Wall clock time and date at job start Tue Mar 31 2020 23:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46928 * 2 1 4 4 C 1.50707 * 109.46866 * 180.02562 * 3 2 1 5 5 N 1.29426 * 124.80726 * 89.97700 * 4 3 2 6 6 C 1.30937 * 117.36623 * 180.02562 * 5 4 3 7 7 C 1.50704 * 122.90646 * 179.97438 * 6 5 4 8 8 C 1.35661 * 114.19102 * 0.02562 * 6 5 4 9 9 C 1.46685 * 126.12771 * 179.97438 * 8 6 5 10 10 O 1.21687 * 120.00460 * 0.02562 * 9 8 6 11 11 N 1.34777 * 119.99805 * 179.97438 * 9 8 6 12 12 C 1.46496 * 120.00192 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.47427 * 179.97438 * 12 11 9 14 14 H 1.08997 * 109.46752 * 65.00036 * 13 12 11 15 15 C 1.52996 * 109.47393 * 184.99778 * 13 12 11 16 16 N 1.46505 * 109.47015 * 305.00093 * 13 12 11 17 17 C 1.36936 * 119.99920 * 123.65744 * 16 13 12 18 18 H 1.07996 * 119.99931 * 212.48188 * 17 16 13 19 19 C 1.38813 * 119.99834 * 32.76059 * 17 16 13 20 20 N 1.31619 * 120.00214 * 10.70680 * 19 17 16 21 21 Si 1.86803 * 119.99804 * 190.70620 * 19 17 16 22 22 H 1.48502 * 109.46821 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47090 * 120.00029 * 21 19 17 24 24 H 1.48497 * 109.46877 * 240.00083 * 21 19 17 25 25 C 1.46504 * 119.99617 * 303.65830 * 16 13 12 26 26 C 1.53003 * 109.46579 * 264.31949 * 25 16 13 27 27 S 1.70955 * 124.80409 * 270.32997 * 4 3 2 28 28 H 1.09000 * 109.46942 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47174 * 299.99724 * 1 2 3 30 30 H 1.09000 * 109.46989 * 59.99995 * 1 2 3 31 31 H 1.08998 * 109.47174 * 240.00276 * 2 1 3 32 32 H 1.08997 * 109.47458 * 120.00199 * 2 1 3 33 33 H 1.09003 * 109.47039 * 60.00652 * 3 2 1 34 34 H 1.09000 * 109.47290 * 299.99821 * 3 2 1 35 35 H 1.09004 * 109.47059 * 270.00627 * 7 6 5 36 36 H 1.09000 * 109.47132 * 29.99950 * 7 6 5 37 37 H 1.08995 * 109.47042 * 150.00328 * 7 6 5 38 38 H 0.97000 * 120.00373 * 359.97438 * 11 9 8 39 39 H 1.09002 * 109.47344 * 59.99904 * 12 11 9 40 40 H 1.08998 * 109.47333 * 299.99922 * 12 11 9 41 41 H 1.09010 * 109.47002 * 60.00187 * 15 13 12 42 42 H 1.08995 * 109.47210 * 179.97438 * 15 13 12 43 43 H 1.09002 * 109.47077 * 300.00593 * 15 13 12 44 44 H 0.97000 * 120.00006 * 179.97438 * 20 19 17 45 45 H 1.08998 * 109.47200 * 24.32140 * 25 16 13 46 46 H 1.09002 * 109.46564 * 144.32399 * 25 16 13 47 47 H 1.08998 * 109.47511 * 300.00001 * 26 25 16 48 48 H 1.08996 * 109.46905 * 60.01023 * 26 25 16 49 49 H 1.09006 * 109.46584 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.2854 1.4422 -1.0636 6 6 5.5838 1.4417 -0.8946 7 6 6.5590 1.4408 -2.0436 8 6 5.9753 1.4410 0.4043 9 6 7.3593 1.4398 0.8904 10 8 8.2826 1.4399 0.0978 11 7 7.6082 1.4398 2.2150 12 6 8.9904 1.4391 2.7005 13 6 8.9935 1.4398 4.2306 14 1 8.5594 0.5089 4.5952 15 6 10.4315 1.5648 4.7377 16 7 8.2029 2.5720 4.7200 17 6 7.1513 2.3561 5.5702 18 1 6.2860 3.0013 5.5334 19 6 7.2000 1.3115 6.4831 20 7 8.3278 0.6624 6.6809 21 14 5.6648 0.8271 7.4308 22 1 4.5370 1.7053 7.0284 23 1 5.3228 -0.5863 7.1300 24 1 5.9143 0.9769 8.8870 25 6 8.5374 3.9350 4.2999 26 6 9.4286 4.5902 5.3570 27 16 4.5234 1.4342 1.4027 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6767 1.9564 -0.8900 35 1 6.7936 0.4129 -2.3202 36 1 6.1158 1.9544 -2.8967 37 1 7.4728 1.9543 -1.7449 38 1 6.8723 1.4409 2.8468 39 1 9.5039 2.3289 2.3362 40 1 9.5031 0.5489 2.3362 41 1 10.8657 2.4959 4.3730 42 1 10.4337 1.5658 5.8276 43 1 11.0197 0.7225 4.3734 44 1 8.3618 -0.0673 7.3191 45 1 9.0671 3.9021 3.3478 46 1 7.6216 4.5152 4.1864 47 1 8.8989 4.6231 6.3091 48 1 10.3443 4.0100 5.4705 49 1 9.6771 5.6045 5.0446 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156890784.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:43 Heat of formation + Delta-G solvation = 5.883443 kcal Electronic energy + Delta-G solvation = -28020.575569 eV Core-core repulsion = 24302.506874 eV Total energy + Delta-G solvation = -3718.068695 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.24737 -38.91160 -36.92465 -35.47598 -33.85627 -31.90912 -31.77532 -30.91397 -28.43070 -28.33465 -28.21314 -25.27420 -23.96749 -23.44375 -21.68180 -21.54840 -21.28014 -19.60870 -18.89767 -17.85721 -17.12452 -16.47693 -15.53279 -15.42392 -15.20947 -14.87495 -14.69098 -14.42323 -14.00944 -13.75752 -13.63790 -13.46452 -13.30430 -12.75444 -12.54519 -12.41194 -12.37769 -12.31400 -11.94341 -11.84593 -11.61438 -11.48001 -11.43754 -11.28432 -11.22754 -11.02830 -11.02620 -10.87499 -10.49146 -10.29126 -9.98096 -9.86082 -9.60438 -9.54037 -9.48819 -9.43200 -8.74740 -8.58326 -8.43750 -6.71370 -5.89551 -3.40077 0.31123 1.23297 1.66050 2.51093 3.27933 3.37339 3.37998 3.43820 3.59731 3.91627 4.38936 4.62349 4.70962 4.76117 5.06915 5.18330 5.23932 5.27756 5.29983 5.36716 5.42143 5.48482 5.71988 5.74514 5.82524 5.87203 5.88211 5.94202 5.98842 6.08647 6.12992 6.29863 6.38908 6.43103 6.48615 6.55284 6.68995 6.71575 6.77879 6.95049 6.99932 7.25454 7.52016 7.61143 7.63722 7.74567 7.99999 8.40152 8.55320 9.14204 9.74128 10.30032 11.16885 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010303 B = 0.003963 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.020728 B = 7063.943889 C = 8952.600043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.045 4.045 4 C 0.051 3.949 5 N -0.478 5.478 6 C 0.138 3.862 7 C -0.086 4.086 8 C -0.291 4.291 9 C 0.587 3.413 10 O -0.541 6.541 11 N -0.696 5.696 12 C 0.100 3.900 13 C 0.177 3.823 14 H 0.106 0.894 15 C -0.141 4.141 16 N -0.585 5.585 17 C -0.258 4.258 18 H 0.066 0.934 19 C 0.010 3.990 20 N -0.895 5.895 21 Si 0.896 3.104 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.142 3.858 26 C -0.166 4.166 27 S 0.182 5.818 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.408 0.592 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.028 0.972 42 H 0.081 0.919 43 H 0.029 0.971 44 H 0.254 0.746 45 H 0.037 0.963 46 H 0.035 0.965 47 H 0.052 0.948 48 H 0.050 0.950 49 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.547 0.180 -11.543 14.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.086 4.086 4 C -0.224 4.224 5 N -0.194 5.194 6 C 0.000 4.000 7 C -0.145 4.145 8 C -0.415 4.415 9 C 0.372 3.628 10 O -0.422 6.422 11 N -0.346 5.346 12 C -0.025 4.025 13 C 0.069 3.931 14 H 0.124 0.876 15 C -0.201 4.201 16 N -0.306 5.306 17 C -0.388 4.388 18 H 0.083 0.917 19 C -0.189 4.189 20 N -0.539 5.539 21 Si 0.726 3.274 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.217 1.217 25 C 0.016 3.984 26 C -0.226 4.226 27 S 0.440 5.560 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.119 0.881 38 H 0.245 0.755 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.047 0.953 42 H 0.100 0.900 43 H 0.048 0.952 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.054 0.946 47 H 0.071 0.929 48 H 0.069 0.931 49 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -9.356 0.052 -11.323 14.688 hybrid contribution -0.434 -0.235 0.402 0.637 sum -9.790 -0.184 -10.922 14.668 Atomic orbital electron populations 1.21757 0.94867 1.02107 1.02094 1.21548 0.96318 0.94926 1.03089 1.20385 0.84669 0.99010 1.04542 1.27364 1.01681 1.01638 0.91756 1.66053 1.04401 1.17434 1.31463 1.20605 0.89819 0.95891 0.93656 1.20614 0.97045 1.03446 0.93352 1.25634 0.98492 1.20216 0.97158 1.16725 0.85652 0.77341 0.83130 1.90728 1.44289 1.51999 1.55179 1.45887 1.10904 1.72319 1.05449 1.22223 0.80829 1.00467 0.98947 1.20556 0.92177 0.94449 0.85877 0.87631 1.22113 0.96360 0.97784 1.03806 1.43978 1.34427 0.99110 1.53127 1.19198 0.94450 1.13991 1.11185 0.91680 1.25174 0.96373 1.00635 0.96740 1.69939 1.23681 1.23917 1.36315 0.86319 0.82983 0.78166 0.79920 1.20165 1.21550 1.21655 1.20804 0.95960 0.87034 0.94649 1.22383 1.00911 0.97826 1.01430 1.84310 0.96140 1.65281 1.10261 0.92313 0.92381 0.92453 0.91197 0.91437 0.89303 0.88629 0.90435 0.91151 0.88135 0.75480 0.92570 0.92415 0.95260 0.90011 0.95193 0.93586 0.94493 0.94639 0.92910 0.93121 0.95368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.12 -1.00 5.92 -26.73 -0.16 -1.15 16 3 C -0.05 -0.41 5.79 -27.88 -0.16 -0.57 16 4 C 0.05 0.64 6.64 -13.29 -0.09 0.56 16 5 N -0.48 -6.94 10.50 -7.70 -0.08 -7.02 16 6 C 0.14 2.14 6.79 -83.89 -0.57 1.57 16 7 C -0.09 -1.17 9.69 36.01 0.35 -0.82 16 8 C -0.29 -4.75 6.48 -37.09 -0.24 -4.99 16 9 C 0.59 10.79 7.78 -12.85 -0.10 10.69 16 10 O -0.54 -10.81 14.27 5.20 0.07 -10.74 16 11 N -0.70 -12.99 5.38 -61.62 -0.33 -13.33 16 12 C 0.10 1.93 4.85 -4.04 -0.02 1.91 16 13 C 0.18 3.75 1.92 -67.93 -0.13 3.62 16 14 H 0.11 2.55 5.96 -51.93 -0.31 2.24 16 15 C -0.14 -2.88 8.23 37.16 0.31 -2.58 16 16 N -0.58 -12.92 1.83 -165.65 -0.30 -13.23 16 17 C -0.26 -6.29 9.51 -15.06 -0.14 -6.43 16 18 H 0.07 1.60 7.85 -52.49 -0.41 1.18 16 19 C 0.01 0.26 5.02 -17.43 -0.09 0.17 16 20 N -0.89 -23.17 9.91 55.49 0.55 -22.62 16 21 Si 0.90 19.99 29.57 -169.99 -5.03 14.97 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 C 0.14 2.84 5.73 -4.04 -0.02 2.81 16 26 C -0.17 -3.18 10.02 37.16 0.37 -2.81 16 27 S 0.18 2.52 22.31 -107.50 -2.40 0.13 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 1.51 6.01 -51.93 -0.31 1.20 16 38 H 0.41 7.79 7.27 -40.82 -0.30 7.49 16 39 H 0.06 1.09 6.75 -51.93 -0.35 0.74 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.03 0.55 6.49 -51.92 -0.34 0.22 16 42 H 0.08 1.90 7.12 -51.93 -0.37 1.53 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.25 6.50 8.31 -40.82 -0.34 6.16 16 45 H 0.04 0.71 6.34 -51.93 -0.33 0.38 16 46 H 0.04 0.71 8.09 -51.93 -0.42 0.29 16 47 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.05 0.99 6.03 -51.93 -0.31 0.68 16 49 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 401.45 15.07 6.05 6.05 Total: -1.00 -27.20 401.45 -9.87 -37.07 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -8.08 Total: 7.38 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -0.33 Total: 1.34 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.17 Total: -56.20 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.07 Total: -10.74 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.97 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -2.40 Total: 0.13 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -27.20 -9.87 -37.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156890784.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.954 kcal (2) G-P(sol) polarization free energy of solvation -27.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds