Wall clock time and date at job start Tue Mar 31 2020 22:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33637 * 122.74769 * 2 1 4 4 S 1.76200 * 107.92285 * 179.97438 * 3 2 1 5 5 C 1.70978 * 90.28264 * 0.27600 * 4 3 2 6 6 C 1.50704 * 124.91898 * 179.84355 * 5 4 3 7 7 C 1.53002 * 109.46838 * 269.99555 * 6 5 4 8 8 C 1.50703 * 109.47140 * 179.97438 * 7 6 5 9 9 O 1.21288 * 119.99760 * 0.02562 * 8 7 6 10 10 N 1.34770 * 119.99928 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00040 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.46922 * 325.00038 * 11 10 8 13 13 C 1.52993 * 109.47132 * 84.99788 * 11 10 8 14 14 C 1.52995 * 109.47226 * 205.00540 * 11 10 8 15 15 C 1.52996 * 109.47642 * 64.99561 * 14 11 10 16 16 C 1.53004 * 109.47227 * 180.02562 * 15 14 11 17 17 C 1.53004 * 109.46785 * 180.02562 * 16 15 14 18 18 N 1.46500 * 109.46797 * 180.02562 * 17 16 15 19 19 C 1.36942 * 119.99953 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99532 * 0.02562 * 19 18 17 21 21 C 1.38810 * 119.99982 * 179.97438 * 19 18 17 22 22 N 1.31621 * 119.99946 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 120.00078 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47337 * 89.99334 * 23 21 19 25 25 H 1.48500 * 109.47256 * 209.99797 * 23 21 19 26 26 H 1.48510 * 109.46973 * 329.99348 * 23 21 19 27 27 N 1.29023 * 110.16660 * 359.83660 * 5 4 3 28 28 H 1.09002 * 109.47152 * 269.70807 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.70907 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.70888 * 1 2 3 31 31 H 1.07996 * 126.04156 * 0.03271 * 3 2 1 32 32 H 1.08998 * 109.47268 * 29.99228 * 6 5 4 33 33 H 1.08998 * 109.47561 * 149.99857 * 6 5 4 34 34 H 1.09000 * 109.47428 * 300.00004 * 7 6 5 35 35 H 1.09004 * 109.47230 * 59.99848 * 7 6 5 36 36 H 0.96999 * 120.00210 * 0.02562 * 10 8 7 37 37 H 1.09009 * 109.47367 * 180.02562 * 13 11 10 38 38 H 1.08995 * 109.47931 * 300.00048 * 13 11 10 39 39 H 1.08993 * 109.47162 * 60.00677 * 13 11 10 40 40 H 1.09000 * 109.47449 * 184.99845 * 14 11 10 41 41 H 1.09007 * 109.46976 * 304.99379 * 14 11 10 42 42 H 1.08997 * 109.47093 * 300.00088 * 15 14 11 43 43 H 1.09007 * 109.47084 * 59.99884 * 15 14 11 44 44 H 1.08997 * 109.47097 * 300.00013 * 16 15 14 45 45 H 1.08997 * 109.46941 * 60.00395 * 16 15 14 46 46 H 1.08997 * 109.47255 * 299.99845 * 17 16 15 47 47 H 1.08997 * 109.47117 * 60.00430 * 17 16 15 48 48 H 0.97001 * 119.99971 * 359.97438 * 18 17 16 49 49 H 0.97000 * 119.99453 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 -0.0072 6 6 4.4835 -2.1271 -0.0141 7 6 4.8134 -2.5074 -1.4589 8 6 5.7934 -3.6522 -1.4659 9 8 6.1886 -4.1184 -0.4183 10 7 6.2297 -4.1586 -2.6361 11 6 7.1819 -5.2719 -2.6429 12 1 7.8672 -5.1690 -1.8015 13 6 6.4216 -6.5941 -2.5225 14 6 7.9749 -5.2568 -3.9512 15 6 8.8318 -3.9909 -4.0137 16 6 9.6243 -3.9756 -5.3224 17 6 10.4817 -2.7098 -5.3846 18 7 11.2401 -2.6949 -6.6379 19 6 12.0820 -1.6513 -6.9164 20 1 12.1871 -0.8396 -6.2118 21 6 12.8009 -1.6374 -8.1037 22 7 13.6097 -0.6341 -8.3716 23 14 12.6195 -3.0417 -9.3220 24 1 11.5211 -2.7336 -10.2727 25 1 13.8897 -3.2137 -10.0719 26 1 12.3035 -4.2945 -8.5898 27 7 2.2199 -1.1083 -0.0064 28 1 -0.3633 -0.0052 1.0277 29 1 -0.3633 -0.8874 -0.5184 30 1 -0.3633 0.8926 -0.5093 31 1 1.8392 2.1308 0.0005 32 1 5.3966 -1.8274 0.5002 33 1 4.0439 -2.9843 0.4958 34 1 3.9003 -2.8071 -1.9733 35 1 5.2530 -1.6502 -1.9690 36 1 5.9133 -3.7860 -3.4739 37 1 7.1302 -7.4225 -2.5270 38 1 5.8567 -6.6049 -1.5904 39 1 5.7364 -6.6971 -3.3638 40 1 8.6198 -6.1345 -3.9954 41 1 7.2846 -5.2703 -4.7947 42 1 8.1871 -3.1132 -3.9696 43 1 9.5222 -3.9774 -3.1703 44 1 10.2691 -4.8533 -5.3670 45 1 8.9337 -3.9888 -6.1656 46 1 9.8373 -1.8319 -5.3398 47 1 11.1724 -2.6971 -4.5415 48 1 11.1459 -3.4241 -7.2706 49 1 14.1118 -0.6243 -9.2015 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171812045.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:35 Heat of formation + Delta-G solvation = -13.040224 kcal Electronic energy + Delta-G solvation = -25653.337607 eV Core-core repulsion = 21934.448321 eV Total energy + Delta-G solvation = -3718.889287 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.42603 -40.00270 -37.19247 -35.48390 -34.55682 -33.33019 -31.94182 -31.23120 -30.49284 -28.06713 -27.78161 -26.53577 -24.25066 -22.82892 -21.83169 -20.97418 -20.85583 -20.62816 -20.10239 -18.12615 -17.53264 -17.31933 -16.54519 -15.97885 -15.51555 -15.36737 -15.08770 -14.68751 -14.42321 -14.24049 -14.05225 -13.70022 -13.55450 -13.37432 -13.19563 -13.05687 -13.00162 -12.80967 -12.69139 -12.42784 -12.29203 -11.93312 -11.69271 -11.68334 -11.56230 -11.47059 -11.18047 -10.88569 -10.86038 -10.42951 -10.35027 -10.13601 -10.09806 -10.00613 -9.78682 -9.58483 -9.29446 -9.08454 -8.88480 -7.21727 -5.76163 -3.11374 0.29195 0.97707 1.36861 2.34573 2.39378 2.90503 3.37225 3.39870 3.44946 3.64281 4.28458 4.46739 4.53209 4.59583 4.63262 4.71313 4.78333 4.83357 4.90031 4.90561 5.10588 5.15115 5.17968 5.25051 5.29807 5.31732 5.34903 5.48098 5.53411 5.54680 5.56642 5.61213 5.65534 5.81132 5.84881 5.85768 6.01869 6.06390 6.13347 6.17135 6.32035 6.35299 6.77196 6.81111 7.24397 7.35492 7.97283 8.00907 8.43209 9.22701 9.95190 10.15438 11.42387 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011343 B = 0.001817 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.913615 B =15403.442131 C =17186.391096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.066 3.934 3 C -0.267 4.267 4 S 0.128 5.872 5 C 0.054 3.946 6 C -0.028 4.028 7 C -0.137 4.137 8 C 0.518 3.482 9 O -0.541 6.541 10 N -0.722 5.722 11 C 0.140 3.860 12 H 0.089 0.911 13 C -0.163 4.163 14 C -0.127 4.127 15 C -0.114 4.114 16 C -0.130 4.130 17 C 0.156 3.844 18 N -0.758 5.758 19 C -0.244 4.244 20 H 0.089 0.911 21 C 0.002 3.998 22 N -0.935 5.935 23 Si 0.886 3.114 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 N -0.471 5.471 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.176 0.824 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.401 0.599 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.024 0.976 47 H 0.025 0.975 48 H 0.360 0.640 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.568 -3.617 18.024 33.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.066 4.066 3 C -0.406 4.406 4 S 0.384 5.616 5 C -0.224 4.224 6 C -0.069 4.069 7 C -0.178 4.178 8 C 0.304 3.696 9 O -0.418 6.418 10 N -0.374 5.374 11 C 0.036 3.964 12 H 0.108 0.892 13 C -0.221 4.221 14 C -0.165 4.165 15 C -0.152 4.152 16 C -0.168 4.168 17 C 0.029 3.971 18 N -0.404 5.404 19 C -0.374 4.374 20 H 0.107 0.893 21 C -0.193 4.193 22 N -0.583 5.583 23 Si 0.717 3.283 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.204 1.204 27 N -0.186 5.186 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.194 0.806 32 H 0.114 0.886 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.236 0.764 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.042 0.958 47 H 0.043 0.957 48 H 0.193 0.807 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -26.405 -3.708 18.817 32.635 hybrid contribution -1.086 -0.590 -1.470 1.921 sum -27.491 -4.298 17.347 32.789 Atomic orbital electron populations 1.20368 0.87064 1.03417 1.03000 1.20337 0.98330 0.86497 1.01447 1.26857 0.95296 1.04062 1.14359 1.84196 1.07111 1.02781 1.67557 1.27038 0.94042 0.98432 1.02920 1.19981 0.95989 0.94111 0.96793 1.21656 0.99916 0.98075 0.98175 1.20456 0.81611 0.83711 0.83838 1.90719 1.58081 1.61508 1.31498 1.46116 1.46648 1.36082 1.08553 1.21043 0.90435 0.85485 0.99435 0.89250 1.22173 1.00901 0.96900 1.02171 1.21943 0.98770 0.99740 0.96085 1.21511 0.98336 0.97041 0.98326 1.21782 0.98677 0.99450 0.96861 1.20630 0.92766 0.94481 0.89214 1.42740 1.52505 1.25429 1.19688 1.19092 1.16133 0.99072 1.03125 0.89271 1.24690 0.99024 0.97708 0.97925 1.69710 1.31285 1.31574 1.25753 0.86515 0.77187 0.82799 0.81839 1.21104 1.21712 1.20364 1.66140 1.04520 1.31681 1.16281 0.90625 0.90520 0.90681 0.80620 0.88573 0.87902 0.88164 0.88344 0.76417 0.91549 0.92216 0.92524 0.90251 0.91378 0.91939 0.91774 0.92112 0.92183 0.95757 0.95738 0.80744 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.31 36.01 0.37 -0.07 16 2 C 0.07 0.55 6.74 -84.22 -0.57 -0.02 16 3 C -0.27 -1.92 11.13 29.12 0.32 -1.59 16 4 S 0.13 0.96 23.18 -107.50 -2.49 -1.53 16 5 C 0.05 0.47 6.64 -13.46 -0.09 0.38 16 6 C -0.03 -0.22 5.09 -27.88 -0.14 -0.36 16 7 C -0.14 -0.96 5.68 -27.88 -0.16 -1.12 16 8 C 0.52 4.87 7.79 -10.99 -0.09 4.78 16 9 O -0.54 -7.04 15.65 5.55 0.09 -6.96 16 10 N -0.72 -5.76 4.53 -53.81 -0.24 -6.01 16 11 C 0.14 1.23 2.57 -67.94 -0.17 1.06 16 12 H 0.09 0.96 7.58 -51.93 -0.39 0.56 16 13 C -0.16 -1.32 9.48 37.15 0.35 -0.97 16 14 C -0.13 -1.10 4.75 -26.74 -0.13 -1.23 16 15 C -0.11 -1.26 5.10 -26.73 -0.14 -1.40 16 16 C -0.13 -1.86 5.33 -26.73 -0.14 -2.01 16 17 C 0.16 3.02 6.26 -4.04 -0.03 2.99 16 18 N -0.76 -18.39 5.41 -59.91 -0.32 -18.71 16 19 C -0.24 -7.07 10.47 -15.06 -0.16 -7.23 16 20 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 21 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 22 N -0.94 -29.70 13.97 55.49 0.78 -28.92 16 23 Si 0.89 22.28 27.74 -169.99 -4.71 17.56 16 24 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 27 N -0.47 -4.69 10.53 -8.06 -0.08 -4.77 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.28 8.12 -51.93 -0.42 -0.14 16 31 H 0.18 0.83 8.06 -52.49 -0.42 0.40 16 32 H 0.10 0.75 8.10 -51.93 -0.42 0.33 16 33 H 0.10 0.91 8.10 -51.93 -0.42 0.49 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.40 2.38 8.60 -40.82 -0.35 2.03 16 37 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.66 7.75 -51.93 -0.40 0.26 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.36 8.45 5.53 -40.82 -0.23 8.23 16 49 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 416.78 15.07 6.28 6.28 Total: -1.00 -35.39 416.78 -10.14 -45.53 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -8.57 Total: 4.35 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -0.85 Total: -6.81 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: 0.12 Total: -58.41 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: 0.09 Total: -6.96 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.71 Total: 17.56 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.49 Total: -1.53 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -35.39 -10.14 -45.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171812045.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.485 kcal (2) G-P(sol) polarization free energy of solvation -35.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds