Wall clock time and date at job start Tue Mar 31 2020 22:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29029 * 124.91704 * 2 1 4 4 C 1.31778 * 117.12461 * 180.02562 * 3 2 1 5 5 C 1.50705 * 122.75007 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.47125 * 270.00554 * 5 4 3 7 7 O 1.21281 * 120.00245 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99568 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99983 * 179.97438 * 8 6 5 10 10 H 1.09005 * 109.47077 * 34.99557 * 9 8 6 11 11 C 1.52998 * 109.47223 * 275.00017 * 9 8 6 12 12 C 1.52997 * 109.47278 * 154.99686 * 9 8 6 13 13 C 1.52998 * 109.47446 * 295.00218 * 12 9 8 14 14 C 1.52992 * 109.47126 * 180.02562 * 13 12 9 15 15 C 1.53008 * 109.47201 * 180.02562 * 14 13 12 16 16 N 1.46493 * 109.47209 * 180.02562 * 15 14 13 17 17 C 1.36935 * 119.99810 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00526 * 359.97438 * 17 16 15 19 19 C 1.38817 * 120.00106 * 179.97438 * 17 16 15 20 20 N 1.31625 * 119.99780 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00062 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47441 * 90.00149 * 21 19 17 23 23 H 1.48502 * 109.47280 * 210.00027 * 21 19 17 24 24 H 1.48498 * 109.47216 * 330.00085 * 21 19 17 25 25 C 1.33641 * 114.50181 * 0.02562 * 4 3 2 26 26 C 1.50703 * 126.03730 * 179.97438 * 25 4 3 27 27 S 1.70982 * 124.91788 * 180.31651 * 2 1 3 28 28 H 1.08992 * 109.47230 * 89.99952 * 1 2 3 29 29 H 1.09008 * 109.46713 * 209.99976 * 1 2 3 30 30 H 1.08996 * 109.46878 * 329.99456 * 1 2 3 31 31 H 1.09005 * 109.46594 * 30.00419 * 5 4 3 32 32 H 1.09000 * 109.46729 * 149.99907 * 5 4 3 33 33 H 0.97005 * 120.00067 * 359.97438 * 8 6 5 34 34 H 1.09000 * 109.47606 * 179.97438 * 11 9 8 35 35 H 1.09001 * 109.47216 * 300.00315 * 11 9 8 36 36 H 1.09006 * 109.47096 * 59.99617 * 11 9 8 37 37 H 1.08999 * 109.47022 * 55.00404 * 12 9 8 38 38 H 1.08996 * 109.47121 * 174.99937 * 12 9 8 39 39 H 1.08997 * 109.46652 * 300.00182 * 13 12 9 40 40 H 1.08996 * 109.47190 * 59.99761 * 13 12 9 41 41 H 1.08997 * 109.47486 * 299.99649 * 14 13 12 42 42 H 1.08996 * 109.47299 * 59.99806 * 14 13 12 43 43 H 1.08997 * 109.46597 * 300.00173 * 15 14 13 44 44 H 1.08994 * 109.46676 * 59.99594 * 15 14 13 45 45 H 0.97000 * 120.00065 * 359.97438 * 16 15 14 46 46 H 0.96991 * 119.99706 * 179.97438 * 20 19 17 47 47 H 1.09002 * 109.47152 * 90.00002 * 26 25 4 48 48 H 1.09001 * 109.46980 * 330.00102 * 26 25 4 49 49 H 1.09004 * 109.47113 * 210.00083 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5308 2.0246 -0.0012 6 6 4.8566 2.4061 -1.4221 7 8 4.3442 1.8068 -2.3437 8 7 5.7174 3.4134 -1.6689 9 6 6.0346 3.7841 -3.0502 10 1 5.1495 3.6553 -3.6734 11 6 7.1605 2.8894 -3.5726 12 6 6.4822 5.2464 -3.0960 13 6 5.3153 6.1499 -2.6923 14 6 5.7628 7.6121 -2.7387 15 6 4.5961 8.5157 -2.3344 16 7 5.0244 9.9159 -2.3794 17 6 4.1426 10.9123 -2.0557 18 1 3.1313 10.6660 -1.7676 19 6 4.5486 12.2391 -2.0978 20 7 5.7812 12.5393 -2.4485 21 14 3.3460 13.5983 -1.6555 22 1 3.4288 13.8782 -0.1995 23 1 3.6866 14.8275 -2.4160 24 1 1.9663 13.1698 -1.9994 25 6 3.9354 -0.4006 -0.0015 26 6 5.3575 -0.8994 -0.0029 27 16 2.4857 -1.4020 -0.0077 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 4.0908 2.8792 0.5128 32 1 5.4434 1.7222 0.5124 33 1 6.1269 3.8930 -0.9318 34 1 7.3963 3.1649 -4.6006 35 1 8.0456 3.0181 -2.9495 36 1 6.8416 1.8476 -3.5400 37 1 7.3121 5.3941 -2.4049 38 1 6.8026 5.4968 -4.1073 39 1 4.4855 6.0021 -3.3834 40 1 4.9949 5.8995 -1.6811 41 1 6.5928 7.7603 -2.0479 42 1 6.0830 7.8622 -3.7502 43 1 3.7658 8.3676 -3.0249 44 1 4.2764 8.2654 -1.3229 45 1 5.9325 10.1372 -2.6385 46 1 6.0647 13.4664 -2.4783 47 1 5.7011 -1.0203 1.0245 48 1 5.9945 -0.1795 -0.5167 49 1 5.4054 -1.8592 -0.5173 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171524762.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:49 Heat of formation + Delta-G solvation = -14.266387 kcal Electronic energy + Delta-G solvation = -26222.138935 eV Core-core repulsion = 22503.196477 eV Total energy + Delta-G solvation = -3718.942457 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.68933 -39.48802 -36.94796 -35.23442 -34.16871 -33.24291 -31.82213 -30.78049 -30.41952 -29.47568 -27.43250 -25.52331 -24.24925 -23.41371 -22.21194 -21.14241 -20.72749 -20.58643 -19.11066 -18.28208 -17.40506 -16.98431 -16.40446 -15.63533 -15.28573 -15.14269 -14.80481 -14.63951 -14.11932 -13.98905 -13.81235 -13.73096 -13.56596 -13.52595 -13.15620 -13.08048 -12.98928 -12.90613 -12.54522 -12.47954 -12.33522 -12.16976 -11.75055 -11.47783 -11.39507 -11.23781 -10.98113 -10.78766 -10.68485 -10.39995 -10.28191 -10.04545 -9.96310 -9.86861 -9.64195 -9.46970 -9.20776 -8.85060 -8.83326 -6.87725 -5.73160 -3.01357 0.42113 1.03679 1.42375 2.39850 2.49073 3.12628 3.45889 3.50726 3.52820 3.77221 4.41124 4.50731 4.61508 4.63904 4.66605 4.76249 4.91367 4.96134 4.98512 5.00690 5.09190 5.12141 5.18395 5.26917 5.40795 5.42546 5.46363 5.50576 5.57158 5.59662 5.63652 5.71382 5.80292 5.88370 5.93186 5.97019 6.12096 6.25536 6.33486 6.40851 6.41980 6.49884 6.92874 6.96695 7.33084 7.50984 7.73502 8.07553 8.46387 9.57005 10.16430 10.51083 11.49990 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013754 B = 0.001852 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.349957 B =15117.303925 C =16681.413353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.048 3.952 3 N -0.459 5.459 4 C 0.086 3.914 5 C -0.070 4.070 6 C 0.520 3.480 7 O -0.532 6.532 8 N -0.723 5.723 9 C 0.141 3.859 10 H 0.087 0.913 11 C -0.162 4.162 12 C -0.126 4.126 13 C -0.114 4.114 14 C -0.125 4.125 15 C 0.152 3.848 16 N -0.735 5.735 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.017 4.017 20 N -0.935 5.935 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.212 4.212 26 C -0.074 4.074 27 S 0.111 5.889 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.401 0.599 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.077 0.923 48 H 0.077 0.923 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.320 -33.494 5.915 34.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.230 4.230 3 N -0.173 5.173 4 C -0.046 4.046 5 C -0.113 4.113 6 C 0.305 3.695 7 O -0.408 6.408 8 N -0.375 5.375 9 C 0.037 3.963 10 H 0.105 0.895 11 C -0.220 4.220 12 C -0.164 4.164 13 C -0.152 4.152 14 C -0.163 4.163 15 C 0.024 3.976 16 N -0.379 5.379 17 C -0.369 4.369 18 H 0.088 0.912 19 C -0.213 4.213 20 N -0.584 5.584 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.333 4.333 26 C -0.134 4.134 27 S 0.366 5.634 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.235 0.765 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.216 0.784 46 H 0.064 0.936 47 H 0.096 0.904 48 H 0.096 0.904 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.354 -34.408 5.266 34.835 hybrid contribution 0.431 1.913 0.472 2.017 sum -0.923 -32.495 5.738 33.010 Atomic orbital electron populations 1.20445 0.85123 1.04152 1.04017 1.26840 1.01617 0.90660 1.03925 1.65998 1.04316 1.31689 1.15318 1.19271 0.89780 0.92668 1.02879 1.20207 0.98149 0.97247 0.95663 1.20322 0.78450 0.79908 0.90834 1.90717 1.51369 1.52548 1.46164 1.46082 1.46574 1.35739 1.09126 1.21031 0.98578 0.94076 0.82596 0.89459 1.22169 0.98303 1.00212 1.01353 1.21933 0.99007 0.92450 1.03037 1.21515 0.97438 0.94642 1.01623 1.21723 0.99330 0.93565 1.01690 1.20651 0.94414 0.85254 0.97237 1.42389 1.13364 0.99766 1.82374 1.19262 0.93610 0.86434 1.37575 0.91229 1.24757 0.96639 0.97224 1.02657 1.69664 1.16311 1.17598 1.54834 0.86170 0.80218 0.81877 0.77844 1.21736 1.21771 1.20768 1.25571 1.00286 0.95600 1.11853 1.20237 0.88670 1.01764 1.02687 1.83816 0.97586 1.12671 1.69317 0.89532 0.90181 0.89146 0.86852 0.87306 0.76455 0.91563 0.92476 0.92405 0.91322 0.90260 0.92036 0.92085 0.92139 0.92084 0.96576 0.96599 0.78359 0.93573 0.90437 0.90441 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.46 36.01 0.38 -0.14 16 2 C 0.05 0.48 7.39 -13.46 -0.10 0.38 16 3 N -0.46 -5.74 10.53 -8.05 -0.08 -5.83 16 4 C 0.09 0.96 5.23 -84.22 -0.44 0.52 16 5 C -0.07 -0.62 5.63 -29.03 -0.16 -0.78 16 6 C 0.52 5.77 7.79 -10.99 -0.09 5.69 16 7 O -0.53 -8.15 15.70 5.56 0.09 -8.06 16 8 N -0.72 -6.54 4.53 -53.81 -0.24 -6.78 16 9 C 0.14 1.40 2.57 -67.93 -0.17 1.22 16 10 H 0.09 1.07 7.58 -51.93 -0.39 0.68 16 11 C -0.16 -1.42 9.48 37.16 0.35 -1.06 16 12 C -0.13 -1.25 4.75 -26.73 -0.13 -1.37 16 13 C -0.11 -1.44 5.10 -26.74 -0.14 -1.58 16 14 C -0.13 -2.02 5.33 -26.73 -0.14 -2.16 16 15 C 0.15 3.19 6.26 -4.04 -0.03 3.16 16 16 N -0.73 -19.43 5.60 -59.91 -0.34 -19.77 16 17 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 18 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 19 C -0.02 -0.51 5.50 -17.43 -0.10 -0.60 16 20 N -0.94 -28.90 13.06 55.49 0.72 -28.18 16 21 Si 0.91 22.92 29.55 -169.99 -5.02 17.89 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 25 C -0.21 -2.02 6.59 -35.92 -0.24 -2.26 16 26 C -0.07 -0.48 9.81 36.01 0.35 -0.13 16 27 S 0.11 0.95 23.18 -107.50 -2.49 -1.55 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.35 8.14 -51.92 -0.42 -0.08 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.11 0.61 7.35 -51.93 -0.38 0.22 16 33 H 0.40 2.68 8.60 -40.82 -0.35 2.33 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.75 7.75 -51.93 -0.40 0.35 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.38 10.53 7.67 -40.82 -0.31 10.21 16 46 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 47 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.08 0.50 7.43 -51.93 -0.39 0.12 16 49 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 418.17 15.07 6.30 6.30 Total: -1.00 -36.55 418.17 -10.40 -46.95 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -8.54 Total: 5.19 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -0.80 Total: -6.17 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: 0.06 Total: -60.56 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.09 Total: -8.06 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.89 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.49 Total: -1.55 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -36.55 -10.40 -46.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171524762.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.683 kcal (2) G-P(sol) polarization free energy of solvation -36.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds