Wall clock time and date at job start Tue Mar 31 2020 23:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 5 5 N 1.29427 * 124.80190 * 90.02430 * 4 3 2 6 6 C 1.30947 * 117.36498 * 179.97438 * 5 4 3 7 7 C 1.50697 * 122.90709 * 180.02562 * 6 5 4 8 8 C 1.35666 * 114.19107 * 359.97438 * 6 5 4 9 9 C 1.46681 * 126.13307 * 180.02562 * 8 6 5 10 10 O 1.21684 * 119.99556 * 359.97438 * 9 8 6 11 11 N 1.34781 * 119.99894 * 179.97438 * 9 8 6 12 12 C 1.46499 * 119.99575 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47125 * 325.00118 * 12 11 9 14 14 C 1.52995 * 109.47048 * 85.00042 * 12 11 9 15 15 C 1.52999 * 109.46805 * 204.99869 * 12 11 9 16 16 C 1.53001 * 109.47085 * 65.00240 * 15 12 11 17 17 H 1.09002 * 109.47370 * 304.99597 * 16 15 12 18 18 C 1.53000 * 109.47140 * 184.99994 * 16 15 12 19 19 N 1.46499 * 109.47235 * 65.00048 * 16 15 12 20 20 C 1.36942 * 119.99945 * 205.00084 * 19 16 15 21 21 H 1.07997 * 120.00115 * 0.02562 * 20 19 16 22 22 C 1.38809 * 119.99843 * 179.97438 * 20 19 16 23 23 N 1.31622 * 120.00249 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99985 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47293 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47363 * 119.99909 * 24 22 20 27 27 H 1.48499 * 109.47454 * 239.99937 * 24 22 20 28 28 S 1.70952 * 124.80553 * 269.72259 * 4 3 2 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 34 34 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 35 35 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 36 36 H 1.08994 * 109.47726 * 89.97218 * 7 6 5 37 37 H 1.09001 * 109.46825 * 209.97571 * 7 6 5 38 38 H 1.09010 * 109.46961 * 329.96656 * 7 6 5 39 39 H 0.97000 * 120.00046 * 359.97438 * 11 9 8 40 40 H 1.08994 * 109.47263 * 179.97438 * 14 12 11 41 41 H 1.08998 * 109.47515 * 299.99455 * 14 12 11 42 42 H 1.09000 * 109.47095 * 60.00058 * 14 12 11 43 43 H 1.09001 * 109.46802 * 184.99861 * 15 12 11 44 44 H 1.09001 * 109.47346 * 305.00027 * 15 12 11 45 45 H 1.09005 * 109.47295 * 180.02562 * 18 16 15 46 46 H 1.09001 * 109.47350 * 299.99741 * 18 16 15 47 47 H 1.08997 * 109.47355 * 60.00094 * 18 16 15 48 48 H 0.97003 * 120.00326 * 24.99610 * 19 16 15 49 49 H 0.96993 * 119.99959 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.2852 1.4432 -1.0637 6 6 5.5837 1.4438 -0.8948 7 6 6.5588 1.4451 -2.0438 8 6 5.9753 1.4441 0.4041 9 6 7.3593 1.4452 0.8903 10 8 8.2825 1.4455 0.0976 11 7 7.6082 1.4459 2.2149 12 6 8.9904 1.4465 2.7003 13 1 9.6123 0.8568 2.0268 14 6 9.5129 2.8836 2.7500 15 6 9.0385 0.8376 4.1031 16 6 8.6346 -0.6365 4.0333 17 1 7.6590 -0.7238 3.5549 18 6 8.5617 -1.2129 5.4487 19 7 9.6287 -1.3789 3.2544 20 6 9.2744 -2.5406 2.6217 21 1 8.2621 -2.9093 2.6967 22 6 10.2162 -3.2438 1.8832 23 7 11.4496 -2.7937 1.7906 24 14 9.7328 -4.8280 1.0196 25 1 8.2988 -5.1148 1.2776 26 1 9.9538 -4.6826 -0.4416 27 1 10.5616 -5.9465 1.5367 28 16 4.5233 1.4492 1.4026 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 6.7931 2.4730 -2.3204 37 1 7.4729 0.9319 -1.7451 38 1 6.1158 0.9311 -2.8969 39 1 6.8722 1.4461 2.8467 40 1 10.5411 2.8841 3.1116 41 1 9.4788 3.3174 1.7506 42 1 8.8910 3.4732 3.4236 43 1 10.0505 0.9186 4.4999 44 1 8.3485 1.3729 4.7554 45 1 8.2744 -2.2632 5.3990 46 1 9.5371 -1.1258 5.9273 47 1 7.8220 -0.6606 6.0283 48 1 10.5378 -1.0476 3.1867 49 1 12.1078 -3.2852 1.2748 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146315554.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:59 Heat of formation + Delta-G solvation = -9.030644 kcal Electronic energy + Delta-G solvation = -27724.419450 eV Core-core repulsion = 24005.704032 eV Total energy + Delta-G solvation = -3718.715418 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.37685 -39.20316 -36.84123 -35.55016 -34.47594 -32.22250 -31.84418 -30.84706 -28.60212 -28.38416 -27.92404 -26.31634 -23.63506 -23.53591 -22.50403 -21.60353 -20.66090 -19.77693 -19.45363 -17.97900 -17.25375 -16.74699 -15.88144 -15.42162 -15.33195 -14.96812 -14.69439 -14.31400 -13.97613 -13.82329 -13.76533 -13.64559 -13.43995 -12.97560 -12.71694 -12.59645 -12.45639 -12.35666 -12.14867 -12.00648 -11.90955 -11.73250 -11.58519 -11.53675 -11.36150 -11.09699 -11.03745 -10.82238 -10.60509 -10.43323 -10.19467 -9.97447 -9.87556 -9.61047 -9.57746 -9.53957 -8.87392 -8.85782 -8.66756 -6.89777 -5.70823 -2.98681 0.20676 1.08366 1.49209 2.43861 3.28423 3.41845 3.46945 3.52307 3.54528 3.80392 4.53663 4.63381 4.64406 4.69251 4.90433 5.06395 5.12204 5.15585 5.21393 5.33510 5.40449 5.40863 5.48465 5.63437 5.68272 5.68981 5.74864 5.76684 5.84683 5.88269 5.92210 5.93683 5.94162 6.01681 6.12875 6.28479 6.34837 6.41437 6.45000 6.56941 6.70351 6.78983 6.91478 7.07949 7.52904 7.71270 7.75271 8.41589 8.47618 9.59111 10.15983 10.50368 11.51960 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009267 B = 0.003590 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3020.610502 B = 7796.837653 C = 8627.176883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.045 4.045 4 C 0.061 3.939 5 N -0.475 5.475 6 C 0.145 3.855 7 C -0.090 4.090 8 C -0.287 4.287 9 C 0.597 3.403 10 O -0.513 6.513 11 N -0.710 5.710 12 C 0.145 3.855 13 H 0.109 0.891 14 C -0.161 4.161 15 C -0.132 4.132 16 C 0.171 3.829 17 H 0.044 0.956 18 C -0.165 4.165 19 N -0.720 5.720 20 C -0.233 4.233 21 H 0.067 0.933 22 C -0.011 4.011 23 N -0.931 5.931 24 Si 0.901 3.099 25 H -0.282 1.282 26 H -0.292 1.292 27 H -0.292 1.292 28 S 0.151 5.849 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.072 0.928 39 H 0.391 0.609 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.050 0.950 43 H 0.078 0.922 44 H 0.061 0.939 45 H 0.052 0.948 46 H 0.046 0.954 47 H 0.034 0.966 48 H 0.383 0.617 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.775 13.309 1.175 23.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.086 4.086 4 C -0.215 4.215 5 N -0.190 5.190 6 C 0.008 3.992 7 C -0.149 4.149 8 C -0.410 4.410 9 C 0.382 3.618 10 O -0.391 6.391 11 N -0.360 5.360 12 C 0.041 3.959 13 H 0.127 0.873 14 C -0.219 4.219 15 C -0.170 4.170 16 C 0.061 3.939 17 H 0.062 0.938 18 C -0.225 4.225 19 N -0.362 5.362 20 C -0.365 4.365 21 H 0.085 0.915 22 C -0.207 4.207 23 N -0.579 5.579 24 Si 0.733 3.267 25 H -0.207 1.207 26 H -0.219 1.219 27 H -0.220 1.220 28 S 0.409 5.591 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.123 0.877 38 H 0.091 0.909 39 H 0.224 0.776 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.096 0.904 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.053 0.947 48 H 0.217 0.783 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -18.654 13.176 1.145 22.867 hybrid contribution 0.255 -0.921 -0.784 1.236 sum -18.398 12.255 0.362 22.109 Atomic orbital electron populations 1.21754 0.94817 1.02211 1.02008 1.21556 0.96331 0.94792 1.03307 1.20394 0.84538 0.99138 1.04483 1.27323 1.01583 1.01389 0.91162 1.66061 1.04500 1.17177 1.31247 1.20666 0.89735 0.94929 0.93839 1.20681 0.97302 1.03490 0.93427 1.25579 0.98046 1.20354 0.97067 1.16577 0.85657 0.76718 0.82887 1.90808 1.44066 1.49487 1.54692 1.45870 1.09366 1.75040 1.05757 1.21093 0.81847 0.96074 0.96882 0.87311 1.22187 1.01177 0.96702 1.01880 1.22184 1.02566 0.97481 0.94802 1.20218 0.93825 0.88755 0.91081 0.93796 1.22455 1.00000 1.01213 0.98868 1.42395 1.09343 1.25953 1.58469 1.19189 0.95248 0.98818 1.23220 0.91529 1.24680 0.95783 0.99179 1.01081 1.69653 1.02412 1.40189 1.45656 0.86204 0.77368 0.83697 0.79467 1.20744 1.21875 1.21952 1.83732 0.96850 1.66731 1.11824 0.92421 0.92217 0.92488 0.91410 0.91028 0.88530 0.89414 0.90292 0.87712 0.90899 0.77580 0.91523 0.92419 0.93136 0.90375 0.92050 0.92889 0.93480 0.94723 0.78318 0.93650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.16 0.37 -0.50 16 2 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 3 C -0.04 -0.35 5.79 -27.89 -0.16 -0.51 16 4 C 0.06 0.70 6.64 -13.29 -0.09 0.61 16 5 N -0.48 -6.68 10.50 -7.70 -0.08 -6.76 16 6 C 0.15 2.23 6.79 -83.89 -0.57 1.66 16 7 C -0.09 -1.31 9.70 36.00 0.35 -0.96 16 8 C -0.29 -4.39 6.48 -37.09 -0.24 -4.63 16 9 C 0.60 10.44 7.74 -12.85 -0.10 10.34 16 10 O -0.51 -10.63 13.93 5.20 0.07 -10.56 16 11 N -0.71 -10.91 4.44 -55.12 -0.24 -11.16 16 12 C 0.14 2.35 2.52 -67.93 -0.17 2.18 16 13 H 0.11 2.30 7.05 -51.93 -0.37 1.93 16 14 C -0.16 -2.20 9.48 37.16 0.35 -1.85 16 15 C -0.13 -2.00 4.29 -26.73 -0.11 -2.12 16 16 C 0.17 3.25 2.84 -67.93 -0.19 3.06 16 17 H 0.04 0.87 7.56 -51.93 -0.39 0.47 16 18 C -0.17 -2.88 9.49 37.16 0.35 -2.53 16 19 N -0.72 -17.65 4.49 -53.42 -0.24 -17.89 16 20 C -0.23 -6.51 9.93 -15.06 -0.15 -6.66 16 21 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 22 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 23 N -0.93 -28.48 13.06 55.49 0.72 -27.75 16 24 Si 0.90 23.09 29.55 -169.99 -5.02 18.07 16 25 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 27 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 28 S 0.15 1.71 22.31 -107.50 -2.40 -0.69 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.10 1.77 6.01 -51.93 -0.31 1.46 16 38 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 39 H 0.39 5.03 7.79 -40.82 -0.32 4.72 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.38 10.05 7.80 -40.82 -0.32 9.73 16 49 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 413.38 15.07 6.23 6.23 Total: -1.00 -33.15 413.38 -10.02 -43.17 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -8.44 Total: 10.75 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -0.62 Total: -3.41 kcal Atomic # 7 Polarization: -63.71 SS G_CDS: 0.16 Total: -63.55 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.07 Total: -10.56 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.07 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.40 Total: -0.69 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.15 -10.02 -43.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146315554.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.135 kcal (2) G-P(sol) polarization free energy of solvation -33.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds