Wall clock time and date at job start Tue Mar 31 2020 22:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29028 * 124.91508 * 2 1 4 4 C 1.31788 * 117.12201 * 180.02562 * 3 2 1 5 5 C 1.50700 * 122.74696 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47208 * 305.02170 * 5 4 3 7 7 C 1.50700 * 109.47208 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99803 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99675 * 180.27843 * 7 6 5 10 10 C 1.46497 * 119.99525 * 179.72583 * 9 7 6 11 11 H 1.09001 * 109.47884 * 324.99780 * 10 9 7 12 12 C 1.53008 * 109.47335 * 84.99977 * 10 9 7 13 13 C 1.53001 * 109.47201 * 204.99403 * 10 9 7 14 14 C 1.53006 * 109.46654 * 64.99997 * 13 10 9 15 15 C 1.52998 * 109.47160 * 180.02562 * 14 13 10 16 16 C 1.52994 * 109.47446 * 180.02562 * 15 14 13 17 17 N 1.46505 * 109.47261 * 180.02562 * 16 15 14 18 18 C 1.36937 * 119.99584 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00671 * 0.02562 * 18 17 16 20 20 C 1.38816 * 119.99745 * 179.97438 * 18 17 16 21 21 N 1.31629 * 119.99786 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99993 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47287 * 59.99996 * 22 20 18 24 24 H 1.48506 * 109.46723 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47079 * 299.99613 * 22 20 18 26 26 C 1.33640 * 114.50295 * 0.23015 * 4 3 2 27 27 S 1.70983 * 124.92029 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.46770 * 90.00268 * 1 2 3 29 29 H 1.09006 * 109.46588 * 210.00161 * 1 2 3 30 30 H 1.08993 * 109.46806 * 329.99808 * 1 2 3 31 31 H 1.09000 * 109.47500 * 185.02174 * 5 4 3 32 32 H 1.08998 * 109.47585 * 65.02169 * 5 4 3 33 33 H 1.09009 * 109.46730 * 59.99906 * 6 5 4 34 34 H 1.08998 * 109.46846 * 300.00451 * 6 5 4 35 35 H 0.97000 * 119.99894 * 359.71837 * 9 7 6 36 36 H 1.08995 * 109.47273 * 180.02562 * 12 10 9 37 37 H 1.08998 * 109.46811 * 299.99762 * 12 10 9 38 38 H 1.08994 * 109.47201 * 59.99659 * 12 10 9 39 39 H 1.09000 * 109.47404 * 185.00044 * 13 10 9 40 40 H 1.09001 * 109.47466 * 305.00513 * 13 10 9 41 41 H 1.09000 * 109.47254 * 300.00139 * 14 13 10 42 42 H 1.09001 * 109.46763 * 60.00085 * 14 13 10 43 43 H 1.09000 * 109.47070 * 300.00153 * 15 14 13 44 44 H 1.09006 * 109.46982 * 59.99957 * 15 14 13 45 45 H 1.09000 * 109.47031 * 300.00080 * 16 15 14 46 46 H 1.09006 * 109.47145 * 59.99959 * 16 15 14 47 47 H 0.97001 * 119.99746 * 359.97438 * 17 16 15 48 48 H 0.96996 * 119.99701 * 180.02562 * 21 20 18 49 49 H 1.07995 * 126.03715 * 179.76694 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5307 2.0246 -0.0012 6 6 4.2326 2.9500 -1.1825 7 6 5.2125 4.0950 -1.1835 8 8 6.0651 4.1642 -0.3237 9 7 5.1376 5.0452 -2.1364 10 6 6.0864 6.1614 -2.1338 11 1 6.3231 6.4349 -1.1056 12 6 7.3677 5.7434 -2.8582 13 6 5.4640 7.3615 -2.8503 14 6 4.2534 7.8574 -2.0569 15 6 3.6306 9.0571 -2.7736 16 6 2.4204 9.5535 -1.9799 17 7 1.8237 10.7019 -2.6666 18 6 0.7210 11.3182 -2.1381 19 1 0.2914 10.9582 -1.2150 20 6 0.1559 12.4067 -2.7884 21 7 0.6803 12.8466 -3.9127 22 14 -1.3479 13.2480 -2.0672 23 1 -1.0235 13.7672 -0.7143 24 1 -1.7541 14.3741 -2.9460 25 1 -2.4619 12.2711 -1.9685 26 6 3.9355 -0.4006 -0.0059 27 16 2.4858 -1.4020 -0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5138 31 1 5.5449 1.6354 -0.0915 32 1 4.4376 2.5830 0.9303 33 1 3.2184 3.3393 -1.0922 34 1 4.3258 2.3917 -2.1140 35 1 4.4555 4.9900 -2.8238 36 1 8.0738 6.5737 -2.8559 37 1 7.8111 4.8884 -2.3478 38 1 7.1311 5.4700 -3.8864 39 1 6.2008 8.1612 -2.9268 40 1 5.1462 7.0635 -3.8495 41 1 3.5167 7.0578 -1.9804 42 1 4.5712 8.1555 -1.0577 43 1 4.3671 9.8569 -2.8504 44 1 3.3128 8.7586 -3.7726 45 1 1.6838 8.7538 -1.9027 46 1 2.7387 9.8521 -0.9810 47 1 2.2102 11.0260 -3.4951 48 1 0.2857 13.6073 -4.3669 49 1 4.9545 -0.7580 -0.0108 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175556063.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:07 Heat of formation + Delta-G solvation = -17.005984 kcal Electronic energy + Delta-G solvation = -25710.887914 eV Core-core repulsion = 21991.826659 eV Total energy + Delta-G solvation = -3719.061255 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.49511 -39.83894 -37.03516 -35.25166 -34.22845 -33.22870 -31.99319 -31.13328 -30.18300 -28.68291 -27.42409 -25.75925 -24.16619 -22.95528 -22.09013 -20.90257 -20.66270 -20.51845 -20.06297 -17.92498 -17.28550 -16.97932 -16.43934 -15.87562 -15.47095 -15.34343 -14.98445 -14.68479 -14.33505 -14.16513 -13.88022 -13.67952 -13.50277 -13.40700 -13.12755 -13.07738 -12.91309 -12.72825 -12.60324 -12.34343 -12.16611 -11.84075 -11.73268 -11.44923 -11.31942 -11.23289 -10.96892 -10.77299 -10.67789 -10.41222 -10.27487 -10.01565 -9.99660 -9.94948 -9.79665 -9.63492 -9.18946 -9.06665 -8.82629 -6.87482 -5.72714 -3.00989 0.31311 0.96063 1.33157 2.37214 2.51508 3.05679 3.46735 3.50441 3.51989 3.65713 4.39381 4.53733 4.61705 4.66368 4.69669 4.82987 4.85217 4.92576 4.97854 5.01573 5.03460 5.20335 5.27849 5.29368 5.44123 5.44548 5.47594 5.57653 5.63438 5.64976 5.71254 5.72874 5.81446 5.89486 5.92861 5.98209 6.13200 6.26791 6.33888 6.41439 6.43700 6.50062 6.93069 6.96967 7.35468 7.37904 7.73151 8.09097 8.46785 9.57292 10.16774 10.51468 11.50336 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009398 B = 0.001855 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.630786 B =15090.817730 C =17710.324714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.054 3.946 3 N -0.469 5.469 4 C 0.074 3.926 5 C -0.027 4.027 6 C -0.134 4.134 7 C 0.515 3.485 8 O -0.545 6.545 9 N -0.723 5.723 10 C 0.140 3.860 11 H 0.088 0.912 12 C -0.162 4.162 13 C -0.127 4.127 14 C -0.114 4.114 15 C -0.125 4.125 16 C 0.152 3.848 17 N -0.735 5.735 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.017 4.017 21 N -0.935 5.935 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.260 4.260 27 S 0.108 5.892 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.401 0.599 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.383 0.617 48 H 0.255 0.745 49 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.067 -32.051 4.215 33.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.225 4.225 3 N -0.184 5.184 4 C -0.058 4.058 5 C -0.067 4.067 6 C -0.174 4.174 7 C 0.302 3.698 8 O -0.422 6.422 9 N -0.375 5.375 10 C 0.035 3.965 11 H 0.106 0.894 12 C -0.221 4.221 13 C -0.165 4.165 14 C -0.152 4.152 15 C -0.163 4.163 16 C 0.025 3.975 17 N -0.379 5.379 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.212 4.212 21 N -0.584 5.584 22 Si 0.739 3.261 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.399 4.399 27 S 0.363 5.637 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.122 0.878 34 H 0.109 0.891 35 H 0.235 0.765 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.216 0.784 48 H 0.065 0.935 49 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 9.076 -32.520 4.945 34.123 hybrid contribution -0.427 1.256 -0.322 1.365 sum 8.649 -31.264 4.624 32.767 Atomic orbital electron populations 1.20484 0.84987 1.04419 1.04136 1.27107 1.01886 0.90813 1.02647 1.66105 1.04477 1.31547 1.16284 1.20312 0.90128 0.94250 1.01064 1.19909 0.95653 0.91837 0.99328 1.21579 1.00350 0.95195 1.00304 1.20636 0.84971 0.83304 0.80892 1.90697 1.37371 1.76855 1.37303 1.46137 1.35306 1.25161 1.30846 1.21041 0.88523 0.85722 1.01166 0.89380 1.22169 0.97379 1.02080 1.00435 1.21938 0.98566 0.96642 0.99325 1.21518 0.96454 0.98060 0.99167 1.21725 0.98202 0.96920 0.99484 1.20652 0.92195 0.90163 0.94537 1.42384 1.33656 1.33773 1.28064 1.19217 1.03769 1.08939 1.05046 0.91281 1.24757 0.99818 0.99117 0.97550 1.69658 1.42595 1.28120 1.18047 0.86245 0.82832 0.78965 0.78031 1.21277 1.21686 1.21285 1.26831 1.03172 0.95702 1.14204 1.83996 0.98074 1.12992 1.68688 0.89358 0.90066 0.88986 0.89479 0.89165 0.87787 0.89126 0.76458 0.91572 0.92346 0.92550 0.90272 0.91385 0.92099 0.92010 0.92086 0.92150 0.96608 0.96578 0.78358 0.93522 0.80549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.46 36.01 0.38 -0.03 16 2 C 0.05 0.43 7.39 -13.46 -0.10 0.33 16 3 N -0.47 -4.71 10.34 -8.05 -0.08 -4.80 16 4 C 0.07 0.67 6.08 -84.22 -0.51 0.16 16 5 C -0.03 -0.24 5.00 -27.88 -0.14 -0.38 16 6 C -0.13 -1.12 5.60 -27.88 -0.16 -1.28 16 7 C 0.52 5.48 7.79 -10.98 -0.09 5.39 16 8 O -0.54 -7.69 15.64 5.55 0.09 -7.60 16 9 N -0.72 -6.67 4.53 -53.80 -0.24 -6.91 16 10 C 0.14 1.39 2.57 -67.93 -0.17 1.21 16 11 H 0.09 1.05 7.58 -51.93 -0.39 0.66 16 12 C -0.16 -1.45 9.48 37.16 0.35 -1.10 16 13 C -0.13 -1.27 4.75 -26.73 -0.13 -1.39 16 14 C -0.11 -1.44 5.10 -26.73 -0.14 -1.57 16 15 C -0.13 -2.03 5.33 -26.74 -0.14 -2.17 16 16 C 0.15 3.19 6.26 -4.04 -0.03 3.16 16 17 N -0.73 -19.43 5.60 -59.90 -0.34 -19.77 16 18 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 19 H 0.07 1.95 7.83 -52.49 -0.41 1.53 16 20 C -0.02 -0.50 5.50 -17.42 -0.10 -0.59 16 21 N -0.94 -28.90 13.06 55.49 0.72 -28.18 16 22 Si 0.91 22.89 29.55 -169.99 -5.02 17.86 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 C -0.26 -1.93 11.07 29.12 0.32 -1.61 16 27 S 0.11 0.71 23.18 -107.50 -2.49 -1.79 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.71 7.98 -51.93 -0.41 0.29 16 32 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 33 H 0.10 0.91 8.08 -51.92 -0.42 0.49 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.40 2.94 8.60 -40.82 -0.35 2.59 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.75 7.75 -51.93 -0.40 0.35 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.38 10.54 7.67 -40.82 -0.31 10.22 16 48 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 49 H 0.18 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 419.57 15.07 6.32 6.32 Total: -1.00 -34.96 419.57 -10.44 -45.40 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -8.60 Total: 6.39 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -0.79 Total: -6.94 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 0.06 Total: -59.65 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: 0.09 Total: -7.60 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.86 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -2.49 Total: -1.79 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -34.96 -10.44 -45.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175556063.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.398 kcal (2) G-P(sol) polarization free energy of solvation -34.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds