Wall clock time and date at job start Tue Mar 31 2020 23:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 5 5 N 1.29427 * 124.80190 * 90.02430 * 4 3 2 6 6 C 1.30947 * 117.36498 * 179.97438 * 5 4 3 7 7 C 1.50697 * 122.90709 * 180.02562 * 6 5 4 8 8 C 1.35666 * 114.19107 * 359.97438 * 6 5 4 9 9 C 1.46681 * 126.13307 * 180.02562 * 8 6 5 10 10 O 1.21684 * 119.99556 * 359.97438 * 9 8 6 11 11 N 1.34781 * 119.99894 * 179.97438 * 9 8 6 12 12 C 1.46499 * 119.99575 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47125 * 325.00118 * 12 11 9 14 14 C 1.52995 * 109.47048 * 85.00042 * 12 11 9 15 15 C 1.52999 * 109.46805 * 204.99869 * 12 11 9 16 16 C 1.53001 * 109.47085 * 65.00240 * 15 12 11 17 17 H 1.09002 * 109.47370 * 304.99597 * 16 15 12 18 18 C 1.53000 * 109.47140 * 184.99994 * 16 15 12 19 19 N 1.46499 * 109.47235 * 65.00048 * 16 15 12 20 20 C 1.36942 * 119.99945 * 205.00084 * 19 16 15 21 21 H 1.07997 * 120.00115 * 0.02562 * 20 19 16 22 22 C 1.38809 * 119.99843 * 179.97438 * 20 19 16 23 23 N 1.31622 * 120.00249 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99985 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47293 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47363 * 119.99909 * 24 22 20 27 27 H 1.48499 * 109.47454 * 239.99937 * 24 22 20 28 28 S 1.70952 * 124.80553 * 269.72259 * 4 3 2 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 34 34 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 35 35 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 36 36 H 1.08994 * 109.47726 * 89.97218 * 7 6 5 37 37 H 1.09001 * 109.46825 * 209.97571 * 7 6 5 38 38 H 1.09010 * 109.46961 * 329.96656 * 7 6 5 39 39 H 0.97000 * 120.00046 * 359.97438 * 11 9 8 40 40 H 1.08994 * 109.47263 * 179.97438 * 14 12 11 41 41 H 1.08998 * 109.47515 * 299.99455 * 14 12 11 42 42 H 1.09000 * 109.47095 * 60.00058 * 14 12 11 43 43 H 1.09001 * 109.46802 * 184.99861 * 15 12 11 44 44 H 1.09001 * 109.47346 * 305.00027 * 15 12 11 45 45 H 1.09005 * 109.47295 * 180.02562 * 18 16 15 46 46 H 1.09001 * 109.47350 * 299.99741 * 18 16 15 47 47 H 1.08997 * 109.47355 * 60.00094 * 18 16 15 48 48 H 0.97003 * 120.00326 * 24.99610 * 19 16 15 49 49 H 0.96993 * 119.99959 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.2852 1.4432 -1.0637 6 6 5.5837 1.4438 -0.8948 7 6 6.5588 1.4451 -2.0438 8 6 5.9753 1.4441 0.4041 9 6 7.3593 1.4452 0.8903 10 8 8.2825 1.4455 0.0976 11 7 7.6082 1.4459 2.2149 12 6 8.9904 1.4465 2.7003 13 1 9.6123 0.8568 2.0268 14 6 9.5129 2.8836 2.7500 15 6 9.0385 0.8376 4.1031 16 6 8.6346 -0.6365 4.0333 17 1 7.6590 -0.7238 3.5549 18 6 8.5617 -1.2129 5.4487 19 7 9.6287 -1.3789 3.2544 20 6 9.2744 -2.5406 2.6217 21 1 8.2621 -2.9093 2.6967 22 6 10.2162 -3.2438 1.8832 23 7 11.4496 -2.7937 1.7906 24 14 9.7328 -4.8280 1.0196 25 1 8.2988 -5.1148 1.2776 26 1 9.9538 -4.6826 -0.4416 27 1 10.5616 -5.9465 1.5367 28 16 4.5233 1.4492 1.4026 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 6.7931 2.4730 -2.3204 37 1 7.4729 0.9319 -1.7451 38 1 6.1158 0.9311 -2.8969 39 1 6.8722 1.4461 2.8467 40 1 10.5411 2.8841 3.1116 41 1 9.4788 3.3174 1.7506 42 1 8.8910 3.4732 3.4236 43 1 10.0505 0.9186 4.4999 44 1 8.3485 1.3729 4.7554 45 1 8.2744 -2.2632 5.3990 46 1 9.5371 -1.1258 5.9273 47 1 7.8220 -0.6606 6.0283 48 1 10.5378 -1.0476 3.1867 49 1 12.1078 -3.2852 1.2748 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146315554.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:58 Heat of formation + Delta-G solvation = -30.459087 kcal Electronic energy + Delta-G solvation = -27725.348657 eV Core-core repulsion = 24005.704032 eV Total energy + Delta-G solvation = -3719.644625 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.51706 -40.43691 -38.32382 -36.28829 -36.05990 -34.06694 -32.91702 -32.17949 -30.45224 -29.25150 -28.94652 -27.60314 -25.68428 -24.39685 -23.71478 -22.26324 -22.02848 -21.26329 -20.64748 -19.28521 -19.00672 -17.95179 -17.18777 -16.73472 -16.49649 -16.03252 -15.84839 -15.67256 -15.62312 -15.25504 -14.95832 -14.72665 -14.53894 -14.33466 -14.18203 -13.65303 -13.61473 -13.41564 -13.34600 -13.18130 -13.00827 -12.95015 -12.81782 -12.68514 -12.58625 -12.43842 -12.25874 -12.16815 -12.11256 -11.84902 -11.66201 -11.57704 -11.44618 -11.13387 -10.93710 -10.75616 -10.59800 -10.10172 -9.74968 -8.95408 -7.93176 -5.18182 -0.84332 0.10163 0.47061 1.33675 1.40381 1.42563 1.50342 2.02646 2.16458 2.54611 2.90634 3.41436 3.69692 3.74211 3.83223 3.98328 4.03029 4.05615 4.08177 4.14249 4.37948 4.44640 4.52683 4.61448 4.64438 4.66187 4.69979 4.77634 4.78902 4.82006 4.83165 4.91407 4.92744 5.02313 5.09853 5.18161 5.22288 5.24106 5.28954 5.33385 5.40397 5.43985 5.49663 5.58762 5.63309 6.30371 6.41005 6.56726 7.14962 7.36294 8.16231 8.36107 9.30698 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009267 B = 0.003590 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3020.610502 B = 7796.837653 C = 8627.176883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C -0.045 4.045 4 C 0.067 3.933 5 N -0.499 5.499 6 C 0.137 3.863 7 C -0.087 4.087 8 C -0.327 4.327 9 C 0.590 3.410 10 O -0.560 6.560 11 N -0.699 5.699 12 C 0.147 3.853 13 H 0.052 0.948 14 C -0.151 4.151 15 C -0.119 4.119 16 C 0.163 3.837 17 H 0.038 0.962 18 C -0.156 4.156 19 N -0.731 5.731 20 C -0.224 4.224 21 H 0.068 0.932 22 C -0.076 4.076 23 N -0.967 5.967 24 Si 0.958 3.042 25 H -0.269 1.269 26 H -0.301 1.301 27 H -0.290 1.290 28 S 0.218 5.782 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.105 0.895 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.405 0.595 40 H 0.074 0.926 41 H 0.038 0.962 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.107 0.893 45 H 0.029 0.971 46 H 0.043 0.957 47 H 0.077 0.923 48 H 0.371 0.629 49 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.163 14.500 3.406 26.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C -0.086 4.086 4 C -0.208 4.208 5 N -0.214 5.214 6 C -0.002 4.002 7 C -0.146 4.146 8 C -0.451 4.451 9 C 0.376 3.624 10 O -0.441 6.441 11 N -0.350 5.350 12 C 0.043 3.957 13 H 0.070 0.930 14 C -0.209 4.209 15 C -0.157 4.157 16 C 0.055 3.945 17 H 0.056 0.944 18 C -0.216 4.216 19 N -0.371 5.371 20 C -0.356 4.356 21 H 0.085 0.915 22 C -0.268 4.268 23 N -0.618 5.618 24 Si 0.788 3.212 25 H -0.193 1.193 26 H -0.229 1.229 27 H -0.218 1.218 28 S 0.476 5.524 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.124 0.876 35 H 0.136 0.864 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.241 0.759 40 H 0.093 0.907 41 H 0.058 0.942 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.125 0.875 45 H 0.048 0.952 46 H 0.063 0.937 47 H 0.096 0.904 48 H 0.203 0.797 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -22.117 14.380 3.455 26.606 hybrid contribution 1.154 -1.240 -1.420 2.210 sum -20.963 13.140 2.035 24.825 Atomic orbital electron populations 1.21731 0.93142 1.02551 1.02990 1.21545 0.97734 0.94316 1.02300 1.20653 0.81798 0.99664 1.06445 1.28098 1.03176 0.98650 0.90896 1.66120 1.03900 1.18908 1.32474 1.20785 0.90533 0.94810 0.94030 1.20575 0.96254 1.03802 0.93933 1.25476 0.98665 1.22648 0.98341 1.16957 0.86310 0.75994 0.83118 1.90781 1.45824 1.51613 1.55835 1.45757 1.09558 1.74252 1.05464 1.20930 0.81537 0.97029 0.96215 0.92959 1.22087 1.02212 0.94959 1.01679 1.22106 1.03963 0.94941 0.94737 1.20514 0.92123 0.90675 0.91163 0.94377 1.22301 1.01180 1.00233 0.97842 1.42590 1.09913 1.25559 1.59035 1.19504 0.94912 0.99351 1.21872 0.91453 1.25390 0.96062 1.02432 1.02931 1.69794 1.03324 1.41532 1.47193 0.85290 0.77676 0.80530 0.77692 1.19314 1.22883 1.21757 1.83338 0.93682 1.65415 1.09937 0.91920 0.92261 0.91035 0.91606 0.92948 0.87649 0.86354 0.89362 0.90677 0.89872 0.75889 0.90747 0.94244 0.89955 0.90021 0.87490 0.95184 0.93735 0.90417 0.79727 0.94370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 71.98 0.71 -0.57 16 2 C -0.12 -1.54 5.92 30.59 0.18 -1.36 16 3 C -0.04 -0.56 5.79 29.85 0.17 -0.39 16 4 C 0.07 1.39 6.64 88.46 0.59 1.97 16 5 N -0.50 -13.64 10.50 -178.29 -1.87 -15.51 16 6 C 0.14 4.25 6.79 42.09 0.29 4.54 16 7 C -0.09 -2.67 9.70 71.24 0.69 -1.98 16 8 C -0.33 -10.02 6.48 23.88 0.15 -9.87 16 9 C 0.59 21.25 7.74 86.45 0.67 21.92 16 10 O -0.56 -24.84 13.93 -4.30 -0.06 -24.90 16 11 N -0.70 -21.10 4.44 -446.51 -1.98 -23.08 16 12 C 0.15 4.74 2.52 44.99 0.11 4.85 16 13 H 0.05 2.33 7.05 -2.39 -0.02 2.31 16 14 C -0.15 -3.96 9.48 71.98 0.68 -3.28 16 15 C -0.12 -3.35 4.29 30.59 0.13 -3.22 16 16 C 0.16 5.98 2.84 44.99 0.13 6.10 16 17 H 0.04 1.44 7.56 -2.39 -0.02 1.43 16 18 C -0.16 -5.03 9.49 71.98 0.68 -4.35 16 19 N -0.73 -36.38 4.49 -322.94 -1.45 -37.84 16 20 C -0.22 -12.70 9.93 84.03 0.83 -11.86 16 21 H 0.07 3.74 7.83 -2.91 -0.02 3.71 16 22 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 23 N -0.97 -61.31 13.06 21.65 0.28 -61.03 16 24 Si 0.96 48.58 29.55 68.60 2.03 50.61 16 25 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 26 H -0.30 -15.60 7.11 99.48 0.71 -14.89 16 27 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 28 S 0.22 4.41 22.31 -56.49 -1.26 3.15 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.07 2.78 6.01 -2.39 -0.01 2.77 16 38 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 39 H 0.40 9.53 7.79 -92.71 -0.72 8.81 16 40 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 43 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 46 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.37 20.11 7.80 -92.71 -0.72 19.39 16 49 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -76.63 413.38 1.68 -74.95 By element: Atomic # 1 Polarization: 35.70 SS G_CDS: -0.50 Total: 35.20 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: 6.49 Total: -1.56 kcal Atomic # 7 Polarization: -132.44 SS G_CDS: -5.02 Total: -137.46 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.06 Total: -24.90 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 2.03 Total: 50.61 kcal Atomic # 16 Polarization: 4.41 SS G_CDS: -1.26 Total: 3.15 kcal Total: -76.63 1.68 -74.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146315554.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.495 kcal (2) G-P(sol) polarization free energy of solvation -76.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds