Wall clock time and date at job start Tue Mar 31 2020 23:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50705 * 120.00163 * 2 1 4 4 C 1.33119 * 119.99867 * 179.97438 * 2 1 3 5 5 F 1.35093 * 119.99810 * 180.02562 * 4 2 1 6 6 C 1.47300 * 119.99851 * 0.02562 * 4 2 1 7 7 O 1.21603 * 120.00046 * 359.97438 * 6 4 2 8 8 N 1.34772 * 120.00012 * 179.97438 * 6 4 2 9 9 C 1.46499 * 119.99981 * 180.02562 * 8 6 4 10 10 H 1.08992 * 110.54850 * 36.40664 * 9 8 6 11 11 C 1.54845 * 110.61113 * 273.54426 * 9 8 6 12 12 C 1.55845 * 103.51669 * 241.33689 * 11 9 8 13 13 H 1.09002 * 115.57663 * 158.88540 * 12 11 9 14 14 C 1.55848 * 105.03432 * 288.27102 * 12 11 9 15 15 C 1.54831 * 103.51967 * 71.72958 * 14 12 11 16 16 C 1.55851 * 110.74505 * 159.37087 * 9 8 6 17 17 H 1.08997 * 115.58381 * 319.68092 * 16 9 8 18 18 N 1.50643 * 101.03122 * 32.99407 * 12 11 9 19 19 C 1.46904 * 111.00112 * 62.34588 * 18 12 11 20 20 C 1.50700 * 109.47124 * 69.87591 * 19 18 12 21 21 O 1.21292 * 119.99931 * 359.97438 * 20 19 18 22 22 N 1.34774 * 119.99956 * 180.02562 * 20 19 18 23 23 C 1.37104 * 119.99857 * 179.97438 * 22 20 19 24 24 H 1.07995 * 120.00058 * 0.27796 * 23 22 20 25 25 C 1.38955 * 119.99721 * 179.97438 * 23 22 20 26 26 N 1.31408 * 119.99445 * 179.97438 * 25 23 22 27 27 Si 1.86798 * 119.99993 * 0.02562 * 25 23 22 28 28 H 1.48493 * 109.47326 * 89.99949 * 27 25 23 29 29 H 1.48506 * 109.46545 * 209.99699 * 27 25 23 30 30 H 1.48498 * 109.47210 * 329.99410 * 27 25 23 31 31 H 1.08996 * 109.47505 * 240.00432 * 1 2 3 32 32 H 1.09006 * 109.46521 * 359.97438 * 1 2 3 33 33 H 1.08997 * 109.47379 * 119.99385 * 1 2 3 34 34 H 1.08997 * 109.46737 * 269.99742 * 3 2 1 35 35 H 1.09001 * 109.46953 * 29.99923 * 3 2 1 36 36 H 1.08999 * 109.46655 * 149.99711 * 3 2 1 37 37 H 0.96999 * 119.99628 * 0.02562 * 8 6 4 38 38 H 1.08999 * 110.61089 * 122.82778 * 11 9 8 39 39 H 1.09007 * 110.74220 * 359.90995 * 11 9 8 40 40 H 1.08994 * 110.61042 * 190.24289 * 14 12 11 41 41 H 1.09005 * 110.60929 * 313.21986 * 14 12 11 42 42 H 1.08997 * 110.61248 * 241.49268 * 15 14 12 43 43 H 1.08996 * 110.74693 * 118.57403 * 15 14 12 44 44 H 1.08997 * 109.47232 * 309.87191 * 19 18 12 45 45 H 1.09002 * 109.47005 * 189.87690 * 19 18 12 46 46 H 0.96999 * 120.00050 * 0.02562 * 22 20 19 47 47 H 0.97000 * 119.99412 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1725 -1.1529 0.0005 5 9 3.5235 -1.1529 0.0010 6 6 1.4360 -2.4285 0.0005 7 8 0.2199 -2.4284 0.0005 8 7 2.1098 -3.5957 0.0005 9 6 1.3772 -4.8644 -0.0001 10 1 0.4748 -4.7848 -0.6061 11 6 1.0265 -5.2919 1.4463 12 6 1.7668 -6.6531 1.6134 13 1 1.9583 -6.9615 2.6412 14 6 0.9669 -7.6592 0.7320 15 6 1.3176 -7.2316 -0.7143 16 6 2.2826 -6.0244 -0.5134 17 1 2.9279 -5.7797 -1.3571 18 7 2.9853 -6.4255 0.7573 19 6 3.7977 -5.3193 1.2813 20 6 4.4442 -5.7402 2.5759 21 8 4.2471 -6.8521 3.0188 22 7 5.2404 -4.8808 3.2421 23 6 5.8281 -5.2636 4.4202 24 1 5.6566 -6.2553 4.8120 25 6 6.6495 -4.3777 5.1067 26 7 7.2124 -4.7445 6.2361 27 14 6.9523 -2.6651 4.4250 28 1 5.9242 -1.7331 4.9533 29 1 8.3010 -2.1997 4.8373 30 1 6.8729 -2.7013 2.9426 31 1 -0.3634 -0.5137 0.8900 32 1 -0.3632 1.0278 0.0005 33 1 -0.3634 -0.5137 -0.8900 34 1 2.4422 1.6197 -1.0277 35 1 1.6714 2.0648 0.5138 36 1 3.2129 1.1747 0.5139 37 1 3.0798 -3.5957 0.0009 38 1 -0.0498 -5.4243 1.5570 39 1 1.3982 -4.5620 2.1655 40 1 1.2964 -8.6808 0.9207 41 1 -0.1035 -7.5606 0.9124 42 1 0.4210 -6.9212 -1.2507 43 1 1.8201 -8.0403 -1.2449 44 1 3.1607 -4.4527 1.4582 45 1 4.5699 -5.0608 0.5568 46 1 5.3971 -3.9913 2.8885 47 1 7.7855 -4.1259 6.7156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110447627.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:43 Heat of formation + Delta-G solvation = -57.652155 kcal Electronic energy + Delta-G solvation = -31182.027721 eV Core-core repulsion = 26894.990740 eV Total energy + Delta-G solvation = -4287.036981 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.07685 -41.47814 -39.54522 -38.02457 -35.73137 -34.38368 -33.99147 -32.09206 -31.56640 -29.85805 -29.35364 -28.17311 -27.39700 -26.57912 -24.02590 -22.97026 -21.13703 -20.73583 -20.15958 -19.20663 -19.14583 -18.30798 -17.92898 -16.72863 -16.52589 -16.13350 -15.85399 -15.48923 -15.35524 -14.89207 -14.78233 -14.38471 -14.24991 -13.84769 -13.61390 -13.36439 -13.26848 -12.95558 -12.85313 -12.69284 -12.64423 -12.47927 -12.32645 -12.14431 -12.09252 -11.95409 -11.71017 -11.54212 -11.40043 -11.23826 -11.04804 -10.69718 -10.57933 -10.37145 -9.97908 -9.87895 -9.57127 -9.41936 -9.00627 -8.67873 -8.23655 -8.16767 -6.31462 -3.82691 0.85219 2.74294 2.80161 3.02577 3.06622 3.14649 3.70613 3.77678 3.96564 4.09937 4.33524 4.44084 4.53076 4.57173 4.62308 4.84610 4.90737 5.07871 5.12977 5.15148 5.19516 5.23096 5.30273 5.37290 5.40632 5.44860 5.52560 5.54654 5.57740 5.66537 5.69647 5.72340 5.87423 5.89695 5.91436 5.97826 6.10663 6.16490 6.17808 6.32774 6.41163 6.74376 7.02909 7.17669 7.57527 7.81810 8.13789 8.59582 8.94804 9.42051 9.82535 10.81661 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007920 B = 0.005147 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3534.291449 B = 5438.302866 C = 8392.776951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.069 4.069 3 C -0.127 4.127 4 C -0.031 4.031 5 F -0.137 7.137 6 C 0.547 3.453 7 O -0.519 6.519 8 N -0.718 5.718 9 C 0.112 3.888 10 H 0.099 0.901 11 C -0.166 4.166 12 C 0.058 3.942 13 H 0.130 0.870 14 C -0.116 4.116 15 C -0.107 4.107 16 C 0.034 3.966 17 H 0.118 0.882 18 N -0.462 5.462 19 C 0.002 3.998 20 C 0.456 3.544 21 O -0.559 6.559 22 N -0.591 5.591 23 C -0.304 4.304 24 H 0.120 0.880 25 C 0.043 3.957 26 N -0.881 5.881 27 Si 0.876 3.124 28 H -0.271 1.271 29 H -0.276 1.276 30 H -0.269 1.269 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.407 0.593 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.087 0.913 46 H 0.369 0.631 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.525 8.804 -17.246 23.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.072 4.072 3 C -0.184 4.184 4 C -0.053 4.053 5 F -0.116 7.116 6 C 0.334 3.666 7 O -0.398 6.398 8 N -0.371 5.371 9 C 0.007 3.993 10 H 0.117 0.883 11 C -0.206 4.206 12 C -0.050 4.050 13 H 0.148 0.852 14 C -0.154 4.154 15 C -0.145 4.145 16 C -0.075 4.075 17 H 0.135 0.865 18 N -0.184 5.184 19 C -0.131 4.131 20 C 0.242 3.758 21 O -0.441 6.441 22 N -0.230 5.230 23 C -0.432 4.432 24 H 0.138 0.862 25 C -0.160 4.160 26 N -0.521 5.521 27 Si 0.702 3.298 28 H -0.197 1.197 29 H -0.201 1.201 30 H -0.194 1.194 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.245 0.755 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.106 0.894 46 H 0.202 0.798 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.884 7.562 -16.795 23.065 hybrid contribution 0.856 2.350 -0.233 2.512 sum -13.028 9.912 -17.028 23.621 Atomic orbital electron populations 1.20932 0.88772 1.01897 1.04604 1.22772 0.98087 0.93723 0.92635 1.20961 1.00527 0.93576 1.03303 1.19410 0.77306 0.94452 1.14171 1.91481 1.28472 1.97076 1.94526 1.18270 0.87516 0.83612 0.77205 1.90813 1.12342 1.86830 1.49769 1.46447 1.10905 1.05504 1.74244 1.22956 0.96367 0.82338 0.97655 0.88268 1.23799 1.01823 0.99238 0.95696 1.24567 0.87900 0.93396 0.99145 0.85198 1.22617 0.98863 0.99862 0.94040 1.22487 0.97783 0.96790 0.97473 1.24852 0.94292 0.93185 0.95216 0.86459 1.67520 1.15149 1.33971 1.01792 1.22540 0.98196 0.94646 0.97673 1.19498 0.83712 0.86414 0.86220 1.90548 1.63805 1.20702 1.69010 1.42205 1.44277 1.13934 1.22625 1.19421 1.24675 1.02776 0.96374 0.86246 1.25016 0.96811 0.98281 0.95917 1.69619 1.31345 1.36230 1.14906 0.86724 0.79055 0.84809 0.79186 1.19666 1.20097 1.19408 0.89486 0.92081 0.89638 0.89897 0.90308 0.90586 0.75515 0.90179 0.90881 0.90671 0.91357 0.91256 0.90467 0.91357 0.89442 0.79844 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 8.33 36.00 0.30 -0.67 16 2 C -0.07 -0.69 6.12 -101.13 -0.62 -1.31 16 3 C -0.13 -0.97 9.78 36.01 0.35 -0.62 16 4 C -0.03 -0.37 7.37 -37.68 -0.28 -0.65 16 5 F -0.14 -1.68 15.81 2.25 0.04 -1.65 16 6 C 0.55 6.97 7.74 -12.58 -0.10 6.88 16 7 O -0.52 -7.31 12.80 5.27 0.07 -7.25 16 8 N -0.72 -8.57 3.88 -52.52 -0.20 -8.78 16 9 C 0.11 1.32 2.52 -65.44 -0.17 1.15 16 10 H 0.10 1.14 7.35 -51.93 -0.38 0.76 16 11 C -0.17 -2.21 5.49 -24.24 -0.13 -2.34 16 12 C 0.06 0.87 4.27 -62.56 -0.27 0.60 16 13 H 0.13 2.36 6.93 -51.93 -0.36 2.00 16 14 C -0.12 -1.35 6.43 -24.25 -0.16 -1.50 16 15 C -0.11 -1.08 6.43 -24.24 -0.16 -1.23 16 16 C 0.03 0.39 4.65 -62.55 -0.29 0.10 16 17 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 18 N -0.46 -7.13 5.30 -207.00 -1.10 -8.22 16 19 C 0.00 0.03 4.01 -4.97 -0.02 0.01 16 20 C 0.46 10.33 7.58 -10.99 -0.08 10.25 16 21 O -0.56 -14.79 14.44 5.55 0.08 -14.71 16 22 N -0.59 -14.13 5.09 -10.96 -0.06 -14.19 16 23 C -0.30 -8.61 10.16 -14.93 -0.15 -8.76 16 24 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 25 C 0.04 1.18 5.50 -17.47 -0.10 1.08 16 26 N -0.88 -25.83 13.96 55.50 0.77 -25.05 16 27 Si 0.88 19.60 27.74 -169.99 -4.71 14.88 16 28 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 29 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 30 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 31 H 0.09 0.92 7.22 -51.93 -0.38 0.55 16 32 H 0.06 0.42 7.94 -51.93 -0.41 0.00 16 33 H 0.09 0.84 7.22 -51.93 -0.38 0.46 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.48 8.05 -51.93 -0.42 0.06 16 36 H 0.08 0.64 7.55 -51.93 -0.39 0.25 16 37 H 0.41 4.69 5.83 -40.82 -0.24 4.45 16 38 H 0.08 0.98 7.82 -51.93 -0.41 0.57 16 39 H 0.07 1.12 7.07 -51.92 -0.37 0.75 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.07 0.68 7.82 -51.93 -0.41 0.27 16 42 H 0.07 0.58 7.82 -51.93 -0.41 0.17 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 1.05 3.54 -51.93 -0.18 0.87 16 45 H 0.09 1.28 8.00 -51.93 -0.42 0.87 16 46 H 0.37 7.86 5.76 -40.82 -0.24 7.62 16 47 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 370.30 15.07 5.58 5.58 Total: -1.00 -32.98 370.30 -8.01 -40.99 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -6.62 Total: 15.40 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -1.86 Total: 2.98 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.58 Total: -56.24 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: 0.15 Total: -21.95 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.71 Total: 14.88 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.98 -8.01 -40.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110447627.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.658 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds