Wall clock time and date at job start Tue Mar 31 2020 23:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46928 * 2 1 4 4 C 1.50707 * 109.46866 * 180.02562 * 3 2 1 5 5 N 1.29426 * 124.80726 * 89.97700 * 4 3 2 6 6 C 1.30937 * 117.36623 * 180.02562 * 5 4 3 7 7 C 1.50704 * 122.90646 * 179.97438 * 6 5 4 8 8 C 1.35661 * 114.19102 * 0.02562 * 6 5 4 9 9 C 1.46685 * 126.12771 * 179.97438 * 8 6 5 10 10 O 1.21687 * 120.00460 * 0.02562 * 9 8 6 11 11 N 1.34777 * 119.99805 * 179.97438 * 9 8 6 12 12 C 1.46496 * 120.00192 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.47427 * 179.97438 * 12 11 9 14 14 H 1.08997 * 109.46752 * 65.00036 * 13 12 11 15 15 C 1.52996 * 109.47393 * 184.99778 * 13 12 11 16 16 N 1.46505 * 109.47015 * 305.00093 * 13 12 11 17 17 C 1.36936 * 119.99920 * 123.65744 * 16 13 12 18 18 H 1.07996 * 119.99931 * 212.48188 * 17 16 13 19 19 C 1.38813 * 119.99834 * 32.76059 * 17 16 13 20 20 N 1.31619 * 120.00214 * 10.70680 * 19 17 16 21 21 Si 1.86803 * 119.99804 * 190.70620 * 19 17 16 22 22 H 1.48502 * 109.46821 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47090 * 120.00029 * 21 19 17 24 24 H 1.48497 * 109.46877 * 240.00083 * 21 19 17 25 25 C 1.46504 * 119.99617 * 303.65830 * 16 13 12 26 26 C 1.53003 * 109.46579 * 264.31949 * 25 16 13 27 27 S 1.70955 * 124.80409 * 270.32997 * 4 3 2 28 28 H 1.09000 * 109.46942 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47174 * 299.99724 * 1 2 3 30 30 H 1.09000 * 109.46989 * 59.99995 * 1 2 3 31 31 H 1.08998 * 109.47174 * 240.00276 * 2 1 3 32 32 H 1.08997 * 109.47458 * 120.00199 * 2 1 3 33 33 H 1.09003 * 109.47039 * 60.00652 * 3 2 1 34 34 H 1.09000 * 109.47290 * 299.99821 * 3 2 1 35 35 H 1.09004 * 109.47059 * 270.00627 * 7 6 5 36 36 H 1.09000 * 109.47132 * 29.99950 * 7 6 5 37 37 H 1.08995 * 109.47042 * 150.00328 * 7 6 5 38 38 H 0.97000 * 120.00373 * 359.97438 * 11 9 8 39 39 H 1.09002 * 109.47344 * 59.99904 * 12 11 9 40 40 H 1.08998 * 109.47333 * 299.99922 * 12 11 9 41 41 H 1.09010 * 109.47002 * 60.00187 * 15 13 12 42 42 H 1.08995 * 109.47210 * 179.97438 * 15 13 12 43 43 H 1.09002 * 109.47077 * 300.00593 * 15 13 12 44 44 H 0.97000 * 120.00006 * 179.97438 * 20 19 17 45 45 H 1.08998 * 109.47200 * 24.32140 * 25 16 13 46 46 H 1.09002 * 109.46564 * 144.32399 * 25 16 13 47 47 H 1.08998 * 109.47511 * 300.00001 * 26 25 16 48 48 H 1.08996 * 109.46905 * 60.01023 * 26 25 16 49 49 H 1.09006 * 109.46584 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.2854 1.4422 -1.0636 6 6 5.5838 1.4417 -0.8946 7 6 6.5590 1.4408 -2.0436 8 6 5.9753 1.4410 0.4043 9 6 7.3593 1.4398 0.8904 10 8 8.2826 1.4399 0.0978 11 7 7.6082 1.4398 2.2150 12 6 8.9904 1.4391 2.7005 13 6 8.9935 1.4398 4.2306 14 1 8.5594 0.5089 4.5952 15 6 10.4315 1.5648 4.7377 16 7 8.2029 2.5720 4.7200 17 6 7.1513 2.3561 5.5702 18 1 6.2860 3.0013 5.5334 19 6 7.2000 1.3115 6.4831 20 7 8.3278 0.6624 6.6809 21 14 5.6648 0.8271 7.4308 22 1 4.5370 1.7053 7.0284 23 1 5.3228 -0.5863 7.1300 24 1 5.9143 0.9769 8.8870 25 6 8.5374 3.9350 4.2999 26 6 9.4286 4.5902 5.3570 27 16 4.5234 1.4342 1.4027 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6767 1.9564 -0.8900 35 1 6.7936 0.4129 -2.3202 36 1 6.1158 1.9544 -2.8967 37 1 7.4728 1.9543 -1.7449 38 1 6.8723 1.4409 2.8468 39 1 9.5039 2.3289 2.3362 40 1 9.5031 0.5489 2.3362 41 1 10.8657 2.4959 4.3730 42 1 10.4337 1.5658 5.8276 43 1 11.0197 0.7225 4.3734 44 1 8.3618 -0.0673 7.3191 45 1 9.0671 3.9021 3.3478 46 1 7.6216 4.5152 4.1864 47 1 8.8989 4.6231 6.3091 48 1 10.3443 4.0100 5.4705 49 1 9.6771 5.6045 5.0446 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156890784.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:42 Heat of formation + Delta-G solvation = -7.901138 kcal Electronic energy + Delta-G solvation = -28021.173313 eV Core-core repulsion = 24302.506874 eV Total energy + Delta-G solvation = -3718.666439 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.45666 -40.29088 -38.58242 -36.24271 -35.41822 -33.72699 -32.87547 -32.45051 -30.10371 -29.61064 -29.07790 -26.79116 -25.76744 -24.33457 -23.31316 -22.66458 -22.26364 -21.18417 -20.34604 -18.99129 -18.81766 -17.84296 -16.89293 -16.78163 -16.56102 -16.18233 -15.97144 -15.66246 -15.45674 -15.18368 -14.88268 -14.67884 -14.38628 -14.25930 -14.00500 -13.65363 -13.59979 -13.31521 -13.26250 -13.08758 -13.01314 -12.95070 -12.78811 -12.63930 -12.58258 -12.36982 -12.17546 -12.11590 -12.03719 -11.75889 -11.66272 -11.28236 -11.26847 -11.12998 -10.74727 -10.60581 -10.45783 -10.06371 -9.74195 -8.53041 -7.79191 -5.30403 -0.83200 0.12477 0.54151 1.33427 1.48830 1.54297 1.60773 2.07803 2.19278 2.55515 2.91496 3.37319 3.64178 3.75136 3.79703 4.02021 4.05243 4.08650 4.25861 4.45633 4.46357 4.52658 4.64376 4.68470 4.72169 4.73177 4.78683 4.84148 4.87520 4.90601 4.90968 4.92665 5.04098 5.09420 5.17820 5.20192 5.24095 5.29988 5.34178 5.43379 5.45953 5.61242 5.74924 5.78549 5.94622 6.45024 6.52330 6.58005 7.09330 7.26877 7.93465 8.44635 9.24958 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010303 B = 0.003963 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.020728 B = 7063.943889 C = 8952.600043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.047 4.047 4 C 0.072 3.928 5 N -0.494 5.494 6 C 0.142 3.858 7 C -0.083 4.083 8 C -0.326 4.326 9 C 0.588 3.412 10 O -0.562 6.562 11 N -0.698 5.698 12 C 0.112 3.888 13 C 0.183 3.817 14 H 0.076 0.924 15 C -0.130 4.130 16 N -0.592 5.592 17 C -0.257 4.257 18 H 0.063 0.937 19 C -0.032 4.032 20 N -0.915 5.915 21 Si 0.948 3.052 22 H -0.266 1.266 23 H -0.292 1.292 24 H -0.300 1.300 25 C 0.141 3.859 26 C -0.156 4.156 27 S 0.185 5.815 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.406 0.594 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.040 0.960 42 H 0.051 0.949 43 H 0.044 0.956 44 H 0.247 0.753 45 H 0.047 0.953 46 H 0.037 0.963 47 H 0.030 0.970 48 H 0.042 0.958 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.327 0.819 -12.613 16.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.088 4.088 4 C -0.203 4.203 5 N -0.209 5.209 6 C 0.003 3.997 7 C -0.142 4.142 8 C -0.449 4.449 9 C 0.375 3.625 10 O -0.445 6.445 11 N -0.348 5.348 12 C -0.013 4.013 13 C 0.076 3.924 14 H 0.094 0.906 15 C -0.190 4.190 16 N -0.314 5.314 17 C -0.387 4.387 18 H 0.081 0.919 19 C -0.229 4.229 20 N -0.560 5.560 21 Si 0.778 3.222 22 H -0.190 1.190 23 H -0.219 1.219 24 H -0.228 1.228 25 C 0.016 3.984 26 C -0.215 4.215 27 S 0.444 5.556 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.242 0.758 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.065 0.935 46 H 0.055 0.945 47 H 0.049 0.951 48 H 0.061 0.939 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.144 0.709 -12.399 16.686 hybrid contribution 0.042 -0.407 0.668 0.784 sum -11.102 0.302 -11.730 16.154 Atomic orbital electron populations 1.21736 0.93239 1.02641 1.02862 1.21531 0.97658 0.94030 1.02418 1.20653 0.81978 0.99962 1.06185 1.28079 1.03048 0.98464 0.90739 1.66154 1.04000 1.18836 1.31926 1.20916 0.90553 0.94420 0.93781 1.20609 0.96205 1.03903 0.93477 1.25432 0.98212 1.23239 0.98066 1.16931 0.86468 0.76507 0.82611 1.90707 1.45320 1.52983 1.55471 1.45855 1.10442 1.72762 1.05710 1.21988 0.81412 1.00600 0.97287 1.20381 0.92121 0.92928 0.86968 0.90607 1.21951 0.96284 0.99027 1.01723 1.44072 1.34253 1.00211 1.52899 1.19342 0.94937 1.13535 1.10930 0.91932 1.25693 0.98262 1.01105 0.97796 1.70082 1.24941 1.24191 1.36822 0.85500 0.81008 0.77654 0.78074 1.19016 1.21939 1.22795 1.20867 0.96348 0.85967 0.95242 1.22252 0.99916 0.99387 0.99983 1.84260 0.95347 1.65475 1.10522 0.91958 0.91639 0.91669 0.92118 0.91954 0.87308 0.87271 0.89709 0.89317 0.89648 0.75758 0.92477 0.92139 0.94076 0.92992 0.93749 0.94338 0.93499 0.94479 0.95071 0.93884 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 71.98 0.71 -0.82 16 2 C -0.12 -1.68 5.92 30.59 0.18 -1.50 16 3 C -0.05 -0.73 5.79 29.85 0.17 -0.55 16 4 C 0.07 1.68 6.64 88.47 0.59 2.27 16 5 N -0.49 -13.54 10.50 -178.28 -1.87 -15.41 16 6 C 0.14 4.26 6.79 42.10 0.29 4.55 16 7 C -0.08 -2.20 9.69 71.24 0.69 -1.51 16 8 C -0.33 -10.50 6.48 23.88 0.15 -10.34 16 9 C 0.59 21.63 7.78 86.45 0.67 22.31 16 10 O -0.56 -22.52 14.27 -4.31 -0.06 -22.58 16 11 N -0.70 -26.09 5.38 -467.08 -2.51 -28.60 16 12 C 0.11 4.29 4.85 86.38 0.42 4.71 16 13 C 0.18 7.80 1.92 44.99 0.09 7.89 16 14 H 0.08 3.74 5.96 -2.39 -0.01 3.73 16 15 C -0.13 -5.32 8.23 71.98 0.59 -4.73 16 16 N -0.59 -26.11 1.83 -678.01 -1.24 -27.35 16 17 C -0.26 -12.50 9.51 84.03 0.80 -11.70 16 18 H 0.06 3.04 7.85 -2.91 -0.02 3.02 16 19 C -0.03 -1.58 5.02 84.86 0.43 -1.15 16 20 N -0.92 -48.27 9.91 21.65 0.21 -48.06 16 21 Si 0.95 41.24 29.57 68.60 2.03 43.27 16 22 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 23 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 24 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 25 C 0.14 5.51 5.73 86.38 0.50 6.01 16 26 C -0.16 -5.80 10.02 71.98 0.72 -5.07 16 27 S 0.19 4.95 22.31 -56.49 -1.26 3.69 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 2.10 8.14 -2.38 -0.02 2.09 16 36 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.08 2.55 6.01 -2.39 -0.01 2.54 16 38 H 0.41 15.55 7.27 -92.71 -0.67 14.87 16 39 H 0.06 2.17 6.75 -2.39 -0.02 2.16 16 40 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.04 1.54 6.49 -2.38 -0.02 1.52 16 42 H 0.05 2.44 7.12 -2.39 -0.02 2.42 16 43 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.25 12.94 8.31 -92.71 -0.77 12.17 16 45 H 0.05 1.73 6.34 -2.39 -0.02 1.72 16 46 H 0.04 1.43 8.09 -2.39 -0.02 1.41 16 47 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.04 1.64 6.03 -2.39 -0.01 1.63 16 49 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -57.94 401.45 2.57 -55.37 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: 0.27 Total: 29.32 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 7.00 Total: 10.35 kcal Atomic # 7 Polarization: -114.01 SS G_CDS: -5.41 Total: -119.42 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.06 Total: -22.58 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Atomic # 16 Polarization: 4.95 SS G_CDS: -1.26 Total: 3.69 kcal Total: -57.94 2.57 -55.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156890784.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.473 kcal (2) G-P(sol) polarization free energy of solvation -57.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds