Wall clock time and date at job start Tue Mar 31 2020 23:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46839 * 2 1 4 4 C 1.53005 * 109.46904 * 240.00147 * 2 1 3 5 5 O 1.45194 * 109.47176 * 120.00050 * 2 1 3 6 6 C 1.34225 * 117.00353 * 59.99752 * 5 2 1 7 7 O 1.20833 * 119.99655 * 0.02562 * 6 5 2 8 8 C 1.50699 * 120.00393 * 179.97438 * 6 5 2 9 9 C 1.54394 * 112.70669 * 61.01795 * 8 6 5 10 10 O 1.44383 * 105.01400 * 146.62591 * 9 8 6 11 11 C 1.44376 * 105.25904 * 319.18294 * 10 9 8 12 12 C 1.54394 * 104.91844 * 40.76571 * 11 10 9 13 13 H 1.08994 * 112.70942 * 213.40953 * 12 11 10 14 14 C 1.54273 * 108.76791 * 87.01581 * 12 11 10 15 15 N 1.48524 * 104.70613 * 225.46652 * 14 12 11 16 16 C 1.34783 * 127.87492 * 219.84314 * 15 14 12 17 17 O 1.21279 * 120.00450 * 180.11786 * 16 15 14 18 18 C 1.50703 * 119.99434 * 0.12216 * 16 15 14 19 19 C 1.52994 * 109.46956 * 179.97438 * 18 16 15 20 20 C 1.50699 * 109.47581 * 179.97438 * 19 18 16 21 21 H 1.08007 * 119.99575 * 0.02562 * 20 19 18 22 22 C 1.37881 * 120.00499 * 179.97438 * 20 19 18 23 23 N 1.31511 * 119.99613 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00109 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47341 * 89.99824 * 24 22 20 26 26 H 1.48496 * 109.47088 * 209.99932 * 24 22 20 27 27 H 1.48499 * 109.47278 * 329.99984 * 24 22 20 28 28 C 1.48090 * 104.28256 * 39.94363 * 15 14 12 29 29 H 1.08999 * 109.46927 * 300.00029 * 1 2 3 30 30 H 1.09000 * 109.47174 * 59.99839 * 1 2 3 31 31 H 1.09000 * 109.47338 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46723 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46845 * 299.99997 * 3 2 1 34 34 H 1.08999 * 109.47384 * 60.00251 * 3 2 1 35 35 H 1.09003 * 109.46625 * 299.99955 * 4 2 1 36 36 H 1.08993 * 109.46921 * 59.99817 * 4 2 1 37 37 H 1.08997 * 109.46565 * 179.97438 * 4 2 1 38 38 H 1.09002 * 110.35172 * 27.70977 * 9 8 6 39 39 H 1.08997 * 110.34671 * 265.53615 * 9 8 6 40 40 H 1.08998 * 110.35219 * 159.62905 * 11 10 9 41 41 H 1.09000 * 110.34840 * 281.90932 * 11 10 9 42 42 H 1.09005 * 110.38210 * 344.26547 * 14 12 11 43 43 H 1.09002 * 110.38570 * 106.62370 * 14 12 11 44 44 H 1.09006 * 109.47060 * 299.99374 * 18 16 15 45 45 H 1.08997 * 109.47311 * 60.00092 * 18 16 15 46 46 H 1.09003 * 109.47361 * 300.00317 * 19 18 16 47 47 H 1.09010 * 109.47404 * 59.99744 * 19 18 16 48 48 H 0.97001 * 120.00130 * 180.02562 * 23 22 20 49 49 H 1.08998 * 110.38566 * 201.19493 * 28 15 14 50 50 H 1.09004 * 110.47620 * 78.88216 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6534 -1.9683 1.3379 7 8 0.9566 -2.5027 0.5078 8 6 2.1183 -2.7437 2.5436 9 6 1.6223 -2.1334 3.8722 10 8 1.4170 -3.2622 4.7487 11 6 0.8130 -4.2802 3.9221 12 6 1.5686 -4.2008 2.5780 13 1 0.9331 -4.4339 1.7237 14 6 2.8254 -5.0915 2.6617 15 7 3.9150 -4.2609 2.0881 16 6 4.9171 -4.6554 1.2776 17 8 5.7379 -3.8502 0.8920 18 6 5.0173 -6.0972 0.8505 19 6 6.2338 -6.2758 -0.0600 20 6 6.3345 -7.7176 -0.4867 21 1 5.6037 -8.4348 -0.1431 22 6 7.3590 -8.1211 -1.3166 23 7 8.2486 -7.2477 -1.7354 24 14 7.4834 -9.9081 -1.8460 25 1 6.7196 -10.1061 -3.1040 26 1 8.9085 -10.2595 -2.0717 27 1 6.9211 -10.7796 -0.7832 28 6 3.6516 -2.9008 2.6112 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2495 38 1 0.6853 -1.5985 3.7172 39 1 2.3761 -1.4640 4.2866 40 1 0.9455 -5.2633 4.3739 41 1 -0.2462 -4.0695 3.7745 42 1 3.0450 -5.3417 3.6997 43 1 2.6881 -5.9983 2.0726 44 1 5.1262 -6.7303 1.7312 45 1 4.1143 -6.3795 0.3093 46 1 6.1246 -5.6427 -0.9406 47 1 7.1371 -5.9933 0.4807 48 1 8.9692 -7.5314 -2.3195 49 1 4.1378 -2.1525 1.9853 50 1 3.9968 -2.8150 3.6416 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146697223.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:11 Heat of formation + Delta-G solvation = -188.196180 kcal Electronic energy + Delta-G solvation = -31400.129879 eV Core-core repulsion = 27198.599638 eV Total energy + Delta-G solvation = -4201.530241 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.68670 -41.25821 -40.13600 -38.10760 -37.13501 -35.62009 -35.24690 -33.40291 -32.53147 -32.03470 -28.50203 -28.36914 -28.36333 -27.14195 -26.29171 -25.23096 -23.44448 -23.09399 -21.41187 -20.40290 -20.23534 -18.98856 -18.59924 -17.83282 -17.54186 -17.39388 -16.93293 -16.69741 -16.63107 -16.42856 -16.29922 -15.83526 -15.43766 -15.11171 -14.98091 -14.70648 -14.46835 -14.26229 -13.91788 -13.67386 -13.46561 -13.35581 -13.25045 -13.14206 -13.03486 -13.02110 -12.94057 -12.83547 -12.58049 -12.50513 -12.43384 -12.16899 -12.13371 -12.09095 -11.97016 -11.64520 -11.49863 -11.34519 -11.15814 -11.02126 -10.66741 -10.59128 -9.89324 -8.19862 -6.34391 0.94425 1.40947 1.42424 1.44118 1.55059 1.57774 1.82201 2.41686 2.78114 2.89796 3.13109 3.20974 3.51737 3.59762 3.65997 3.70563 3.81915 3.86863 3.87557 3.93114 4.21375 4.33910 4.40472 4.41967 4.46713 4.48096 4.51973 4.54710 4.57197 4.68024 4.69070 4.70138 4.75807 4.79743 4.82148 4.86557 4.91871 4.98483 5.05111 5.16745 5.18554 5.21406 5.41422 5.46260 5.57124 5.64941 5.81223 6.13961 6.38288 6.61368 6.83193 7.11455 7.35921 8.93024 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.012540 B = 0.003037 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.299301 B = 9218.467401 C =10524.453286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.107 3.893 3 C -0.137 4.137 4 C -0.184 4.184 5 O -0.351 6.351 6 C 0.487 3.513 7 O -0.512 6.512 8 C -0.106 4.106 9 C 0.075 3.925 10 O -0.370 6.370 11 C 0.056 3.944 12 C -0.118 4.118 13 H 0.114 0.886 14 C 0.103 3.897 15 N -0.631 5.631 16 C 0.531 3.469 17 O -0.587 6.587 18 C -0.110 4.110 19 C 0.044 3.956 20 C -0.543 4.543 21 H 0.077 0.923 22 C -0.007 4.007 23 N -0.938 5.938 24 Si 0.976 3.024 25 H -0.272 1.272 26 H -0.285 1.285 27 H -0.253 1.253 28 C 0.121 3.879 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.094 0.906 37 H 0.045 0.955 38 H 0.080 0.920 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.082 0.918 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.107 0.893 45 H 0.099 0.901 46 H -0.022 1.022 47 H -0.016 1.016 48 H 0.263 0.737 49 H 0.064 0.936 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.533 14.084 12.703 29.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.072 3.928 3 C -0.194 4.194 4 C -0.242 4.242 5 O -0.268 6.268 6 C 0.330 3.670 7 O -0.400 6.400 8 C -0.108 4.108 9 C -0.002 4.002 10 O -0.288 6.288 11 C -0.020 4.020 12 C -0.138 4.138 13 H 0.132 0.868 14 C -0.018 4.018 15 N -0.365 5.365 16 C 0.322 3.678 17 O -0.467 6.467 18 C -0.150 4.150 19 C 0.006 3.994 20 C -0.581 4.581 21 H 0.095 0.905 22 C -0.205 4.205 23 N -0.578 5.578 24 Si 0.799 3.201 25 H -0.198 1.198 26 H -0.211 1.211 27 H -0.177 1.177 28 C -0.002 4.002 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.064 0.936 38 H 0.099 0.901 39 H 0.141 0.859 40 H 0.145 0.855 41 H 0.100 0.900 42 H 0.125 0.875 43 H 0.118 0.882 44 H 0.126 0.874 45 H 0.117 0.883 46 H -0.003 1.003 47 H 0.002 0.998 48 H 0.072 0.928 49 H 0.083 0.917 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -22.011 14.350 12.291 29.008 hybrid contribution 0.717 -0.513 -1.325 1.591 sum -21.294 13.837 10.966 27.662 Atomic orbital electron populations 1.22431 0.92658 1.03766 1.04367 1.22536 0.95412 0.93214 0.81632 1.21885 1.02002 0.90752 1.04726 1.22492 1.00967 1.02117 0.98591 1.86528 1.69734 1.24602 1.45922 1.22897 0.76655 0.80866 0.86533 1.90578 1.36158 1.70177 1.43095 1.22796 0.97617 0.96498 0.93902 1.23361 1.02225 0.89664 0.84977 1.89182 1.82084 1.24841 1.32743 1.23639 0.96843 0.94250 0.87291 1.23676 0.97646 0.90486 1.01984 0.86758 1.22911 0.83378 0.94633 1.00917 1.49233 1.27939 1.11132 1.48190 1.21129 0.78841 0.91684 0.76101 1.90658 1.42403 1.56608 1.57007 1.21600 1.01410 0.90310 1.01668 1.18684 0.92025 0.95663 0.92986 1.21679 1.11864 0.94821 1.29697 0.90490 1.26161 0.95151 1.03043 0.96106 1.70183 1.15615 1.36804 1.35162 0.85294 0.77277 0.78468 0.79051 1.19773 1.21102 1.17693 1.22339 0.91403 0.85247 1.01214 0.90591 0.89103 0.91952 0.92203 0.88180 0.90052 0.92462 0.88720 0.93569 0.90148 0.85905 0.85466 0.89962 0.87480 0.88234 0.87448 0.88295 1.00332 0.99773 0.92820 0.91733 0.87073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.87 8.37 71.98 0.60 -2.27 16 2 C 0.11 2.13 1.13 -10.79 -0.01 2.12 16 3 C -0.14 -1.93 8.85 71.98 0.64 -1.29 16 4 C -0.18 -4.43 8.37 71.98 0.60 -3.83 16 5 O -0.35 -8.15 9.87 -51.37 -0.51 -8.66 16 6 C 0.49 12.00 6.03 71.24 0.43 12.43 16 7 O -0.51 -14.53 11.15 21.94 0.24 -14.29 16 8 C -0.11 -2.15 1.03 -51.06 -0.05 -2.20 16 9 C 0.08 1.08 6.44 72.46 0.47 1.55 16 10 O -0.37 -5.65 11.65 -148.98 -1.74 -7.39 16 11 C 0.06 0.66 6.86 72.46 0.50 1.16 16 12 C -0.12 -2.09 3.76 -8.93 -0.03 -2.12 16 13 H 0.11 2.25 6.98 -2.39 -0.02 2.23 16 14 C 0.10 2.08 6.38 86.42 0.55 2.63 16 15 N -0.63 -19.24 3.32 -807.54 -2.68 -21.92 16 16 C 0.53 22.29 7.92 87.66 0.69 22.99 16 17 O -0.59 -30.73 16.24 -3.03 -0.05 -30.78 16 18 C -0.11 -4.67 4.62 29.85 0.14 -4.53 16 19 C 0.04 2.53 4.26 29.85 0.13 2.66 16 20 C -0.54 -31.42 9.11 25.60 0.23 -31.19 16 21 H 0.08 4.04 7.74 -2.91 -0.02 4.01 16 22 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 23 N -0.94 -60.37 13.29 21.45 0.28 -60.08 16 24 Si 0.98 44.75 29.54 68.60 2.03 46.77 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 26 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 27 H -0.25 -10.71 7.11 99.48 0.71 -10.00 16 28 C 0.12 3.10 6.14 86.51 0.53 3.63 16 29 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.31 5.89 -2.39 -0.01 1.29 16 32 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 0.92 8.14 -2.39 -0.02 0.91 16 35 H 0.06 1.68 5.89 -2.39 -0.01 1.67 16 36 H 0.09 1.76 8.14 -2.39 -0.02 1.75 16 37 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.08 0.98 7.98 -2.39 -0.02 0.96 16 39 H 0.12 1.44 7.75 -2.39 -0.02 1.42 16 40 H 0.13 0.98 7.75 -2.39 -0.02 0.96 16 41 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.11 1.69 7.57 -2.38 -0.02 1.67 16 43 H 0.10 1.88 7.32 -2.39 -0.02 1.86 16 44 H 0.11 3.95 8.14 -2.38 -0.02 3.93 16 45 H 0.10 3.78 7.96 -2.39 -0.02 3.76 16 46 H -0.02 -1.42 8.10 -2.39 -0.02 -1.44 16 47 H -0.02 -1.04 8.10 -2.38 -0.02 -1.06 16 48 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 49 H 0.06 2.00 7.64 -2.39 -0.02 1.98 16 50 H 0.11 2.36 7.57 -2.39 -0.02 2.34 16 Total: -1.00 -83.21 396.94 4.38 -78.83 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.92 Total: 15.75 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 5.87 Total: 1.77 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -2.40 Total: -82.00 kcal Atomic # 8 Polarization: -59.07 SS G_CDS: -2.05 Total: -61.11 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -83.21 4.38 -78.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146697223.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.364 kcal (2) G-P(sol) polarization free energy of solvation -83.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds