Wall clock time and date at job start Tue Mar 31 2020 23:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.46919 * 2 1 4 4 C 1.50704 * 109.46840 * 180.02562 * 3 2 1 5 5 N 1.29427 * 124.80315 * 90.02434 * 4 3 2 6 6 C 1.30945 * 117.36158 * 180.02562 * 5 4 3 7 7 C 1.50700 * 122.90244 * 180.02562 * 6 5 4 8 8 C 1.35656 * 114.19439 * 359.97438 * 6 5 4 9 9 C 1.46683 * 126.13146 * 179.97438 * 8 6 5 10 10 O 1.21685 * 120.00134 * 0.02562 * 9 8 6 11 11 N 1.34777 * 119.99599 * 180.02562 * 9 8 6 12 12 C 1.46503 * 119.99650 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.47502 * 324.99952 * 12 11 9 14 14 C 1.53004 * 109.47390 * 84.99831 * 12 11 9 15 15 C 1.53003 * 109.46950 * 204.99748 * 12 11 9 16 16 C 1.52997 * 109.46992 * 65.00161 * 15 12 11 17 17 H 1.09001 * 109.46922 * 54.99919 * 16 15 12 18 18 C 1.53006 * 109.47164 * 174.99670 * 16 15 12 19 19 N 1.46496 * 109.47194 * 294.99585 * 16 15 12 20 20 C 1.36940 * 120.00276 * 154.99852 * 19 16 15 21 21 H 1.08002 * 119.99359 * 0.02562 * 20 19 16 22 22 C 1.38803 * 120.00232 * 180.02562 * 20 19 16 23 23 N 1.31619 * 120.00338 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99991 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46976 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47193 * 119.99974 * 24 22 20 27 27 H 1.48510 * 109.47034 * 240.00106 * 24 22 20 28 28 S 1.70959 * 124.80402 * 270.33480 * 4 3 2 29 29 H 1.09005 * 109.47497 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47370 * 299.99701 * 1 2 3 31 31 H 1.08997 * 109.47469 * 60.00005 * 1 2 3 32 32 H 1.08999 * 109.47059 * 239.99602 * 2 1 3 33 33 H 1.09005 * 109.47022 * 119.99519 * 2 1 3 34 34 H 1.08999 * 109.47580 * 59.99921 * 3 2 1 35 35 H 1.08994 * 109.47352 * 299.99562 * 3 2 1 36 36 H 1.09001 * 109.46780 * 269.95947 * 7 6 5 37 37 H 1.09004 * 109.47474 * 29.95780 * 7 6 5 38 38 H 1.08997 * 109.47106 * 149.95958 * 7 6 5 39 39 H 0.96994 * 120.00634 * 359.97438 * 11 9 8 40 40 H 1.09006 * 109.46751 * 59.99481 * 14 12 11 41 41 H 1.08995 * 109.47371 * 180.02562 * 14 12 11 42 42 H 1.09000 * 109.46797 * 300.00411 * 14 12 11 43 43 H 1.09002 * 109.47471 * 304.99904 * 15 12 11 44 44 H 1.09006 * 109.46544 * 185.00064 * 15 12 11 45 45 H 1.09001 * 109.47002 * 59.99738 * 18 16 15 46 46 H 1.08993 * 109.46955 * 180.02562 * 18 16 15 47 47 H 1.09000 * 109.47050 * 300.00004 * 18 16 15 48 48 H 0.97003 * 119.99825 * 335.00349 * 19 16 15 49 49 H 0.96996 * 120.00427 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.2852 1.4430 -1.0637 6 6 5.5837 1.4424 -0.8947 7 6 6.5588 1.4436 -2.0437 8 6 5.9753 1.4417 0.4042 9 6 7.3592 1.4404 0.8903 10 8 8.2825 1.4403 0.0977 11 7 7.6081 1.4393 2.2149 12 6 8.9903 1.4386 2.7004 13 1 9.6120 0.8495 2.0262 14 6 9.5137 2.8754 2.7519 15 6 9.0380 0.8279 4.1025 16 6 8.6334 -0.6458 4.0309 17 1 9.2675 -1.1621 3.3101 18 6 8.8006 -1.2882 5.4094 19 7 7.2336 -0.7481 3.6111 20 6 6.7859 -1.8839 2.9909 21 1 7.4648 -2.7045 2.8116 22 6 5.4597 -1.9806 2.5927 23 7 4.6325 -0.9803 2.8107 24 14 4.8489 -3.5303 1.7473 25 1 5.9674 -4.4988 1.6208 26 1 3.7578 -4.1360 2.5522 27 1 4.3360 -3.1879 0.3963 28 16 4.5233 1.4340 1.4027 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 6.7941 0.4161 -2.3215 37 1 6.1153 1.9580 -2.8962 38 1 7.4724 1.9573 -1.7444 39 1 6.8722 1.4398 2.8467 40 1 8.8919 3.4646 3.4261 41 1 10.5422 2.8748 3.1127 42 1 9.4796 3.3105 1.7531 43 1 8.3483 1.3628 4.7555 44 1 10.0501 0.9080 4.4994 45 1 8.1665 -0.7719 6.1302 46 1 8.5128 -2.3382 5.3582 47 1 9.8421 -1.2122 5.7218 48 1 6.6238 -0.0111 3.7724 49 1 3.7058 -1.0477 2.5321 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146315553.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:56 Heat of formation + Delta-G solvation = -2.500130 kcal Electronic energy + Delta-G solvation = -29170.471038 eV Core-core repulsion = 25452.038804 eV Total energy + Delta-G solvation = -3718.432234 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.58375 -38.63916 -36.78100 -34.88804 -34.27087 -32.45617 -31.17973 -30.66695 -28.78203 -27.74771 -27.20236 -26.37901 -23.91057 -22.82166 -22.01627 -20.91499 -20.36208 -20.10818 -18.62839 -17.44952 -17.15706 -16.10291 -15.70076 -14.94945 -14.73601 -14.67215 -14.33410 -14.04734 -13.81152 -13.73424 -13.26175 -13.10858 -12.91980 -12.85313 -12.68329 -12.21935 -12.12486 -11.92342 -11.86295 -11.82794 -11.74674 -11.69507 -11.27056 -11.13241 -10.99036 -10.91298 -10.85874 -10.49138 -10.46887 -10.40783 -10.34331 -10.03596 -9.89571 -9.27885 -9.23281 -8.79133 -8.48752 -8.38803 -7.79412 -7.02146 -6.02917 -3.19699 1.09346 2.20299 2.57950 3.23795 3.32281 3.38363 3.41509 3.79274 4.05261 4.42137 4.69673 5.02985 5.19634 5.25294 5.30771 5.35964 5.36389 5.43635 5.61752 5.65892 5.73181 5.79549 5.81042 5.89398 5.92082 5.94199 5.95056 5.97164 6.06624 6.14541 6.18487 6.26771 6.29737 6.35727 6.36964 6.45118 6.49403 6.52603 6.53511 6.56401 6.73880 6.93771 7.03994 7.17253 7.46066 8.11287 8.17943 8.56456 8.92225 9.24539 9.77355 10.12352 11.13341 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010039 B = 0.005631 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.372682 B = 4971.292387 C = 6577.818388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.030 4.030 4 C -0.031 4.031 5 N -0.490 5.490 6 C 0.116 3.884 7 C -0.076 4.076 8 C -0.323 4.323 9 C 0.610 3.390 10 O -0.554 6.554 11 N -0.699 5.699 12 C 0.151 3.849 13 H 0.085 0.915 14 C -0.162 4.162 15 C -0.134 4.134 16 C 0.166 3.834 17 H 0.051 0.949 18 C -0.163 4.163 19 N -0.714 5.714 20 C -0.190 4.190 21 H 0.073 0.927 22 C -0.025 4.025 23 N -0.901 5.901 24 Si 0.901 3.099 25 H -0.281 1.281 26 H -0.290 1.290 27 H -0.290 1.290 28 S 0.322 5.678 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.091 0.909 39 H 0.399 0.601 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.046 0.954 46 H 0.053 0.947 47 H 0.038 0.962 48 H 0.379 0.621 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.250 7.343 1.354 7.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.071 4.071 4 C -0.303 4.303 5 N -0.206 5.206 6 C -0.029 4.029 7 C -0.135 4.135 8 C -0.451 4.451 9 C 0.398 3.602 10 O -0.436 6.436 11 N -0.351 5.351 12 C 0.046 3.954 13 H 0.103 0.897 14 C -0.221 4.221 15 C -0.173 4.173 16 C 0.057 3.943 17 H 0.069 0.931 18 C -0.223 4.223 19 N -0.355 5.355 20 C -0.322 4.322 21 H 0.091 0.909 22 C -0.220 4.220 23 N -0.551 5.551 24 Si 0.732 3.268 25 H -0.206 1.206 26 H -0.217 1.217 27 H -0.217 1.217 28 S 0.584 5.416 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.110 0.890 39 H 0.236 0.764 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.094 0.906 45 H 0.065 0.935 46 H 0.072 0.928 47 H 0.057 0.943 48 H 0.214 0.786 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.148 7.127 1.472 7.279 hybrid contribution -0.438 -1.069 -0.802 1.406 sum -0.586 6.058 0.671 6.123 Atomic orbital electron populations 1.21748 0.95654 1.01597 1.01535 1.21563 0.95442 0.95905 1.03203 1.20077 0.86152 0.97956 1.02915 1.27114 1.01250 1.08157 0.93744 1.65844 1.04191 1.18492 1.32099 1.20165 0.89847 0.99618 0.93238 1.20421 0.96964 1.02504 0.93646 1.25296 0.98512 1.23582 0.97687 1.16596 0.86217 0.75175 0.82233 1.90662 1.45038 1.52659 1.55201 1.45869 1.08297 1.74540 1.06397 1.20806 0.83518 0.95618 0.95470 0.89734 1.22211 1.00595 0.97106 1.02177 1.22221 1.01858 0.97588 0.95630 1.20359 0.87660 0.92323 0.93996 0.93099 1.22390 0.98992 1.01681 0.99190 1.42621 1.05178 1.18306 1.69412 1.19506 0.93492 0.93458 1.25699 0.90921 1.24521 0.96323 0.98105 1.03031 1.69291 1.04724 1.29441 1.51614 0.86164 0.78689 0.82754 0.79178 1.20646 1.21729 1.21672 1.84368 0.94223 1.55946 1.07060 0.92770 0.92666 0.92870 0.91724 0.91195 0.90521 0.89930 0.91546 0.92224 0.89038 0.76374 0.92843 0.92092 0.92246 0.91714 0.90558 0.93484 0.92817 0.94334 0.78625 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 37.16 0.37 -1.37 16 2 C -0.12 -1.83 5.92 -26.73 -0.16 -1.99 16 3 C -0.03 -0.45 5.79 -27.88 -0.16 -0.61 16 4 C -0.03 -0.58 6.64 -13.29 -0.09 -0.67 16 5 N -0.49 -10.05 10.50 -7.70 -0.08 -10.13 16 6 C 0.12 2.44 6.79 -83.89 -0.57 1.87 16 7 C -0.08 -1.43 9.69 36.01 0.35 -1.08 16 8 C -0.32 -6.78 6.48 -37.10 -0.24 -7.03 16 9 C 0.61 12.78 7.74 -12.85 -0.10 12.68 16 10 O -0.55 -12.42 13.93 5.20 0.07 -12.35 16 11 N -0.70 -12.77 3.79 -55.11 -0.21 -12.98 16 12 C 0.15 2.39 2.57 -67.93 -0.17 2.21 16 13 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 14 C -0.16 -2.16 9.48 37.16 0.35 -1.81 16 15 C -0.13 -1.92 4.43 -26.73 -0.12 -2.04 16 16 C 0.17 2.90 2.89 -67.93 -0.20 2.70 16 17 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 18 C -0.16 -2.59 9.49 37.16 0.35 -2.24 16 19 N -0.71 -15.06 3.84 -53.43 -0.21 -15.27 16 20 C -0.19 -4.64 9.93 -15.06 -0.15 -4.79 16 21 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 22 C -0.03 -0.63 5.50 -17.43 -0.10 -0.73 16 23 N -0.90 -21.78 10.18 55.49 0.56 -21.21 16 24 Si 0.90 21.29 29.55 -169.99 -5.02 16.26 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 S 0.32 6.10 19.39 -107.50 -2.08 4.01 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.09 1.74 6.01 -51.93 -0.31 1.43 16 39 H 0.40 7.32 5.69 -40.82 -0.23 7.09 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.38 8.16 5.71 -40.82 -0.23 7.93 16 49 H 0.26 6.21 8.21 -40.82 -0.33 5.88 16 LS Contribution 403.29 15.07 6.08 6.08 Total: -1.00 -27.37 403.29 -9.84 -37.21 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -8.32 Total: 13.26 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -0.63 Total: -4.89 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: 0.07 Total: -59.59 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.07 Total: -12.35 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 6.10 SS G_CDS: -2.08 Total: 4.01 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -27.37 -9.84 -37.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146315553.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.710 kcal (2) G-P(sol) polarization free energy of solvation -27.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds