Wall clock time and date at job start Tue Mar 31 2020 22:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29028 * 124.91508 * 2 1 4 4 C 1.31788 * 117.12201 * 180.02562 * 3 2 1 5 5 C 1.50700 * 122.74696 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47208 * 305.02170 * 5 4 3 7 7 C 1.50700 * 109.47208 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99803 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99675 * 180.27843 * 7 6 5 10 10 C 1.46497 * 119.99525 * 179.72583 * 9 7 6 11 11 H 1.09001 * 109.47884 * 324.99780 * 10 9 7 12 12 C 1.53008 * 109.47335 * 84.99977 * 10 9 7 13 13 C 1.53001 * 109.47201 * 204.99403 * 10 9 7 14 14 C 1.53006 * 109.46654 * 64.99997 * 13 10 9 15 15 C 1.52998 * 109.47160 * 180.02562 * 14 13 10 16 16 C 1.52994 * 109.47446 * 180.02562 * 15 14 13 17 17 N 1.46505 * 109.47261 * 180.02562 * 16 15 14 18 18 C 1.36937 * 119.99584 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00671 * 0.02562 * 18 17 16 20 20 C 1.38816 * 119.99745 * 179.97438 * 18 17 16 21 21 N 1.31629 * 119.99786 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99993 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47287 * 59.99996 * 22 20 18 24 24 H 1.48506 * 109.46723 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47079 * 299.99613 * 22 20 18 26 26 C 1.33640 * 114.50295 * 0.23015 * 4 3 2 27 27 S 1.70983 * 124.92029 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.46770 * 90.00268 * 1 2 3 29 29 H 1.09006 * 109.46588 * 210.00161 * 1 2 3 30 30 H 1.08993 * 109.46806 * 329.99808 * 1 2 3 31 31 H 1.09000 * 109.47500 * 185.02174 * 5 4 3 32 32 H 1.08998 * 109.47585 * 65.02169 * 5 4 3 33 33 H 1.09009 * 109.46730 * 59.99906 * 6 5 4 34 34 H 1.08998 * 109.46846 * 300.00451 * 6 5 4 35 35 H 0.97000 * 119.99894 * 359.71837 * 9 7 6 36 36 H 1.08995 * 109.47273 * 180.02562 * 12 10 9 37 37 H 1.08998 * 109.46811 * 299.99762 * 12 10 9 38 38 H 1.08994 * 109.47201 * 59.99659 * 12 10 9 39 39 H 1.09000 * 109.47404 * 185.00044 * 13 10 9 40 40 H 1.09001 * 109.47466 * 305.00513 * 13 10 9 41 41 H 1.09000 * 109.47254 * 300.00139 * 14 13 10 42 42 H 1.09001 * 109.46763 * 60.00085 * 14 13 10 43 43 H 1.09000 * 109.47070 * 300.00153 * 15 14 13 44 44 H 1.09006 * 109.46982 * 59.99957 * 15 14 13 45 45 H 1.09000 * 109.47031 * 300.00080 * 16 15 14 46 46 H 1.09006 * 109.47145 * 59.99959 * 16 15 14 47 47 H 0.97001 * 119.99746 * 359.97438 * 17 16 15 48 48 H 0.96996 * 119.99701 * 180.02562 * 21 20 18 49 49 H 1.07995 * 126.03715 * 179.76694 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5307 2.0246 -0.0012 6 6 4.2326 2.9500 -1.1825 7 6 5.2125 4.0950 -1.1835 8 8 6.0651 4.1642 -0.3237 9 7 5.1376 5.0452 -2.1364 10 6 6.0864 6.1614 -2.1338 11 1 6.3231 6.4349 -1.1056 12 6 7.3677 5.7434 -2.8582 13 6 5.4640 7.3615 -2.8503 14 6 4.2534 7.8574 -2.0569 15 6 3.6306 9.0571 -2.7736 16 6 2.4204 9.5535 -1.9799 17 7 1.8237 10.7019 -2.6666 18 6 0.7210 11.3182 -2.1381 19 1 0.2914 10.9582 -1.2150 20 6 0.1559 12.4067 -2.7884 21 7 0.6803 12.8466 -3.9127 22 14 -1.3479 13.2480 -2.0672 23 1 -1.0235 13.7672 -0.7143 24 1 -1.7541 14.3741 -2.9460 25 1 -2.4619 12.2711 -1.9685 26 6 3.9355 -0.4006 -0.0059 27 16 2.4858 -1.4020 -0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5138 31 1 5.5449 1.6354 -0.0915 32 1 4.4376 2.5830 0.9303 33 1 3.2184 3.3393 -1.0922 34 1 4.3258 2.3917 -2.1140 35 1 4.4555 4.9900 -2.8238 36 1 8.0738 6.5737 -2.8559 37 1 7.8111 4.8884 -2.3478 38 1 7.1311 5.4700 -3.8864 39 1 6.2008 8.1612 -2.9268 40 1 5.1462 7.0635 -3.8495 41 1 3.5167 7.0578 -1.9804 42 1 4.5712 8.1555 -1.0577 43 1 4.3671 9.8569 -2.8504 44 1 3.3128 8.7586 -3.7726 45 1 1.6838 8.7538 -1.9027 46 1 2.7387 9.8521 -0.9810 47 1 2.2102 11.0260 -3.4951 48 1 0.2857 13.6073 -4.3669 49 1 4.9545 -0.7580 -0.0108 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175556063.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:06 Heat of formation + Delta-G solvation = -39.383471 kcal Electronic energy + Delta-G solvation = -25711.858275 eV Core-core repulsion = 21991.826659 eV Total energy + Delta-G solvation = -3720.031616 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.18781 -40.60033 -38.08607 -36.84219 -34.89101 -34.76431 -33.07354 -32.27793 -31.33920 -29.22831 -28.81685 -26.48050 -25.85246 -23.84673 -23.33663 -22.06484 -21.77412 -21.35766 -20.64038 -19.13121 -18.53760 -18.03957 -17.29398 -16.69756 -16.63053 -16.21939 -16.06790 -15.95624 -15.41567 -15.31702 -15.01899 -14.74117 -14.56316 -14.34445 -14.11160 -14.03138 -13.94919 -13.51001 -13.22363 -13.06307 -12.99605 -12.88437 -12.84227 -12.79968 -12.45081 -12.44628 -12.26618 -12.20270 -12.00419 -11.88407 -11.80910 -11.49593 -11.39197 -10.93841 -10.84499 -10.59661 -10.36121 -10.03108 -9.62413 -9.02399 -7.97037 -5.26526 -0.24421 0.43853 0.77001 1.45899 1.49639 1.55913 1.67641 1.74971 2.29682 2.54933 3.13685 3.35772 3.59363 3.76789 3.96633 4.03222 4.05512 4.07476 4.13472 4.22455 4.35882 4.36190 4.42473 4.50539 4.59958 4.63136 4.64516 4.66715 4.67754 4.79813 4.87381 4.93696 4.95618 4.99158 5.01674 5.03547 5.09457 5.14019 5.26415 5.28826 5.33105 5.44994 5.45057 5.52247 5.63053 6.25655 6.59864 6.80385 7.29759 7.31234 8.07692 8.31605 9.26267 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009398 B = 0.001855 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.630786 B =15090.817730 C =17710.324714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.038 3.962 3 N -0.502 5.502 4 C 0.054 3.946 5 C -0.022 4.022 6 C -0.123 4.123 7 C 0.514 3.486 8 O -0.584 6.584 9 N -0.715 5.715 10 C 0.142 3.858 11 H 0.066 0.934 12 C -0.156 4.156 13 C -0.116 4.116 14 C -0.105 4.105 15 C -0.112 4.112 16 C 0.148 3.852 17 N -0.749 5.749 18 C -0.252 4.252 19 H 0.073 0.927 20 C -0.077 4.077 21 N -0.969 5.969 22 Si 0.977 3.023 23 H -0.278 1.278 24 H -0.292 1.292 25 H -0.276 1.276 26 C -0.264 4.264 27 S 0.148 5.852 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.413 0.587 36 H 0.074 0.926 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.017 0.983 46 H 0.012 0.988 47 H 0.374 0.626 48 H 0.253 0.747 49 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.694 -33.650 3.840 34.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.240 4.240 3 N -0.219 5.219 4 C -0.077 4.077 5 C -0.063 4.063 6 C -0.163 4.163 7 C 0.302 3.698 8 O -0.464 6.464 9 N -0.367 5.367 10 C 0.038 3.962 11 H 0.084 0.916 12 C -0.214 4.214 13 C -0.154 4.154 14 C -0.143 4.143 15 C -0.150 4.150 16 C 0.021 3.979 17 N -0.391 5.391 18 C -0.384 4.384 19 H 0.091 0.909 20 C -0.269 4.269 21 N -0.619 5.619 22 Si 0.805 3.195 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.202 1.202 26 C -0.403 4.403 27 S 0.403 5.597 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.119 0.881 34 H 0.129 0.871 35 H 0.249 0.751 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.035 0.965 46 H 0.030 0.970 47 H 0.206 0.794 48 H 0.061 0.939 49 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 8.693 -34.152 4.575 35.537 hybrid contribution -0.303 1.672 -0.171 1.708 sum 8.390 -32.480 4.404 33.834 Atomic orbital electron populations 1.20610 0.83391 1.05080 1.04995 1.27588 1.03115 0.91179 1.02127 1.66109 1.05083 1.32984 1.17686 1.20325 0.90052 0.94793 1.02520 1.19813 0.96079 0.91905 0.98489 1.21508 0.99258 0.94425 1.01101 1.21002 0.84696 0.83756 0.80365 1.90680 1.39091 1.77791 1.38840 1.46101 1.35302 1.24540 1.30741 1.20950 0.89256 0.85899 1.00101 0.91601 1.22103 0.96733 1.01841 1.00740 1.21840 0.97400 0.96692 0.99470 1.21422 0.97482 0.96631 0.98763 1.21597 0.96143 0.98045 0.99195 1.20857 0.93831 0.88507 0.94666 1.42618 1.33410 1.35065 1.28044 1.19624 1.04475 1.09155 1.05138 0.90937 1.25636 1.03069 1.00070 0.98165 1.69815 1.44126 1.28596 1.19393 0.85163 0.79256 0.77726 0.77326 1.20423 1.21805 1.20241 1.27139 1.04660 0.95539 1.12986 1.83816 0.96785 1.11520 1.67623 0.88312 0.88030 0.89699 0.89016 0.91291 0.88060 0.87132 0.75090 0.90696 0.93724 0.91173 0.89632 0.89802 0.91665 0.92756 0.92408 0.91830 0.96492 0.97001 0.79392 0.93874 0.78695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.46 71.24 0.75 0.02 16 2 C 0.04 0.56 7.39 88.52 0.65 1.22 16 3 N -0.50 -9.98 10.34 -179.39 -1.86 -11.83 16 4 C 0.05 0.97 6.08 41.52 0.25 1.22 16 5 C -0.02 -0.40 5.00 29.85 0.15 -0.25 16 6 C -0.12 -2.01 5.60 29.85 0.17 -1.84 16 7 C 0.51 10.78 7.79 87.66 0.68 11.46 16 8 O -0.58 -16.79 15.64 -3.04 -0.05 -16.84 16 9 N -0.71 -12.36 4.53 -442.52 -2.00 -14.37 16 10 C 0.14 2.67 2.57 45.00 0.12 2.78 16 11 H 0.07 1.56 7.58 -2.39 -0.02 1.54 16 12 C -0.16 -2.54 9.48 71.98 0.68 -1.86 16 13 C -0.12 -2.09 4.75 30.60 0.15 -1.95 16 14 C -0.10 -2.51 5.10 30.60 0.16 -2.35 16 15 C -0.11 -3.51 5.33 30.59 0.16 -3.35 16 16 C 0.15 6.16 6.26 86.38 0.54 6.70 16 17 N -0.75 -39.80 5.60 -343.44 -1.92 -41.73 16 18 C -0.25 -14.67 9.99 84.03 0.84 -13.83 16 19 H 0.07 4.07 7.83 -2.91 -0.02 4.04 16 20 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 21 N -0.97 -60.32 13.06 21.65 0.28 -60.03 16 22 Si 0.98 46.97 29.55 68.60 2.03 49.00 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 24 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 25 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 26 C -0.26 -3.62 11.07 66.78 0.74 -2.88 16 27 S 0.15 1.69 23.18 -56.49 -1.31 0.38 16 28 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.09 1.50 7.98 -2.39 -0.02 1.48 16 32 H 0.07 1.50 8.10 -2.39 -0.02 1.48 16 33 H 0.10 1.74 8.08 -2.38 -0.02 1.72 16 34 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.41 5.25 8.60 -92.71 -0.80 4.46 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.06 1.51 7.75 -2.39 -0.02 1.49 16 42 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 45 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 47 H 0.37 20.84 7.67 -92.71 -0.71 20.13 16 48 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 49 H 0.20 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -75.35 419.57 1.10 -74.26 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: -0.57 Total: 30.16 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: 6.50 Total: -8.99 kcal Atomic # 7 Polarization: -122.46 SS G_CDS: -5.50 Total: -127.96 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.05 Total: -16.84 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -1.31 Total: 0.38 kcal Total: -75.35 1.10 -74.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175556063.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.872 kcal (2) G-P(sol) polarization free energy of solvation -75.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds