Wall clock time and date at job start Tue Mar 31 2020 23:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47359 * 2 1 4 4 N 1.29431 * 124.79986 * 90.01707 * 3 2 1 5 5 C 1.30944 * 117.36018 * 179.97438 * 4 3 2 6 6 C 1.50701 * 122.90454 * 180.02562 * 5 4 3 7 7 C 1.35668 * 114.19279 * 0.02562 * 5 4 3 8 8 C 1.46677 * 126.13002 * 179.97438 * 7 5 4 9 9 O 1.21682 * 120.00109 * 359.72831 * 8 7 5 10 10 N 1.34784 * 119.99881 * 179.97438 * 8 7 5 11 11 C 1.46499 * 119.99893 * 179.72848 * 10 8 7 12 12 H 1.08990 * 109.47400 * 34.99963 * 11 10 8 13 13 C 1.52998 * 109.46843 * 274.99901 * 11 10 8 14 14 C 1.52997 * 109.46833 * 155.00334 * 11 10 8 15 15 C 1.53001 * 109.47001 * 294.99594 * 14 11 10 16 16 C 1.53000 * 109.47252 * 180.02562 * 15 14 11 17 17 C 1.53001 * 109.47252 * 180.02562 * 16 15 14 18 18 N 1.46498 * 109.47181 * 179.97438 * 17 16 15 19 19 C 1.36938 * 120.00300 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99460 * 359.97438 * 19 18 17 21 21 C 1.38812 * 120.00390 * 180.02562 * 19 18 17 22 22 N 1.31616 * 120.00022 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99862 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.47272 * 90.00421 * 23 21 19 25 25 H 1.48504 * 109.46942 * 210.00608 * 23 21 19 26 26 H 1.48502 * 109.47242 * 330.00332 * 23 21 19 27 27 S 1.70949 * 124.80630 * 270.29854 * 3 2 1 28 28 H 1.08996 * 109.47643 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47541 * 300.00338 * 1 2 3 30 30 H 1.09006 * 109.47214 * 60.00079 * 1 2 3 31 31 H 1.08996 * 109.47541 * 239.99662 * 2 1 3 32 32 H 1.09001 * 109.46778 * 119.99758 * 2 1 3 33 33 H 1.09001 * 109.47482 * 269.96312 * 6 5 4 34 34 H 1.09000 * 109.47018 * 29.96727 * 6 5 4 35 35 H 1.09000 * 109.46954 * 149.95990 * 6 5 4 36 36 H 0.97005 * 119.99846 * 359.72636 * 10 8 7 37 37 H 1.08997 * 109.47450 * 60.00399 * 13 11 10 38 38 H 1.08998 * 109.47317 * 180.02562 * 13 11 10 39 39 H 1.09007 * 109.47248 * 300.00110 * 13 11 10 40 40 H 1.08991 * 109.47642 * 54.99647 * 14 11 10 41 41 H 1.09005 * 109.47281 * 174.99715 * 14 11 10 42 42 H 1.09003 * 109.47143 * 300.00112 * 15 14 11 43 43 H 1.08991 * 109.47075 * 60.00135 * 15 14 11 44 44 H 1.09003 * 109.46744 * 299.99874 * 16 15 14 45 45 H 1.09000 * 109.47138 * 59.99996 * 16 15 14 46 46 H 1.09003 * 109.47143 * 299.99630 * 17 16 15 47 47 H 1.09000 * 109.47052 * 59.99943 * 17 16 15 48 48 H 0.97004 * 120.00001 * 0.02562 * 18 17 16 49 49 H 0.97001 * 119.99726 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2789 2.1171 1.0628 5 6 2.7122 3.3411 0.8933 6 6 3.0384 4.2606 2.0419 7 6 2.8422 3.7099 -0.4058 8 6 3.3033 5.0145 -0.8925 9 8 3.6067 5.8869 -0.1002 10 7 3.3861 5.2488 -2.2172 11 6 3.8410 6.5538 -2.7033 12 1 4.6016 6.9476 -2.0292 13 6 2.6559 7.5200 -2.7552 14 6 4.4335 6.3975 -4.1052 15 6 5.6925 5.5311 -4.0332 16 6 6.2853 5.3754 -5.4350 17 6 7.5440 4.5085 -5.3631 18 7 8.1113 4.3589 -6.7054 19 6 9.2492 3.6195 -6.8894 20 1 9.7285 3.1471 -6.0448 21 6 9.7870 3.4782 -8.1613 22 7 10.8804 2.7671 -8.3381 23 14 8.9582 4.2960 -9.6220 24 1 9.5158 5.6596 -9.8080 25 1 9.2029 3.4900 -10.8451 26 1 7.4969 4.3883 -9.3743 27 16 2.3508 2.3432 -1.4036 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.1485 4.8258 2.3189 34 1 3.3747 3.6712 2.8949 35 1 3.8280 4.9498 1.7426 36 1 3.1446 4.5532 -2.8488 37 1 2.2337 7.6313 -1.7565 38 1 2.9941 8.4908 -3.1173 39 1 1.8952 7.1261 -3.4294 40 1 3.7018 5.9215 -4.7579 41 1 4.6904 7.3795 -4.5026 42 1 6.4243 6.0072 -3.3804 43 1 5.4356 4.5493 -3.6358 44 1 5.5537 4.8995 -6.0880 45 1 6.5423 6.3575 -5.8320 46 1 8.2758 4.9839 -4.7099 47 1 7.2866 3.5265 -4.9663 48 1 7.6813 4.7842 -7.4639 49 1 11.2564 2.6687 -9.2269 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175680973.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:40 Heat of formation + Delta-G solvation = -11.002369 kcal Electronic energy + Delta-G solvation = -26375.003308 eV Core-core repulsion = 22656.202389 eV Total energy + Delta-G solvation = -3718.800919 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.76953 -39.66625 -37.11015 -35.47956 -34.72196 -33.38336 -31.88385 -31.19790 -30.65843 -28.38833 -27.79895 -25.92576 -24.34579 -22.90028 -22.32978 -21.62368 -20.96969 -20.82346 -19.84617 -18.34175 -17.52732 -17.16830 -16.50599 -15.94248 -15.38170 -15.01937 -14.91480 -14.77118 -14.58079 -14.23147 -14.05285 -13.86637 -13.60956 -13.46197 -13.24185 -13.09235 -12.82070 -12.73878 -12.48842 -12.34382 -12.17545 -11.94469 -11.71614 -11.70681 -11.67198 -11.48499 -11.20109 -10.90757 -10.85981 -10.44269 -10.38822 -10.34190 -10.11027 -10.01336 -9.88834 -9.58509 -9.40352 -9.07175 -8.88465 -7.21803 -5.76018 -3.11279 -0.13659 0.77625 1.18283 2.07877 2.78552 2.86414 3.37050 3.39823 3.44768 3.52950 4.33396 4.36051 4.53998 4.59460 4.59578 4.65509 4.74138 4.81686 4.87167 5.03308 5.15188 5.27132 5.29575 5.30603 5.37603 5.39423 5.45911 5.47143 5.51871 5.55873 5.58637 5.62428 5.65511 5.77162 5.83699 5.98082 6.01479 6.05374 6.11948 6.16385 6.26410 6.34377 6.77165 6.80898 7.08607 7.27634 7.83454 8.01027 8.43311 9.22734 9.95171 10.15486 11.42570 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011398 B = 0.002246 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.945964 B =12463.747128 C =13870.045573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.053 4.053 3 C 0.071 3.929 4 N -0.478 5.478 5 C 0.153 3.847 6 C -0.090 4.090 7 C -0.305 4.305 8 C 0.601 3.399 9 O -0.523 6.523 10 N -0.717 5.717 11 C 0.142 3.858 12 H 0.093 0.907 13 C -0.163 4.163 14 C -0.128 4.128 15 C -0.115 4.115 16 C -0.129 4.129 17 C 0.156 3.844 18 N -0.758 5.758 19 C -0.244 4.244 20 H 0.089 0.911 21 C 0.002 3.998 22 N -0.935 5.935 23 Si 0.886 3.114 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 S 0.161 5.839 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.398 0.602 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.025 0.975 47 H 0.024 0.976 48 H 0.360 0.640 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.080 1.087 18.031 31.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.094 4.094 3 C -0.205 4.205 4 N -0.193 5.193 5 C 0.015 3.985 6 C -0.149 4.149 7 C -0.429 4.429 8 C 0.386 3.614 9 O -0.402 6.402 10 N -0.369 5.369 11 C 0.038 3.962 12 H 0.111 0.889 13 C -0.222 4.222 14 C -0.166 4.166 15 C -0.154 4.154 16 C -0.167 4.167 17 C 0.029 3.971 18 N -0.404 5.404 19 C -0.374 4.374 20 H 0.107 0.893 21 C -0.194 4.194 22 N -0.583 5.583 23 Si 0.717 3.283 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.204 1.204 27 S 0.419 5.581 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.232 0.768 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.043 0.957 47 H 0.042 0.958 48 H 0.193 0.807 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -25.815 1.117 18.014 31.499 hybrid contribution -0.382 0.587 -0.854 1.104 sum -26.197 1.703 17.160 31.363 Atomic orbital electron populations 1.21783 0.93041 1.02977 1.02793 1.20357 0.97019 0.87038 1.04966 1.27459 1.00180 1.01800 0.91033 1.66098 1.16032 1.05890 1.31232 1.20697 0.93725 0.90395 0.93706 1.20675 1.03613 0.97029 0.93562 1.25449 1.19356 1.00760 0.97294 1.16632 0.77271 0.84861 0.82588 1.90783 1.49686 1.44858 1.54840 1.46017 1.68183 1.16541 1.06122 1.21103 0.96611 0.82262 0.96211 0.88883 1.22183 0.98264 0.99313 1.02411 1.21956 0.97904 1.01867 0.94855 1.21523 0.96259 0.99765 0.97803 1.21777 0.98156 1.00637 0.96150 1.20628 0.92127 0.96323 0.88012 1.42737 1.31010 1.62906 1.03708 1.19087 0.99838 1.23455 0.94980 0.89288 1.24693 0.97435 1.00129 0.97133 1.69707 1.22215 1.44474 1.21947 0.86511 0.79106 0.79286 0.83415 1.21079 1.21723 1.20371 1.83922 1.58367 1.04324 1.11460 0.90973 0.91839 0.92254 0.89042 0.88239 0.90127 0.90683 0.88067 0.76779 0.92116 0.91286 0.92477 0.91335 0.89944 0.91647 0.92054 0.92172 0.92026 0.95676 0.95811 0.80739 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.89 37.16 0.37 -0.31 16 2 C -0.05 -0.29 6.51 -27.88 -0.18 -0.48 16 3 C 0.07 0.61 6.64 -13.29 -0.09 0.52 16 4 N -0.48 -5.14 10.50 -7.70 -0.08 -5.22 16 5 C 0.15 1.70 6.79 -83.89 -0.57 1.13 16 6 C -0.09 -0.89 9.69 36.01 0.35 -0.54 16 7 C -0.30 -3.27 6.48 -37.10 -0.24 -3.51 16 8 C 0.60 6.93 7.74 -12.85 -0.10 6.83 16 9 O -0.52 -7.23 13.93 5.20 0.07 -7.16 16 10 N -0.72 -6.81 4.53 -55.12 -0.25 -7.06 16 11 C 0.14 1.31 2.57 -67.93 -0.17 1.13 16 12 H 0.09 1.00 7.57 -51.93 -0.39 0.61 16 13 C -0.16 -1.33 9.48 37.16 0.35 -0.98 16 14 C -0.13 -1.14 4.75 -26.73 -0.13 -1.27 16 15 C -0.12 -1.33 5.10 -26.73 -0.14 -1.46 16 16 C -0.13 -1.88 5.33 -26.73 -0.14 -2.03 16 17 C 0.16 3.06 6.26 -4.04 -0.03 3.03 16 18 N -0.76 -18.50 5.41 -59.91 -0.32 -18.83 16 19 C -0.24 -7.08 10.47 -15.06 -0.16 -7.24 16 20 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 21 C 0.00 0.05 5.50 -17.43 -0.10 -0.05 16 22 N -0.94 -29.80 13.97 55.49 0.78 -29.03 16 23 Si 0.89 22.31 27.73 -169.99 -4.71 17.60 16 24 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 27 S 0.16 1.32 22.31 -107.50 -2.40 -1.08 16 28 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.10 1.12 6.02 -51.93 -0.31 0.80 16 36 H 0.40 3.20 7.79 -40.82 -0.32 2.88 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.71 7.75 -51.93 -0.40 0.30 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.36 8.48 5.53 -40.82 -0.23 8.26 16 49 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 411.78 15.07 6.21 6.21 Total: -1.00 -34.64 411.78 -10.11 -44.75 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -8.43 Total: 5.03 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -0.97 Total: -5.21 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: 0.12 Total: -60.14 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: 0.07 Total: -7.16 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.71 Total: 17.60 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.40 Total: -1.08 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.64 -10.11 -44.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175680973.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.752 kcal (2) G-P(sol) polarization free energy of solvation -34.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds