.14 16 20 N -0.91 -56.09 13.22 21.65 0.29 -55.80 16 21 Si 1.00 43.22 29.55 68.60 2.03 45.24 16 22 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 23 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 25 C 0.11 2.30 6.43 86.36 0.56 2.85 16 26 C -0.12 -1.81 4.65 30.67 0.14 -1.67 16 27 H 0.06 0.35 6.57 -2.39 -0.02 0.33 16 28 H 0.05 0.45 6.40 -2.39 -0.02 0.43 16 29 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.05 0.68 6.46 -2.39 -0.02 0.67 16 31 H 0.04 0.57 6.46 -2.39 -0.02 0.55 16 32 H 0.06 0.78 7.60 -2.39 -0.02 0.76 16 33 H 0.09 0.21 6.40 -2.39 -0.02 0.19 16 34 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 35 H 0.35 1.39 6.75 -89.69 -0.61 0.78 16 36 H 0.11 -0.43 8.14 -2.39 -0.02 -0.45 16 37 H 0.14 -0.22 8.14 -2.39 -0.02 -0.24 16 38 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 39 H 0.06 0.87 6.51 -2.39 -0.02 0.85 16 40 H 0.11 0.55 6.36 -2.39 -0.02 0.53 16 41 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.08 1.47 5.93 -2.39 -0.01 1.45 16 43 H 0.11 3.81 7.69 -2.40 -0.02 3.79 16 44 H 0.11 3.83 7.94 -2.39 -0.02 3.81 16 45 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 46 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.06 1.69 7.01 -2.38 -0.02 1.67 16 48 H 0.09 1.06 6.36 -2.39 -0.02 1.05 16 49 H 0.05 0.99 6.51 -2.39 -0.02 0.98 16 Total: -1.00 -83.87 393.95 3.29 -80.58 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 0.36 Total: 8.23 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 6.86 Total: -7.93 kcal Atomic # 7 Polarization: -84.15 SS G_CDS: -4.75 Total: -88.90 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.05 Total: -27.31 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.16 Total: -9.91 kcal Total: -83.87 3.29 -80.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101512983.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.670 kcal (2) G-P(sol) polarization free energy of solvation -83.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds