Wall clock time and date at job start Tue Mar 31 2020 22:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29029 * 124.91704 * 2 1 4 4 C 1.31778 * 117.12461 * 180.02562 * 3 2 1 5 5 C 1.50705 * 122.75007 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.47125 * 270.00554 * 5 4 3 7 7 O 1.21281 * 120.00245 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99568 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99983 * 179.97438 * 8 6 5 10 10 H 1.09005 * 109.47077 * 34.99557 * 9 8 6 11 11 C 1.52998 * 109.47223 * 275.00017 * 9 8 6 12 12 C 1.52997 * 109.47278 * 154.99686 * 9 8 6 13 13 C 1.52998 * 109.47446 * 295.00218 * 12 9 8 14 14 C 1.52992 * 109.47126 * 180.02562 * 13 12 9 15 15 C 1.53008 * 109.47201 * 180.02562 * 14 13 12 16 16 N 1.46493 * 109.47209 * 180.02562 * 15 14 13 17 17 C 1.36935 * 119.99810 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00526 * 359.97438 * 17 16 15 19 19 C 1.38817 * 120.00106 * 179.97438 * 17 16 15 20 20 N 1.31625 * 119.99780 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00062 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47441 * 90.00149 * 21 19 17 23 23 H 1.48502 * 109.47280 * 210.00027 * 21 19 17 24 24 H 1.48498 * 109.47216 * 330.00085 * 21 19 17 25 25 C 1.33641 * 114.50181 * 0.02562 * 4 3 2 26 26 C 1.50703 * 126.03730 * 179.97438 * 25 4 3 27 27 S 1.70982 * 124.91788 * 180.31651 * 2 1 3 28 28 H 1.08992 * 109.47230 * 89.99952 * 1 2 3 29 29 H 1.09008 * 109.46713 * 209.99976 * 1 2 3 30 30 H 1.08996 * 109.46878 * 329.99456 * 1 2 3 31 31 H 1.09005 * 109.46594 * 30.00419 * 5 4 3 32 32 H 1.09000 * 109.46729 * 149.99907 * 5 4 3 33 33 H 0.97005 * 120.00067 * 359.97438 * 8 6 5 34 34 H 1.09000 * 109.47606 * 179.97438 * 11 9 8 35 35 H 1.09001 * 109.47216 * 300.00315 * 11 9 8 36 36 H 1.09006 * 109.47096 * 59.99617 * 11 9 8 37 37 H 1.08999 * 109.47022 * 55.00404 * 12 9 8 38 38 H 1.08996 * 109.47121 * 174.99937 * 12 9 8 39 39 H 1.08997 * 109.46652 * 300.00182 * 13 12 9 40 40 H 1.08996 * 109.47190 * 59.99761 * 13 12 9 41 41 H 1.08997 * 109.47486 * 299.99649 * 14 13 12 42 42 H 1.08996 * 109.47299 * 59.99806 * 14 13 12 43 43 H 1.08997 * 109.46597 * 300.00173 * 15 14 13 44 44 H 1.08994 * 109.46676 * 59.99594 * 15 14 13 45 45 H 0.97000 * 120.00065 * 359.97438 * 16 15 14 46 46 H 0.96991 * 119.99706 * 179.97438 * 20 19 17 47 47 H 1.09002 * 109.47152 * 90.00002 * 26 25 4 48 48 H 1.09001 * 109.46980 * 330.00102 * 26 25 4 49 49 H 1.09004 * 109.47113 * 210.00083 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5308 2.0246 -0.0012 6 6 4.8566 2.4061 -1.4221 7 8 4.3442 1.8068 -2.3437 8 7 5.7174 3.4134 -1.6689 9 6 6.0346 3.7841 -3.0502 10 1 5.1495 3.6553 -3.6734 11 6 7.1605 2.8894 -3.5726 12 6 6.4822 5.2464 -3.0960 13 6 5.3153 6.1499 -2.6923 14 6 5.7628 7.6121 -2.7387 15 6 4.5961 8.5157 -2.3344 16 7 5.0244 9.9159 -2.3794 17 6 4.1426 10.9123 -2.0557 18 1 3.1313 10.6660 -1.7676 19 6 4.5486 12.2391 -2.0978 20 7 5.7812 12.5393 -2.4485 21 14 3.3460 13.5983 -1.6555 22 1 3.4288 13.8782 -0.1995 23 1 3.6866 14.8275 -2.4160 24 1 1.9663 13.1698 -1.9994 25 6 3.9354 -0.4006 -0.0015 26 6 5.3575 -0.8994 -0.0029 27 16 2.4857 -1.4020 -0.0077 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 4.0908 2.8792 0.5128 32 1 5.4434 1.7222 0.5124 33 1 6.1269 3.8930 -0.9318 34 1 7.3963 3.1649 -4.6006 35 1 8.0456 3.0181 -2.9495 36 1 6.8416 1.8476 -3.5400 37 1 7.3121 5.3941 -2.4049 38 1 6.8026 5.4968 -4.1073 39 1 4.4855 6.0021 -3.3834 40 1 4.9949 5.8995 -1.6811 41 1 6.5928 7.7603 -2.0479 42 1 6.0830 7.8622 -3.7502 43 1 3.7658 8.3676 -3.0249 44 1 4.2764 8.2654 -1.3229 45 1 5.9325 10.1372 -2.6385 46 1 6.0647 13.4664 -2.4783 47 1 5.7011 -1.0203 1.0245 48 1 5.9945 -0.1795 -0.5167 49 1 5.4054 -1.8592 -0.5173 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171524762.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:49 Heat of formation + Delta-G solvation = -38.565462 kcal Electronic energy + Delta-G solvation = -26223.192621 eV Core-core repulsion = 22503.196477 eV Total energy + Delta-G solvation = -3719.996144 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.45392 -40.29201 -38.02470 -36.81778 -34.83253 -34.76809 -33.08599 -31.99031 -31.26756 -30.20852 -28.81816 -26.19555 -25.89535 -24.25381 -23.60042 -22.16178 -21.97505 -21.47977 -19.80768 -19.14403 -18.96449 -18.20964 -17.25108 -16.69736 -16.37673 -16.30626 -15.98334 -15.60299 -15.40740 -15.28997 -14.89028 -14.61776 -14.37616 -14.32084 -14.17742 -14.16631 -14.04941 -13.62697 -13.32952 -13.12031 -13.07279 -12.99827 -12.87936 -12.87134 -12.78909 -12.46096 -12.26702 -12.16826 -12.08053 -11.89379 -11.81527 -11.50097 -11.39856 -10.95162 -10.93945 -10.60181 -10.15579 -10.04953 -9.52394 -9.02812 -7.97699 -5.27057 -0.26795 0.38729 0.72852 1.45713 1.47938 1.56618 1.64251 1.66827 2.38560 2.54355 3.15600 3.35312 3.59354 3.75615 3.96901 4.03718 4.05191 4.05665 4.09221 4.16647 4.35023 4.40358 4.42255 4.47248 4.59745 4.61925 4.62861 4.64485 4.67755 4.78835 4.87151 4.89367 4.92147 4.93529 4.98935 5.01692 5.08065 5.12834 5.26078 5.28416 5.32587 5.44380 5.44877 5.52124 5.61427 6.25307 6.59544 6.80817 7.29600 7.30876 8.07216 8.31179 9.25835 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013754 B = 0.001852 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.349957 B =15117.303925 C =16681.413353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.028 3.972 3 N -0.499 5.499 4 C 0.057 3.943 5 C -0.066 4.066 6 C 0.519 3.481 7 O -0.580 6.580 8 N -0.711 5.711 9 C 0.145 3.855 10 H 0.059 0.941 11 C -0.155 4.155 12 C -0.115 4.115 13 C -0.105 4.105 14 C -0.111 4.111 15 C 0.147 3.853 16 N -0.749 5.749 17 C -0.251 4.251 18 H 0.072 0.928 19 C -0.077 4.077 20 N -0.969 5.969 21 Si 0.977 3.023 22 H -0.284 1.284 23 H -0.292 1.292 24 H -0.271 1.271 25 C -0.220 4.220 26 C -0.074 4.074 27 S 0.139 5.861 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.117 0.883 32 H 0.143 0.857 33 H 0.415 0.585 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.042 0.958 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.050 0.950 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.010 0.990 44 H 0.018 0.982 45 H 0.375 0.625 46 H 0.253 0.747 47 H 0.099 0.901 48 H 0.077 0.923 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.219 -34.545 6.926 35.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.250 4.250 3 N -0.214 5.214 4 C -0.074 4.074 5 C -0.108 4.108 6 C 0.306 3.694 7 O -0.459 6.459 8 N -0.364 5.364 9 C 0.040 3.960 10 H 0.078 0.922 11 C -0.213 4.213 12 C -0.153 4.153 13 C -0.143 4.143 14 C -0.149 4.149 15 C 0.021 3.979 16 N -0.391 5.391 17 C -0.383 4.383 18 H 0.090 0.910 19 C -0.269 4.269 20 N -0.619 5.619 21 Si 0.805 3.195 22 H -0.211 1.211 23 H -0.219 1.219 24 H -0.196 1.196 25 C -0.342 4.342 26 C -0.133 4.133 27 S 0.395 5.605 28 H 0.108 0.892 29 H 0.123 0.877 30 H 0.106 0.894 31 H 0.135 0.865 32 H 0.161 0.839 33 H 0.252 0.748 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.028 0.972 44 H 0.036 0.964 45 H 0.206 0.794 46 H 0.061 0.939 47 H 0.118 0.882 48 H 0.096 0.904 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.816 -35.476 6.303 36.040 hybrid contribution 0.237 2.166 0.146 2.184 sum -0.578 -33.310 6.449 33.933 Atomic orbital electron populations 1.20573 0.83378 1.05242 1.04538 1.27388 1.03003 0.91042 1.03564 1.66032 1.05366 1.33221 1.16804 1.19630 0.89842 0.93929 1.04007 1.20282 0.99252 0.97002 0.94240 1.20730 0.77852 0.79549 0.91311 1.90694 1.53227 1.54303 1.47711 1.46008 1.45916 1.35127 1.09372 1.20918 0.97966 0.94416 0.82687 0.92237 1.22094 0.98214 0.98847 1.02144 1.21835 0.98191 0.91427 1.03863 1.21420 0.98251 0.92848 1.01816 1.21592 0.97445 0.94537 1.01344 1.20856 0.96234 0.83642 0.97149 1.42619 1.12713 1.01537 1.82259 1.19650 0.94141 0.87481 1.36991 0.90983 1.25628 0.98507 0.99616 1.03191 1.69816 1.18093 1.17845 1.56159 0.85096 0.78374 0.78499 0.77529 1.21082 1.21867 1.19630 1.26032 1.01907 0.95530 1.10692 1.20353 0.86901 1.01894 1.04171 1.83604 0.96813 1.11530 1.68586 0.89180 0.87717 0.89434 0.86467 0.83929 0.74775 0.90862 0.90716 0.93881 0.89376 0.89716 0.93144 0.91552 0.91607 0.92453 0.97182 0.96426 0.79356 0.93864 0.88227 0.90393 0.90316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.46 71.24 0.75 -0.26 16 2 C 0.03 0.56 7.39 88.52 0.65 1.21 16 3 N -0.50 -12.67 10.53 -179.39 -1.89 -14.56 16 4 C 0.06 1.26 5.23 41.52 0.22 1.47 16 5 C -0.07 -1.09 5.63 29.10 0.16 -0.93 16 6 C 0.52 11.26 7.79 87.66 0.68 11.94 16 7 O -0.58 -18.11 15.70 -3.03 -0.05 -18.16 16 8 N -0.71 -11.86 4.53 -442.54 -2.00 -13.86 16 9 C 0.14 2.69 2.57 44.99 0.12 2.81 16 10 H 0.06 1.47 7.58 -2.38 -0.02 1.45 16 11 C -0.15 -2.45 9.48 71.98 0.68 -1.76 16 12 C -0.12 -2.03 4.75 30.59 0.15 -1.89 16 13 C -0.11 -2.52 5.10 30.59 0.16 -2.36 16 14 C -0.11 -3.47 5.33 30.59 0.16 -3.31 16 15 C 0.15 6.15 6.26 86.38 0.54 6.70 16 16 N -0.75 -39.76 5.60 -343.46 -1.92 -41.69 16 17 C -0.25 -14.60 9.99 84.03 0.84 -13.76 16 18 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 19 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 20 N -0.97 -60.25 13.06 21.65 0.28 -59.97 16 21 Si 0.98 47.04 29.55 68.60 2.03 49.07 16 22 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 23 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 24 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 25 C -0.22 -4.01 6.59 24.64 0.16 -3.85 16 26 C -0.07 -0.83 9.81 71.24 0.70 -0.13 16 27 S 0.14 2.27 23.18 -56.49 -1.31 0.96 16 28 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.14 1.26 7.35 -2.39 -0.02 1.25 16 33 H 0.42 4.56 8.60 -92.70 -0.80 3.76 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 36 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.07 1.52 7.75 -2.39 -0.02 1.50 16 41 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.37 20.80 7.67 -92.71 -0.71 20.09 16 46 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 47 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.08 0.88 7.43 -2.39 -0.02 0.86 16 49 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 Total: -1.00 -79.92 418.17 1.01 -78.91 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: -0.56 Total: 27.49 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: 6.43 Total: -8.21 kcal Atomic # 7 Polarization: -124.54 SS G_CDS: -5.54 Total: -130.07 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.05 Total: -18.16 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -1.31 Total: 0.96 kcal Total: -79.92 1.01 -78.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171524762.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.349 kcal (2) G-P(sol) polarization free energy of solvation -79.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds