Wall clock time and date at job start Tue Mar 31 2020 23:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.50698 * 119.99857 * 2 1 4 4 C 1.33110 * 120.00403 * 180.02562 * 2 1 3 5 5 F 1.35097 * 120.00302 * 179.97438 * 4 2 1 6 6 C 1.47297 * 119.99742 * 359.97438 * 4 2 1 7 7 O 1.21606 * 120.00455 * 0.02562 * 6 4 2 8 8 N 1.34780 * 119.99944 * 179.97438 * 6 4 2 9 9 C 1.46500 * 119.99907 * 180.02562 * 8 6 4 10 10 H 1.08997 * 110.55252 * 34.21043 * 9 8 6 11 11 C 1.54837 * 110.61287 * 157.07733 * 9 8 6 12 12 C 1.55853 * 103.51763 * 118.50680 * 11 9 8 13 13 H 1.08997 * 115.57865 * 158.88958 * 12 11 9 14 14 C 1.55847 * 105.03035 * 288.27281 * 12 11 9 15 15 C 1.55516 * 103.46705 * 71.80998 * 14 12 11 16 16 C 1.55849 * 103.45431 * 359.87793 * 15 14 12 17 17 H 1.08997 * 116.14874 * 159.41868 * 16 15 14 18 18 N 1.50648 * 101.02755 * 32.99324 * 12 11 9 19 19 C 1.46898 * 111.00288 * 62.35036 * 18 12 11 20 20 C 1.50694 * 109.47395 * 185.44471 * 19 18 12 21 21 O 1.21296 * 120.00022 * 354.41564 * 20 19 18 22 22 N 1.34780 * 119.99892 * 174.41101 * 20 19 18 23 23 C 1.37108 * 119.99802 * 179.97438 * 22 20 19 24 24 H 1.08004 * 119.99909 * 0.02562 * 23 22 20 25 25 C 1.38948 * 119.99852 * 180.02562 * 23 22 20 26 26 N 1.31413 * 120.00208 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 119.99892 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47334 * 359.97438 * 27 25 23 29 29 H 1.48499 * 109.47459 * 119.99685 * 27 25 23 30 30 H 1.48499 * 109.47038 * 239.99856 * 27 25 23 31 31 H 1.09003 * 109.47703 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.47393 * 119.99676 * 1 2 3 33 33 H 1.09002 * 109.46929 * 239.99699 * 1 2 3 34 34 H 1.09006 * 109.47249 * 90.00159 * 3 2 1 35 35 H 1.08996 * 109.47743 * 209.99977 * 3 2 1 36 36 H 1.09003 * 109.47333 * 330.00615 * 3 2 1 37 37 H 0.96995 * 120.00037 * 359.97438 * 8 6 4 38 38 H 1.08998 * 110.61423 * 237.01197 * 11 9 8 39 39 H 1.08997 * 110.61132 * 359.97438 * 11 9 8 40 40 H 1.09004 * 110.61003 * 190.23977 * 14 12 11 41 41 H 1.08999 * 110.61304 * 313.21451 * 14 12 11 42 42 H 1.08997 * 110.48278 * 241.46580 * 15 14 12 43 43 H 1.09005 * 110.80641 * 118.44034 * 15 14 12 44 44 H 1.09001 * 109.46908 * 305.44343 * 19 18 12 45 45 H 1.08997 * 109.47513 * 65.44193 * 19 18 12 46 46 H 0.96988 * 120.00385 * 0.02562 * 22 20 19 47 47 H 0.96994 * 120.00314 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1726 -1.1527 -0.0005 5 9 3.5235 -1.1527 -0.0010 6 6 1.4361 -2.4284 -0.0005 7 8 0.2200 -2.4285 -0.0005 8 7 2.1101 -3.5956 -0.0016 9 6 1.3776 -4.8643 -0.0021 10 1 0.4551 -4.7733 -0.5755 11 6 2.2608 -6.0034 -0.5677 12 6 2.3767 -7.0006 0.6244 13 1 2.6434 -8.0234 0.3582 14 6 3.3091 -6.2934 1.6537 15 6 2.4202 -5.1510 2.2224 16 6 1.0741 -5.3233 1.4561 17 1 0.1967 -4.8715 1.9188 18 7 1.0332 -6.8212 1.2819 19 6 -0.0535 -7.2133 0.3746 20 6 -1.3807 -6.8959 1.0138 21 8 -1.4220 -6.4873 2.1551 22 7 -2.5220 -7.0660 0.3172 23 6 -3.7296 -6.7777 0.8989 24 1 -3.7663 -6.4139 1.9152 25 6 -4.9062 -6.9535 0.1810 26 7 -4.8615 -7.3966 -1.0554 27 14 -6.5514 -6.5601 0.9733 28 1 -6.3304 -6.0815 2.3616 29 1 -7.2387 -5.5032 0.1885 30 1 -7.3931 -7.7832 0.9998 31 1 -0.3634 1.0277 0.0005 32 1 -0.3634 -0.5138 -0.8900 33 1 -0.3633 -0.5139 0.8900 34 1 2.4421 1.6198 1.0277 35 1 3.2128 1.1749 -0.5138 36 1 1.6713 2.0648 -0.5137 37 1 3.0800 -3.5956 -0.0027 38 1 1.7749 -6.4788 -1.4197 39 1 3.2434 -5.6239 -0.8480 40 1 3.5993 -6.9835 2.4460 41 1 4.1896 -5.8858 1.1571 42 1 2.8634 -4.1791 2.0058 43 1 2.2698 -5.2749 3.2949 44 1 0.0393 -6.6639 -0.5622 45 1 0.0074 -8.2833 0.1758 46 1 -2.4891 -7.3930 -0.5953 47 1 -5.6828 -7.5190 -1.5567 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109153255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:40 Heat of formation + Delta-G solvation = -93.472171 kcal Electronic energy + Delta-G solvation = -30839.234426 eV Core-core repulsion = 26550.644173 eV Total energy + Delta-G solvation = -4288.590254 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.92957 -42.41388 -40.59399 -39.67950 -36.51917 -35.99393 -35.30615 -33.45418 -32.90822 -30.94765 -30.21625 -28.83985 -28.34472 -27.89579 -25.97863 -23.63547 -22.82881 -21.65875 -20.95851 -20.52020 -20.10547 -19.79498 -19.11274 -17.93845 -17.30671 -17.18919 -17.16154 -16.67326 -16.63776 -16.33485 -16.02047 -15.67126 -15.44559 -15.31617 -14.61223 -14.47791 -14.23111 -13.98823 -13.85245 -13.75679 -13.60441 -13.51409 -13.36173 -13.32042 -13.07805 -13.01949 -12.79880 -12.66493 -12.59703 -12.50005 -12.42172 -12.14468 -11.92515 -11.75456 -11.49858 -11.17849 -10.89930 -10.49095 -10.31402 -10.02424 -9.92774 -9.34703 -8.48978 -5.97404 0.02853 1.33336 1.37448 1.52322 1.85181 1.89319 2.03735 2.26582 2.75700 3.09622 3.17485 3.25939 3.53686 3.56153 3.61989 3.77139 3.82921 4.09032 4.11192 4.16637 4.19441 4.27051 4.38132 4.43168 4.48356 4.56042 4.58717 4.68212 4.73432 4.78841 4.81504 4.89828 4.92130 4.96013 5.00862 5.12210 5.20172 5.25389 5.27705 5.38022 5.40330 5.46039 5.70444 5.85275 6.06366 6.35310 6.58312 6.99870 7.10987 7.53859 8.10679 8.69027 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010191 B = 0.003668 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.949496 B = 7631.704027 C = 9689.694417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.054 4.054 3 C -0.123 4.123 4 C -0.044 4.044 5 F -0.132 7.132 6 C 0.534 3.466 7 O -0.553 6.553 8 N -0.693 5.693 9 C 0.116 3.884 10 H 0.057 0.943 11 C -0.149 4.149 12 C 0.047 3.953 13 H 0.144 0.856 14 C -0.101 4.101 15 C -0.110 4.110 16 C 0.041 3.959 17 H 0.066 0.934 18 N -0.488 5.488 19 C 0.035 3.965 20 C 0.440 3.560 21 O -0.619 6.619 22 N -0.574 5.574 23 C -0.332 4.332 24 H 0.074 0.926 25 C -0.013 4.013 26 N -0.920 5.920 27 Si 0.992 3.008 28 H -0.276 1.276 29 H -0.270 1.270 30 H -0.266 1.266 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.417 0.583 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.076 0.924 41 H 0.103 0.897 42 H 0.079 0.921 43 H 0.054 0.946 44 H 0.070 0.930 45 H 0.114 0.886 46 H 0.395 0.605 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.118 10.935 -3.408 24.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.057 4.057 3 C -0.179 4.179 4 C -0.066 4.066 5 F -0.111 7.111 6 C 0.322 3.678 7 O -0.433 6.433 8 N -0.345 5.345 9 C 0.009 3.991 10 H 0.075 0.925 11 C -0.187 4.187 12 C -0.061 4.061 13 H 0.162 0.838 14 C -0.139 4.139 15 C -0.149 4.149 16 C -0.069 4.069 17 H 0.084 0.916 18 N -0.211 5.211 19 C -0.097 4.097 20 C 0.227 3.773 21 O -0.505 6.505 22 N -0.212 5.212 23 C -0.462 4.462 24 H 0.092 0.908 25 C -0.212 4.212 26 N -0.561 5.561 27 Si 0.815 3.185 28 H -0.201 1.201 29 H -0.195 1.195 30 H -0.191 1.191 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.116 0.884 35 H 0.099 0.901 36 H 0.115 0.885 37 H 0.256 0.744 38 H 0.105 0.895 39 H 0.132 0.868 40 H 0.095 0.905 41 H 0.122 0.878 42 H 0.098 0.902 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.132 0.868 46 H 0.229 0.771 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 21.037 10.760 -2.253 23.736 hybrid contribution -0.892 0.256 -0.799 1.225 sum 20.145 11.016 -3.052 23.163 Atomic orbital electron populations 1.20902 0.89575 1.03092 1.02917 1.23095 0.97775 0.94865 0.90014 1.21054 1.00274 0.92031 1.04541 1.19070 0.77354 0.93600 1.16570 1.91452 1.27767 1.97018 1.94845 1.18728 0.87333 0.84748 0.77017 1.90918 1.14360 1.87234 1.50836 1.45723 1.10705 1.04288 1.73804 1.22625 0.95341 0.83944 0.97173 0.92522 1.23525 1.01281 0.94740 0.99202 1.24782 0.88892 1.00058 0.92322 0.83800 1.22732 0.96722 0.96236 0.98217 1.22649 0.93254 0.99815 0.99151 1.24575 0.98338 0.88588 0.95424 0.91609 1.67582 1.01556 1.13082 1.38866 1.22029 0.89321 1.03241 0.95104 1.20822 0.86415 0.82907 0.87112 1.90483 1.87811 1.51735 1.20472 1.41920 1.05052 1.58885 1.15329 1.19654 0.84140 1.43053 0.99329 0.90791 1.26024 1.02617 0.96489 0.96095 1.69673 1.30394 1.46042 1.10028 0.84898 0.77136 0.78439 0.78017 1.20052 1.19541 1.19118 0.89124 0.91352 0.91831 0.88441 0.90134 0.88466 0.74432 0.89533 0.86773 0.90481 0.87832 0.90220 0.92694 0.91198 0.86785 0.77149 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.51 8.33 71.23 0.59 -1.92 16 2 C -0.05 -1.09 6.12 -17.60 -0.11 -1.20 16 3 C -0.12 -1.47 9.78 71.24 0.70 -0.77 16 4 C -0.04 -1.00 7.37 23.50 0.17 -0.83 16 5 F -0.13 -2.55 15.81 44.97 0.71 -1.84 16 6 C 0.53 15.59 7.74 86.63 0.67 16.26 16 7 O -0.55 -21.30 12.76 -4.05 -0.05 -21.35 16 8 N -0.69 -16.67 3.68 -438.30 -1.61 -18.28 16 9 C 0.12 3.32 2.30 46.61 0.11 3.43 16 10 H 0.06 2.10 6.74 -2.39 -0.02 2.08 16 11 C -0.15 -2.84 5.39 32.21 0.17 -2.67 16 12 C 0.05 0.97 4.96 46.15 0.23 1.20 16 13 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16 14 C -0.10 -1.82 6.46 32.45 0.21 -1.61 16 15 C -0.11 -2.83 6.35 32.45 0.21 -2.63 16 16 C 0.04 1.42 4.10 46.11 0.19 1.61 16 17 H 0.07 3.13 6.85 -2.39 -0.02 3.12 16 18 N -0.49 -16.29 5.32 -808.31 -4.30 -20.59 16 19 C 0.03 1.28 5.17 85.56 0.44 1.72 16 20 C 0.44 22.64 7.46 87.65 0.65 23.30 16 21 O -0.62 -37.03 14.41 -3.08 -0.04 -37.07 16 22 N -0.57 -31.58 5.29 -306.97 -1.62 -33.20 16 23 C -0.33 -20.08 9.68 84.04 0.81 -19.26 16 24 H 0.07 4.81 7.16 -2.91 -0.02 4.78 16 25 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 26 N -0.92 -51.78 13.05 21.66 0.28 -51.49 16 27 Si 0.99 45.24 29.55 68.60 2.03 47.26 16 28 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 29 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 30 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 31 H 0.09 1.49 7.94 -2.39 -0.02 1.47 16 32 H 0.07 1.87 7.22 -2.39 -0.02 1.85 16 33 H 0.06 1.82 7.22 -2.39 -0.02 1.80 16 34 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.08 0.90 7.55 -2.39 -0.02 0.88 16 36 H 0.10 0.83 8.05 -2.39 -0.02 0.81 16 37 H 0.42 7.08 7.50 -92.71 -0.70 6.38 16 38 H 0.09 1.62 7.29 -2.39 -0.02 1.60 16 39 H 0.11 1.41 7.37 -2.39 -0.02 1.39 16 40 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 41 H 0.10 1.13 7.82 -2.39 -0.02 1.12 16 42 H 0.08 1.76 6.42 -2.39 -0.02 1.74 16 43 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.07 2.37 4.86 -2.39 -0.01 2.35 16 45 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 46 H 0.39 20.57 7.90 -92.72 -0.73 19.84 16 47 H 0.28 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -79.90 374.79 0.51 -79.40 By element: Atomic # 1 Polarization: 41.19 SS G_CDS: -0.40 Total: 40.79 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: 5.52 Total: 16.39 kcal Atomic # 7 Polarization: -116.31 SS G_CDS: -7.25 Total: -123.57 kcal Atomic # 8 Polarization: -58.33 SS G_CDS: -0.10 Total: -58.43 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.71 Total: -1.84 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -79.90 0.51 -79.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109153255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.077 kcal (2) G-P(sol) polarization free energy of solvation -79.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds