Wall clock time and date at job start Tue Mar 31 2020 23:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46839 * 2 1 4 4 C 1.53005 * 109.46904 * 240.00147 * 2 1 3 5 5 O 1.45194 * 109.47176 * 120.00050 * 2 1 3 6 6 C 1.34225 * 117.00353 * 59.99752 * 5 2 1 7 7 O 1.20833 * 119.99655 * 0.02562 * 6 5 2 8 8 C 1.50699 * 120.00393 * 179.97438 * 6 5 2 9 9 C 1.54394 * 112.70669 * 61.01795 * 8 6 5 10 10 O 1.44383 * 105.01400 * 146.62591 * 9 8 6 11 11 C 1.44376 * 105.25904 * 319.18294 * 10 9 8 12 12 C 1.54394 * 104.91844 * 40.76571 * 11 10 9 13 13 H 1.08994 * 112.70942 * 213.40953 * 12 11 10 14 14 C 1.54273 * 108.76791 * 87.01581 * 12 11 10 15 15 N 1.48524 * 104.70613 * 225.46652 * 14 12 11 16 16 C 1.34783 * 127.87492 * 219.84314 * 15 14 12 17 17 O 1.21279 * 120.00450 * 180.11786 * 16 15 14 18 18 C 1.50703 * 119.99434 * 0.12216 * 16 15 14 19 19 C 1.52994 * 109.46956 * 179.97438 * 18 16 15 20 20 C 1.50699 * 109.47581 * 179.97438 * 19 18 16 21 21 H 1.08007 * 119.99575 * 0.02562 * 20 19 18 22 22 C 1.37881 * 120.00499 * 179.97438 * 20 19 18 23 23 N 1.31511 * 119.99613 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00109 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47341 * 89.99824 * 24 22 20 26 26 H 1.48496 * 109.47088 * 209.99932 * 24 22 20 27 27 H 1.48499 * 109.47278 * 329.99984 * 24 22 20 28 28 C 1.48090 * 104.28256 * 39.94363 * 15 14 12 29 29 H 1.08999 * 109.46927 * 300.00029 * 1 2 3 30 30 H 1.09000 * 109.47174 * 59.99839 * 1 2 3 31 31 H 1.09000 * 109.47338 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46723 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46845 * 299.99997 * 3 2 1 34 34 H 1.08999 * 109.47384 * 60.00251 * 3 2 1 35 35 H 1.09003 * 109.46625 * 299.99955 * 4 2 1 36 36 H 1.08993 * 109.46921 * 59.99817 * 4 2 1 37 37 H 1.08997 * 109.46565 * 179.97438 * 4 2 1 38 38 H 1.09002 * 110.35172 * 27.70977 * 9 8 6 39 39 H 1.08997 * 110.34671 * 265.53615 * 9 8 6 40 40 H 1.08998 * 110.35219 * 159.62905 * 11 10 9 41 41 H 1.09000 * 110.34840 * 281.90932 * 11 10 9 42 42 H 1.09005 * 110.38210 * 344.26547 * 14 12 11 43 43 H 1.09002 * 110.38570 * 106.62370 * 14 12 11 44 44 H 1.09006 * 109.47060 * 299.99374 * 18 16 15 45 45 H 1.08997 * 109.47311 * 60.00092 * 18 16 15 46 46 H 1.09003 * 109.47361 * 300.00317 * 19 18 16 47 47 H 1.09010 * 109.47404 * 59.99744 * 19 18 16 48 48 H 0.97001 * 120.00130 * 180.02562 * 23 22 20 49 49 H 1.08998 * 110.38566 * 201.19493 * 28 15 14 50 50 H 1.09004 * 110.47620 * 78.88216 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6534 -1.9683 1.3379 7 8 0.9566 -2.5027 0.5078 8 6 2.1183 -2.7437 2.5436 9 6 1.6223 -2.1334 3.8722 10 8 1.4170 -3.2622 4.7487 11 6 0.8130 -4.2802 3.9221 12 6 1.5686 -4.2008 2.5780 13 1 0.9331 -4.4339 1.7237 14 6 2.8254 -5.0915 2.6617 15 7 3.9150 -4.2609 2.0881 16 6 4.9171 -4.6554 1.2776 17 8 5.7379 -3.8502 0.8920 18 6 5.0173 -6.0972 0.8505 19 6 6.2338 -6.2758 -0.0600 20 6 6.3345 -7.7176 -0.4867 21 1 5.6037 -8.4348 -0.1431 22 6 7.3590 -8.1211 -1.3166 23 7 8.2486 -7.2477 -1.7354 24 14 7.4834 -9.9081 -1.8460 25 1 6.7196 -10.1061 -3.1040 26 1 8.9085 -10.2595 -2.0717 27 1 6.9211 -10.7796 -0.7832 28 6 3.6516 -2.9008 2.6112 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2495 38 1 0.6853 -1.5985 3.7172 39 1 2.3761 -1.4640 4.2866 40 1 0.9455 -5.2633 4.3739 41 1 -0.2462 -4.0695 3.7745 42 1 3.0450 -5.3417 3.6997 43 1 2.6881 -5.9983 2.0726 44 1 5.1262 -6.7303 1.7312 45 1 4.1143 -6.3795 0.3093 46 1 6.1246 -5.6427 -0.9406 47 1 7.1371 -5.9933 0.4807 48 1 8.9692 -7.5314 -2.3195 49 1 4.1378 -2.1525 1.9853 50 1 3.9968 -2.8150 3.6416 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146697223.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:12 Heat of formation + Delta-G solvation = -164.610280 kcal Electronic energy + Delta-G solvation = -31399.107117 eV Core-core repulsion = 27198.599638 eV Total energy + Delta-G solvation = -4200.507480 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.77293 -40.29412 -38.73437 -37.19991 -36.01046 -34.40295 -33.48365 -32.03236 -31.20605 -30.79730 -27.70952 -27.61753 -26.81724 -26.15754 -24.76866 -24.34243 -22.43449 -21.36359 -20.56829 -19.44792 -18.84877 -17.90734 -16.98637 -16.80301 -16.41324 -15.97176 -15.95410 -15.83790 -15.50818 -15.10624 -14.88501 -14.55050 -14.41272 -14.00169 -13.88352 -13.62383 -13.43245 -12.80326 -12.63514 -12.48224 -12.36163 -12.27636 -12.23437 -12.16611 -12.14353 -12.08616 -11.71385 -11.64904 -11.38554 -11.29823 -11.29098 -11.10237 -10.92950 -10.64356 -10.59529 -10.29205 -10.13260 -9.96901 -9.66529 -9.21144 -9.04190 -8.61439 -8.31914 -5.96045 -4.00503 1.90305 2.27612 3.07855 3.14873 3.33577 3.39637 3.42278 3.56932 3.64468 4.11335 4.34694 4.40014 4.44062 4.47250 4.48561 4.62999 4.63408 4.68258 5.00277 5.10678 5.16495 5.18916 5.28402 5.29581 5.31154 5.33918 5.38167 5.38946 5.42305 5.51816 5.52364 5.60361 5.63057 5.69541 5.73097 5.78334 5.94331 6.10751 6.14962 6.20443 6.26698 6.29386 6.35280 6.86834 7.54844 7.73876 7.78384 7.84973 8.06475 8.37390 8.66967 9.07447 9.62952 11.14956 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.012540 B = 0.003037 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.299301 B = 9218.467401 C =10524.453286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.117 3.883 3 C -0.141 4.141 4 C -0.186 4.186 5 O -0.345 6.345 6 C 0.492 3.508 7 O -0.491 6.491 8 C -0.107 4.107 9 C 0.069 3.931 10 O -0.361 6.361 11 C 0.051 3.949 12 C -0.122 4.122 13 H 0.122 0.878 14 C 0.110 3.890 15 N -0.634 5.634 16 C 0.534 3.466 17 O -0.529 6.529 18 C -0.123 4.123 19 C 0.037 3.963 20 C -0.527 4.527 21 H 0.056 0.944 22 C 0.058 3.942 23 N -0.889 5.889 24 Si 0.893 3.107 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.274 1.274 28 C 0.123 3.877 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.023 0.977 47 H 0.024 0.976 48 H 0.261 0.739 49 H 0.090 0.910 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.837 14.971 10.885 27.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.081 3.919 3 C -0.198 4.198 4 C -0.243 4.243 5 O -0.263 6.263 6 C 0.334 3.666 7 O -0.378 6.378 8 C -0.110 4.110 9 C -0.009 4.009 10 O -0.279 6.279 11 C -0.026 4.026 12 C -0.142 4.142 13 H 0.140 0.860 14 C -0.013 4.013 15 N -0.371 5.371 16 C 0.325 3.675 17 O -0.403 6.403 18 C -0.163 4.163 19 C 0.000 4.000 20 C -0.565 4.565 21 H 0.074 0.926 22 C -0.144 4.144 23 N -0.528 5.528 24 Si 0.721 3.279 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.199 1.199 28 C 0.000 4.000 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.128 0.872 40 H 0.123 0.877 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.110 0.890 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.041 0.959 47 H 0.042 0.958 48 H 0.071 0.929 49 H 0.108 0.892 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -19.242 15.237 10.417 26.663 hybrid contribution -0.087 -0.872 -0.750 1.153 sum -19.328 14.364 9.667 25.950 Atomic orbital electron populations 1.22490 0.94011 1.04654 1.02754 1.22250 0.94276 0.92362 0.82963 1.21858 1.02624 0.92317 1.02985 1.22506 1.02353 1.03049 0.96359 1.86524 1.69694 1.24770 1.45287 1.22544 0.77035 0.80618 0.86354 1.90580 1.35083 1.69755 1.42366 1.22771 0.99551 0.95594 0.93056 1.23307 1.01232 0.89703 0.86648 1.89181 1.81859 1.24437 1.32468 1.23524 0.96578 0.93489 0.89031 1.23688 0.98240 0.91701 1.00552 0.86039 1.22513 0.84430 0.94650 0.99735 1.49366 1.28712 1.09038 1.50024 1.21392 0.78189 0.92367 0.75517 1.90685 1.39721 1.55514 1.54399 1.21867 1.03811 0.88870 1.01778 1.18916 0.90668 0.96576 0.93882 1.21198 1.11390 0.94178 1.29722 0.92588 1.25024 0.95713 0.97470 0.96165 1.69998 1.14692 1.33875 1.34237 0.86582 0.77218 0.85143 0.78959 1.20674 1.21213 1.19859 1.22157 0.89685 0.87322 1.00874 0.92043 0.90895 0.89889 0.91170 0.90250 0.91481 0.89804 0.90923 0.91519 0.91529 0.87217 0.87655 0.91509 0.90070 0.89009 0.90105 0.90226 0.95863 0.95758 0.92941 0.89158 0.89358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 8.37 37.16 0.31 -1.30 16 2 C 0.12 1.19 1.13 -90.61 -0.10 1.08 16 3 C -0.14 -1.08 8.85 37.16 0.33 -0.75 16 4 C -0.19 -2.14 8.37 37.16 0.31 -1.83 16 5 O -0.35 -4.01 9.87 -39.24 -0.39 -4.40 16 6 C 0.49 6.07 6.03 36.01 0.22 6.29 16 7 O -0.49 -6.86 11.15 -18.76 -0.21 -7.07 16 8 C -0.11 -1.15 1.03 -152.78 -0.16 -1.31 16 9 C 0.07 0.58 6.44 37.89 0.24 0.83 16 10 O -0.36 -3.40 11.65 -35.23 -0.41 -3.81 16 11 C 0.05 0.39 6.86 37.89 0.26 0.65 16 12 C -0.12 -1.21 3.76 -87.74 -0.33 -1.54 16 13 H 0.12 1.28 6.98 -51.93 -0.36 0.92 16 14 C 0.11 1.24 6.38 -2.26 -0.01 1.22 16 15 N -0.63 -9.75 3.32 -169.18 -0.56 -10.31 16 16 C 0.53 10.82 7.92 -10.98 -0.09 10.73 16 17 O -0.53 -12.91 16.24 5.56 0.09 -12.82 16 18 C -0.12 -2.58 4.62 -27.88 -0.13 -2.71 16 19 C 0.04 1.01 4.26 -27.89 -0.12 0.89 16 20 C -0.53 -15.06 9.11 -34.44 -0.31 -15.37 16 21 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 22 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 23 N -0.89 -27.60 13.29 55.43 0.74 -26.87 16 24 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 27 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 28 C 0.12 1.60 6.14 -2.50 -0.02 1.58 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.89 5.89 -51.93 -0.31 0.58 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 1.16 5.89 -51.93 -0.31 0.85 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.50 7.98 -51.93 -0.41 0.09 16 39 H 0.11 0.79 7.75 -51.93 -0.40 0.39 16 40 H 0.11 0.64 7.75 -51.93 -0.40 0.24 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.79 7.57 -51.93 -0.39 0.40 16 43 H 0.09 0.99 7.32 -51.93 -0.38 0.61 16 44 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 45 H 0.08 1.54 7.96 -51.93 -0.41 1.13 16 46 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 47 H 0.02 0.72 8.10 -51.92 -0.42 0.30 16 48 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 49 H 0.09 1.33 7.64 -51.93 -0.40 0.93 16 50 H 0.09 1.00 7.57 -51.93 -0.39 0.61 16 LS Contribution 396.94 15.07 5.98 5.98 Total: -1.00 -35.68 396.94 -7.83 -43.52 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -8.36 Total: -1.06 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 0.31 Total: 0.07 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.17 Total: -37.18 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.92 Total: -28.10 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.68 -7.83 -43.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146697223.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.094 kcal (2) G-P(sol) polarization free energy of solvation -35.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds