Wall clock time and date at job start Tue Mar 31 2020 23:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.50698 * 119.99857 * 2 1 4 4 C 1.33110 * 120.00403 * 180.02562 * 2 1 3 5 5 F 1.35097 * 120.00302 * 179.97438 * 4 2 1 6 6 C 1.47297 * 119.99742 * 359.97438 * 4 2 1 7 7 O 1.21606 * 120.00455 * 0.02562 * 6 4 2 8 8 N 1.34780 * 119.99944 * 179.97438 * 6 4 2 9 9 C 1.46500 * 119.99907 * 180.02562 * 8 6 4 10 10 H 1.08997 * 110.55252 * 34.21043 * 9 8 6 11 11 C 1.54837 * 110.61287 * 157.07733 * 9 8 6 12 12 C 1.55853 * 103.51763 * 118.50680 * 11 9 8 13 13 H 1.08997 * 115.57865 * 158.88958 * 12 11 9 14 14 C 1.55847 * 105.03035 * 288.27281 * 12 11 9 15 15 C 1.55516 * 103.46705 * 71.80998 * 14 12 11 16 16 C 1.55849 * 103.45431 * 359.87793 * 15 14 12 17 17 H 1.08997 * 116.14874 * 159.41868 * 16 15 14 18 18 N 1.50648 * 101.02755 * 32.99324 * 12 11 9 19 19 C 1.46898 * 111.00288 * 62.35036 * 18 12 11 20 20 C 1.50694 * 109.47395 * 185.44471 * 19 18 12 21 21 O 1.21296 * 120.00022 * 354.41564 * 20 19 18 22 22 N 1.34780 * 119.99892 * 174.41101 * 20 19 18 23 23 C 1.37108 * 119.99802 * 179.97438 * 22 20 19 24 24 H 1.08004 * 119.99909 * 0.02562 * 23 22 20 25 25 C 1.38948 * 119.99852 * 180.02562 * 23 22 20 26 26 N 1.31413 * 120.00208 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 119.99892 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47334 * 359.97438 * 27 25 23 29 29 H 1.48499 * 109.47459 * 119.99685 * 27 25 23 30 30 H 1.48499 * 109.47038 * 239.99856 * 27 25 23 31 31 H 1.09003 * 109.47703 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.47393 * 119.99676 * 1 2 3 33 33 H 1.09002 * 109.46929 * 239.99699 * 1 2 3 34 34 H 1.09006 * 109.47249 * 90.00159 * 3 2 1 35 35 H 1.08996 * 109.47743 * 209.99977 * 3 2 1 36 36 H 1.09003 * 109.47333 * 330.00615 * 3 2 1 37 37 H 0.96995 * 120.00037 * 359.97438 * 8 6 4 38 38 H 1.08998 * 110.61423 * 237.01197 * 11 9 8 39 39 H 1.08997 * 110.61132 * 359.97438 * 11 9 8 40 40 H 1.09004 * 110.61003 * 190.23977 * 14 12 11 41 41 H 1.08999 * 110.61304 * 313.21451 * 14 12 11 42 42 H 1.08997 * 110.48278 * 241.46580 * 15 14 12 43 43 H 1.09005 * 110.80641 * 118.44034 * 15 14 12 44 44 H 1.09001 * 109.46908 * 305.44343 * 19 18 12 45 45 H 1.08997 * 109.47513 * 65.44193 * 19 18 12 46 46 H 0.96988 * 120.00385 * 0.02562 * 22 20 19 47 47 H 0.96994 * 120.00314 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1726 -1.1527 -0.0005 5 9 3.5235 -1.1527 -0.0010 6 6 1.4361 -2.4284 -0.0005 7 8 0.2200 -2.4285 -0.0005 8 7 2.1101 -3.5956 -0.0016 9 6 1.3776 -4.8643 -0.0021 10 1 0.4551 -4.7733 -0.5755 11 6 2.2608 -6.0034 -0.5677 12 6 2.3767 -7.0006 0.6244 13 1 2.6434 -8.0234 0.3582 14 6 3.3091 -6.2934 1.6537 15 6 2.4202 -5.1510 2.2224 16 6 1.0741 -5.3233 1.4561 17 1 0.1967 -4.8715 1.9188 18 7 1.0332 -6.8212 1.2819 19 6 -0.0535 -7.2133 0.3746 20 6 -1.3807 -6.8959 1.0138 21 8 -1.4220 -6.4873 2.1551 22 7 -2.5220 -7.0660 0.3172 23 6 -3.7296 -6.7777 0.8989 24 1 -3.7663 -6.4139 1.9152 25 6 -4.9062 -6.9535 0.1810 26 7 -4.8615 -7.3966 -1.0554 27 14 -6.5514 -6.5601 0.9733 28 1 -6.3304 -6.0815 2.3616 29 1 -7.2387 -5.5032 0.1885 30 1 -7.3931 -7.7832 0.9998 31 1 -0.3634 1.0277 0.0005 32 1 -0.3634 -0.5138 -0.8900 33 1 -0.3633 -0.5139 0.8900 34 1 2.4421 1.6198 1.0277 35 1 3.2128 1.1749 -0.5138 36 1 1.6713 2.0648 -0.5137 37 1 3.0800 -3.5956 -0.0027 38 1 1.7749 -6.4788 -1.4197 39 1 3.2434 -5.6239 -0.8480 40 1 3.5993 -6.9835 2.4460 41 1 4.1896 -5.8858 1.1571 42 1 2.8634 -4.1791 2.0058 43 1 2.2698 -5.2749 3.2949 44 1 0.0393 -6.6639 -0.5622 45 1 0.0074 -8.2833 0.1758 46 1 -2.4891 -7.3930 -0.5953 47 1 -5.6828 -7.5190 -1.5567 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109153255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:40 Heat of formation + Delta-G solvation = -68.605802 kcal Electronic energy + Delta-G solvation = -30838.156140 eV Core-core repulsion = 26550.644173 eV Total energy + Delta-G solvation = -4287.511967 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.06826 -41.24717 -39.39491 -37.77189 -35.61096 -34.22353 -33.82853 -31.90587 -31.06169 -29.88073 -29.17093 -28.06248 -27.19685 -26.38767 -24.12385 -22.66696 -21.72721 -20.25196 -19.78855 -19.16633 -18.80862 -18.12870 -17.75536 -16.58776 -16.28213 -16.01667 -15.82244 -15.47727 -15.40050 -14.77100 -14.43265 -14.25638 -14.03501 -13.78583 -13.70850 -13.24667 -13.14378 -12.89208 -12.78424 -12.55427 -12.50469 -12.47001 -12.15250 -11.91274 -11.84407 -11.76809 -11.65883 -11.43388 -11.27035 -11.05146 -10.81140 -10.63276 -10.29294 -10.16336 -10.15345 -9.78564 -9.44582 -9.35355 -9.01043 -8.38275 -8.03140 -7.88666 -6.35611 -3.75683 0.96252 2.89142 2.95947 3.20965 3.30981 3.38695 3.92963 3.97583 4.08344 4.25939 4.41678 4.54432 4.59819 4.63242 4.82454 4.96216 5.02542 5.16425 5.17925 5.21118 5.23589 5.32497 5.38955 5.44151 5.46912 5.53044 5.59579 5.72398 5.75623 5.79229 5.80014 5.91717 5.94416 6.01176 6.03436 6.17702 6.23987 6.32334 6.33964 6.42817 6.52571 6.88366 7.21261 7.36175 7.61624 8.03521 8.12889 8.68232 9.24818 9.61093 10.13046 10.82463 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010191 B = 0.003668 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.949496 B = 7631.704027 C = 9689.694417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.069 4.069 3 C -0.125 4.125 4 C -0.030 4.030 5 F -0.141 7.141 6 C 0.541 3.459 7 O -0.505 6.505 8 N -0.708 5.708 9 C 0.108 3.892 10 H 0.098 0.902 11 C -0.161 4.161 12 C 0.041 3.959 13 H 0.116 0.884 14 C -0.112 4.112 15 C -0.117 4.117 16 C 0.054 3.946 17 H 0.130 0.870 18 N -0.462 5.462 19 C 0.020 3.980 20 C 0.446 3.554 21 O -0.577 6.577 22 N -0.564 5.564 23 C -0.295 4.295 24 H 0.103 0.897 25 C 0.021 3.979 26 N -0.903 5.903 27 Si 0.928 3.072 28 H -0.268 1.268 29 H -0.282 1.282 30 H -0.282 1.282 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.401 0.599 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.055 0.945 45 H 0.090 0.910 46 H 0.391 0.609 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.313 10.535 -2.173 22.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.072 4.072 3 C -0.182 4.182 4 C -0.053 4.053 5 F -0.120 7.120 6 C 0.328 3.672 7 O -0.381 6.381 8 N -0.360 5.360 9 C 0.002 3.998 10 H 0.116 0.884 11 C -0.200 4.200 12 C -0.068 4.068 13 H 0.134 0.866 14 C -0.150 4.150 15 C -0.155 4.155 16 C -0.055 4.055 17 H 0.148 0.852 18 N -0.184 5.184 19 C -0.112 4.112 20 C 0.231 3.769 21 O -0.461 6.461 22 N -0.201 5.201 23 C -0.424 4.424 24 H 0.121 0.879 25 C -0.180 4.180 26 N -0.545 5.545 27 Si 0.755 3.245 28 H -0.192 1.192 29 H -0.208 1.208 30 H -0.208 1.208 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.236 0.764 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.073 0.927 45 H 0.108 0.892 46 H 0.224 0.776 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 18.168 10.379 -0.990 20.947 hybrid contribution -0.010 0.320 -1.231 1.272 sum 18.158 10.698 -2.221 21.192 Atomic orbital electron populations 1.20971 0.88552 1.01969 1.05068 1.22779 0.98234 0.93594 0.92582 1.20940 1.00187 0.93732 1.03302 1.19416 0.76918 0.94557 1.14373 1.91434 1.28810 1.97136 1.94659 1.18236 0.87645 0.83477 0.77881 1.90928 1.12189 1.86468 1.48559 1.45876 1.10068 1.05292 1.74743 1.22904 0.95595 0.82001 0.99262 0.88384 1.23540 1.00269 0.96593 0.99628 1.24529 0.91853 0.98218 0.92171 0.86596 1.22690 0.96522 0.97529 0.98248 1.22685 0.94659 0.97636 1.00491 1.24872 0.98851 0.88336 0.93477 0.85207 1.67592 0.99744 1.13171 1.37934 1.22179 0.92279 1.01756 0.94995 1.19661 0.84695 0.84941 0.87599 1.90515 1.86814 1.50430 1.18346 1.41854 1.04963 1.58201 1.15102 1.19740 0.82178 1.40727 0.99792 0.87919 1.25237 0.99784 0.97337 0.95611 1.69618 1.29088 1.46368 1.09402 0.85820 0.81367 0.77940 0.79347 1.19225 1.20795 1.20815 0.92088 0.89372 0.89226 0.89924 0.90901 0.90374 0.76403 0.90169 0.90465 0.91003 0.91736 0.91673 0.90954 0.92722 0.89161 0.77600 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 8.33 36.00 0.30 -0.92 16 2 C -0.07 -0.72 6.12 -101.14 -0.62 -1.34 16 3 C -0.13 -0.92 9.78 36.00 0.35 -0.57 16 4 C -0.03 -0.36 7.37 -37.68 -0.28 -0.63 16 5 F -0.14 -1.52 15.81 2.25 0.04 -1.48 16 6 C 0.54 7.62 7.74 -12.58 -0.10 7.52 16 7 O -0.50 -8.91 12.76 5.27 0.07 -8.84 16 8 N -0.71 -8.67 3.68 -52.51 -0.19 -8.86 16 9 C 0.11 1.53 2.30 -65.44 -0.15 1.38 16 10 H 0.10 1.70 6.74 -51.93 -0.35 1.35 16 11 C -0.16 -1.78 5.39 -24.24 -0.13 -1.92 16 12 C 0.04 0.49 4.96 -62.56 -0.31 0.18 16 13 H 0.12 1.20 8.14 -51.93 -0.42 0.77 16 14 C -0.11 -1.20 6.46 -23.87 -0.15 -1.36 16 15 C -0.12 -1.53 6.35 -23.87 -0.15 -1.68 16 16 C 0.05 0.90 4.10 -62.44 -0.26 0.64 16 17 H 0.13 2.76 6.85 -51.93 -0.36 2.40 16 18 N -0.46 -7.71 5.32 -206.84 -1.10 -8.81 16 19 C 0.02 0.36 5.17 -4.98 -0.03 0.33 16 20 C 0.45 10.81 7.46 -10.99 -0.08 10.73 16 21 O -0.58 -16.01 14.41 5.54 0.08 -15.93 16 22 N -0.56 -14.70 5.29 -10.96 -0.06 -14.76 16 23 C -0.29 -8.44 9.68 -14.93 -0.14 -8.58 16 24 H 0.10 3.10 7.16 -52.48 -0.38 2.72 16 25 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 26 N -0.90 -25.12 13.05 55.50 0.72 -24.39 16 27 Si 0.93 21.64 29.55 -169.99 -5.02 16.62 16 28 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 29 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 30 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 31 H 0.06 0.53 7.94 -51.93 -0.41 0.11 16 32 H 0.09 1.12 7.22 -51.93 -0.38 0.75 16 33 H 0.09 1.17 7.22 -51.93 -0.38 0.80 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.52 7.55 -51.93 -0.39 0.13 16 36 H 0.08 0.46 8.05 -51.93 -0.42 0.04 16 37 H 0.40 3.90 7.50 -40.82 -0.31 3.59 16 38 H 0.08 0.88 7.29 -51.93 -0.38 0.50 16 39 H 0.08 0.68 7.37 -51.93 -0.38 0.30 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.55 7.82 -51.93 -0.41 0.14 16 42 H 0.06 0.76 6.42 -51.93 -0.33 0.43 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.05 0.91 4.86 -51.93 -0.25 0.66 16 45 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 46 H 0.39 9.76 7.90 -40.82 -0.32 9.44 16 47 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 374.79 15.07 5.65 5.65 Total: -1.00 -33.16 374.79 -8.35 -41.50 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -6.68 Total: 15.03 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -1.84 Total: 4.29 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.63 Total: -56.83 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: 0.15 Total: -24.78 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.16 -8.35 -41.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109153255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.103 kcal (2) G-P(sol) polarization free energy of solvation -33.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds