Wall clock time and date at job start Tue Mar 31 2020 22:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29025 * 124.91251 * 2 1 4 4 C 1.31782 * 117.12291 * 180.02562 * 3 2 1 5 5 C 1.50696 * 122.75225 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.46881 * 305.02046 * 5 4 3 7 7 C 1.52999 * 109.47291 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47436 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99509 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00194 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99893 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.47456 * 324.99699 * 11 10 8 13 13 C 1.53005 * 109.47351 * 84.99825 * 11 10 8 14 14 C 1.53001 * 109.46991 * 204.99554 * 11 10 8 15 15 C 1.52997 * 109.47049 * 65.00027 * 14 11 10 16 16 H 1.09001 * 109.46832 * 55.00084 * 15 14 11 17 17 C 1.53006 * 109.47127 * 174.99763 * 15 14 11 18 18 N 1.46492 * 109.47244 * 295.00135 * 15 14 11 19 19 C 1.36940 * 120.00114 * 155.00043 * 18 15 14 20 20 H 1.07993 * 119.99751 * 359.97438 * 19 18 15 21 21 C 1.38813 * 120.00020 * 179.97438 * 19 18 15 22 22 N 1.31623 * 120.00145 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99789 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46987 * 90.00577 * 23 21 19 25 25 H 1.48502 * 109.47063 * 210.00262 * 23 21 19 26 26 H 1.48499 * 109.47321 * 330.00080 * 23 21 19 27 27 C 1.33643 * 114.49966 * 0.22648 * 4 3 2 28 28 S 1.70974 * 124.91659 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47334 * 90.00360 * 1 2 3 30 30 H 1.09008 * 109.46880 * 209.99865 * 1 2 3 31 31 H 1.08993 * 109.47507 * 330.00102 * 1 2 3 32 32 H 1.08996 * 109.47204 * 185.02067 * 5 4 3 33 33 H 1.09000 * 109.47268 * 65.01506 * 5 4 3 34 34 H 1.08996 * 109.47185 * 60.00009 * 6 5 4 35 35 H 1.08998 * 109.47200 * 299.99995 * 6 5 4 36 36 H 1.08996 * 109.47091 * 59.99472 * 7 6 5 37 37 H 1.09007 * 109.47149 * 300.00340 * 7 6 5 38 38 H 0.97002 * 120.00117 * 359.97438 * 10 8 7 39 39 H 1.09004 * 109.46986 * 59.99408 * 13 11 10 40 40 H 1.08992 * 109.47402 * 179.97438 * 13 11 10 41 41 H 1.09000 * 109.46659 * 300.00045 * 13 11 10 42 42 H 1.08998 * 109.47252 * 305.00223 * 14 11 10 43 43 H 1.09006 * 109.47074 * 185.00416 * 14 11 10 44 44 H 1.09001 * 109.46801 * 300.00272 * 17 15 14 45 45 H 1.09001 * 109.46998 * 59.99868 * 17 15 14 46 46 H 1.09000 * 109.47050 * 180.02562 * 17 15 14 47 47 H 0.97005 * 120.00153 * 334.99565 * 18 15 14 48 48 H 0.96993 * 119.99993 * 179.97438 * 22 21 19 49 49 H 1.08003 * 126.03680 * 179.77252 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8794 -0.0005 5 6 4.5307 2.0246 -0.0012 6 6 4.2325 2.9500 -1.1826 7 6 5.2266 4.1131 -1.1829 8 6 4.9326 5.0249 -2.3461 9 8 4.0183 4.7693 -3.1009 10 7 5.6863 6.1237 -2.5484 11 6 5.4008 7.0098 -3.6795 12 1 5.0585 6.4173 -4.5278 13 6 4.3120 8.0088 -3.2827 14 6 6.6720 7.7681 -4.0669 15 6 7.7191 6.7786 -4.5820 16 1 7.2957 6.1941 -5.3988 17 6 8.9427 7.5470 -5.0855 18 7 8.1190 5.8811 -3.4955 19 6 8.6178 4.6385 -3.7824 20 1 8.7158 4.3200 -4.8096 21 6 8.9973 3.7882 -2.7528 22 7 8.8773 4.1762 -1.5008 23 14 9.6769 2.0929 -3.1442 24 1 11.1528 2.1725 -3.2886 25 1 9.3372 1.1569 -2.0424 26 1 9.0812 1.6014 -4.4125 27 6 3.9354 -0.4006 -0.0058 28 16 2.4857 -1.4020 0.0006 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3633 -0.8901 0.5139 31 1 -0.3634 0.8899 0.5138 32 1 5.5447 1.6353 -0.0915 33 1 4.4374 2.5831 0.9303 34 1 3.2185 3.3393 -1.0923 35 1 4.3258 2.3916 -2.1140 36 1 6.2408 3.7241 -1.2729 37 1 5.1330 4.6714 -0.2514 38 1 6.4178 6.3279 -1.9449 39 1 4.6543 8.6014 -2.4343 40 1 4.0999 8.6683 -4.1241 41 1 3.4064 7.4686 -3.0067 42 1 7.0639 8.2901 -3.1940 43 1 6.4397 8.4912 -4.8487 44 1 8.6450 8.2147 -5.8939 45 1 9.3660 8.1315 -4.2687 46 1 9.6884 6.8420 -5.4529 47 1 8.0307 6.1671 -2.5728 48 1 9.1421 3.5820 -0.7814 49 1 4.9546 -0.7580 -0.0106 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134396012.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:36 Heat of formation + Delta-G solvation = -4.711015 kcal Electronic energy + Delta-G solvation = -27792.719532 eV Core-core repulsion = 24074.191427 eV Total energy + Delta-G solvation = -3718.528105 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.95002 -39.16212 -36.81360 -34.58246 -33.98515 -32.29881 -31.96813 -30.53550 -28.75333 -28.45107 -27.16555 -26.27673 -23.66164 -23.34652 -21.89908 -20.54995 -20.16649 -19.70622 -19.25359 -17.52527 -17.16718 -16.22514 -15.73650 -15.37927 -15.13213 -14.87396 -14.79134 -14.00638 -13.89606 -13.71304 -13.65244 -13.26165 -13.18505 -12.76311 -12.72910 -12.68132 -12.30365 -12.16735 -12.10259 -11.81375 -11.72710 -11.61816 -11.46389 -11.08114 -10.96015 -10.86114 -10.78338 -10.70234 -10.31405 -10.24514 -10.21760 -9.87847 -9.67636 -9.62634 -9.42219 -9.00478 -8.94687 -8.65957 -8.22516 -6.93795 -5.80827 -3.06260 0.69722 1.32972 1.69939 2.81197 3.40272 3.46716 3.49084 3.52002 3.98548 4.04639 4.57952 4.87382 5.11162 5.15782 5.18725 5.25745 5.28761 5.42138 5.46968 5.53476 5.56186 5.58447 5.65984 5.72550 5.75000 5.90678 5.97686 6.01177 6.03246 6.05844 6.09846 6.19514 6.25046 6.27831 6.40927 6.43558 6.50286 6.60399 6.63993 6.70996 6.87699 6.88869 7.07911 7.33200 7.69851 7.77683 8.34475 8.40658 9.09631 9.50305 10.05075 10.41062 11.41610 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011306 B = 0.003200 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.064771 B = 8746.688814 C =10716.744478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.048 3.952 3 N -0.463 5.463 4 C 0.083 3.917 5 C -0.047 4.047 6 C -0.088 4.088 7 C -0.144 4.144 8 C 0.530 3.470 9 O -0.569 6.569 10 N -0.699 5.699 11 C 0.149 3.851 12 H 0.080 0.920 13 C -0.161 4.161 14 C -0.133 4.133 15 C 0.169 3.831 16 H 0.047 0.953 17 C -0.163 4.163 18 N -0.715 5.715 19 C -0.224 4.224 20 H 0.066 0.934 21 C -0.010 4.010 22 N -0.934 5.934 23 Si 0.897 3.103 24 H -0.293 1.293 25 H -0.292 1.292 26 H -0.285 1.285 27 C -0.259 4.259 28 S 0.093 5.907 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.120 0.880 37 H 0.081 0.919 38 H 0.404 0.596 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.035 0.965 45 H 0.045 0.955 46 H 0.052 0.948 47 H 0.378 0.622 48 H 0.253 0.747 49 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.287 -2.678 4.394 13.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.231 4.231 3 N -0.179 5.179 4 C -0.048 4.048 5 C -0.087 4.087 6 C -0.126 4.126 7 C -0.184 4.184 8 C 0.317 3.683 9 O -0.449 6.449 10 N -0.352 5.352 11 C 0.044 3.956 12 H 0.098 0.902 13 C -0.220 4.220 14 C -0.172 4.172 15 C 0.059 3.941 16 H 0.065 0.935 17 C -0.224 4.224 18 N -0.359 5.359 19 C -0.355 4.355 20 H 0.084 0.916 21 C -0.206 4.206 22 N -0.583 5.583 23 Si 0.729 3.271 24 H -0.220 1.220 25 H -0.218 1.218 26 H -0.210 1.210 27 C -0.398 4.398 28 S 0.347 5.653 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.138 0.862 37 H 0.099 0.901 38 H 0.242 0.758 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.213 0.787 48 H 0.063 0.937 49 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -13.340 -3.588 3.789 14.324 hybrid contribution 1.684 -0.175 0.323 1.723 sum -11.657 -3.763 4.112 12.921 Atomic orbital electron populations 1.20428 0.85315 1.03995 1.03904 1.27049 1.01705 0.90860 1.03459 1.66083 1.04708 1.31329 1.15732 1.20398 0.90057 0.94430 0.99942 1.20300 0.95565 0.92582 1.00253 1.21145 0.99386 0.94976 0.97116 1.21693 1.03516 0.96371 0.96786 1.20450 0.80948 0.80778 0.86109 1.90600 1.32091 1.73738 1.48462 1.45981 1.34410 1.24842 1.29921 1.20750 0.94030 0.90611 0.90197 0.90180 1.22203 0.99483 0.99117 1.01189 1.22197 0.95392 0.98302 1.01273 1.20278 0.91468 0.90306 0.92009 0.93516 1.22424 1.00654 0.99791 0.99486 1.42448 1.75965 1.14123 1.03319 1.19209 1.32886 0.90976 0.92472 0.91587 1.24550 1.02617 0.98084 0.95309 1.69594 1.54764 1.36481 0.97507 0.86332 0.78816 0.84903 0.77072 1.22024 1.21816 1.21048 1.26853 1.02934 0.95654 1.14350 1.83825 0.98606 1.13372 1.69471 0.89592 0.90293 0.89286 0.89816 0.90132 0.91120 0.91742 0.86209 0.90083 0.75847 0.92922 0.92357 0.92483 0.91813 0.91020 0.94627 0.93616 0.92927 0.78651 0.93667 0.80559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.46 36.01 0.38 -0.25 16 2 C 0.05 0.58 7.39 -13.45 -0.10 0.49 16 3 N -0.46 -6.99 10.34 -8.06 -0.08 -7.08 16 4 C 0.08 1.23 6.08 -84.23 -0.51 0.72 16 5 C -0.05 -0.70 5.71 -27.88 -0.16 -0.86 16 6 C -0.09 -1.52 4.40 -26.73 -0.12 -1.64 16 7 C -0.14 -2.60 5.70 -27.89 -0.16 -2.75 16 8 C 0.53 10.63 7.79 -10.99 -0.09 10.55 16 9 O -0.57 -12.97 15.64 5.56 0.09 -12.88 16 10 N -0.70 -12.75 3.80 -53.81 -0.20 -12.95 16 11 C 0.15 2.48 2.57 -67.93 -0.17 2.30 16 12 H 0.08 1.52 7.58 -51.93 -0.39 1.13 16 13 C -0.16 -2.27 9.48 37.16 0.35 -1.92 16 14 C -0.13 -2.03 4.43 -26.73 -0.12 -2.15 16 15 C 0.17 3.17 2.89 -67.93 -0.20 2.97 16 16 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 17 C -0.16 -2.82 9.49 37.16 0.35 -2.46 16 18 N -0.72 -15.97 3.84 -53.43 -0.21 -16.18 16 19 C -0.22 -5.76 9.93 -15.06 -0.15 -5.91 16 20 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 21 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 22 N -0.93 -24.43 12.78 55.49 0.71 -23.72 16 23 Si 0.90 21.49 29.55 -169.99 -5.02 16.46 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 27 C -0.26 -3.39 11.07 29.12 0.32 -3.07 16 28 S 0.09 1.03 23.18 -107.50 -2.49 -1.46 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.47 8.14 -51.92 -0.42 0.04 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.22 8.03 -51.93 -0.42 0.80 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.07 1.29 8.03 -51.93 -0.42 0.87 16 35 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 36 H 0.12 2.46 7.86 -51.93 -0.41 2.05 16 37 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 38 H 0.40 7.40 6.51 -40.82 -0.27 7.14 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.38 8.63 5.70 -40.82 -0.23 8.39 16 48 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 49 H 0.18 2.01 8.06 -52.48 -0.42 1.58 16 LS Contribution 413.31 15.07 6.23 6.23 Total: -1.00 -29.81 413.31 -9.89 -39.70 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: -8.44 Total: 16.25 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -0.46 Total: -4.37 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: 0.22 Total: -59.93 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.09 Total: -12.88 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.49 Total: -1.46 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -29.81 -9.89 -39.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134396012.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.990 kcal (2) G-P(sol) polarization free energy of solvation -29.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds