Wall clock time and date at job start Tue Mar 31 2020 23:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47359 * 2 1 4 4 N 1.29431 * 124.79986 * 90.01707 * 3 2 1 5 5 C 1.30944 * 117.36018 * 179.97438 * 4 3 2 6 6 C 1.50701 * 122.90454 * 180.02562 * 5 4 3 7 7 C 1.35668 * 114.19279 * 0.02562 * 5 4 3 8 8 C 1.46677 * 126.13002 * 179.97438 * 7 5 4 9 9 O 1.21682 * 120.00109 * 359.72831 * 8 7 5 10 10 N 1.34784 * 119.99881 * 179.97438 * 8 7 5 11 11 C 1.46499 * 119.99893 * 179.72848 * 10 8 7 12 12 H 1.08990 * 109.47400 * 34.99963 * 11 10 8 13 13 C 1.52998 * 109.46843 * 274.99901 * 11 10 8 14 14 C 1.52997 * 109.46833 * 155.00334 * 11 10 8 15 15 C 1.53001 * 109.47001 * 294.99594 * 14 11 10 16 16 C 1.53000 * 109.47252 * 180.02562 * 15 14 11 17 17 C 1.53001 * 109.47252 * 180.02562 * 16 15 14 18 18 N 1.46498 * 109.47181 * 179.97438 * 17 16 15 19 19 C 1.36938 * 120.00300 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99460 * 359.97438 * 19 18 17 21 21 C 1.38812 * 120.00390 * 180.02562 * 19 18 17 22 22 N 1.31616 * 120.00022 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99862 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.47272 * 90.00421 * 23 21 19 25 25 H 1.48504 * 109.46942 * 210.00608 * 23 21 19 26 26 H 1.48502 * 109.47242 * 330.00332 * 23 21 19 27 27 S 1.70949 * 124.80630 * 270.29854 * 3 2 1 28 28 H 1.08996 * 109.47643 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47541 * 300.00338 * 1 2 3 30 30 H 1.09006 * 109.47214 * 60.00079 * 1 2 3 31 31 H 1.08996 * 109.47541 * 239.99662 * 2 1 3 32 32 H 1.09001 * 109.46778 * 119.99758 * 2 1 3 33 33 H 1.09001 * 109.47482 * 269.96312 * 6 5 4 34 34 H 1.09000 * 109.47018 * 29.96727 * 6 5 4 35 35 H 1.09000 * 109.46954 * 149.95990 * 6 5 4 36 36 H 0.97005 * 119.99846 * 359.72636 * 10 8 7 37 37 H 1.08997 * 109.47450 * 60.00399 * 13 11 10 38 38 H 1.08998 * 109.47317 * 180.02562 * 13 11 10 39 39 H 1.09007 * 109.47248 * 300.00110 * 13 11 10 40 40 H 1.08991 * 109.47642 * 54.99647 * 14 11 10 41 41 H 1.09005 * 109.47281 * 174.99715 * 14 11 10 42 42 H 1.09003 * 109.47143 * 300.00112 * 15 14 11 43 43 H 1.08991 * 109.47075 * 60.00135 * 15 14 11 44 44 H 1.09003 * 109.46744 * 299.99874 * 16 15 14 45 45 H 1.09000 * 109.47138 * 59.99996 * 16 15 14 46 46 H 1.09003 * 109.47143 * 299.99630 * 17 16 15 47 47 H 1.09000 * 109.47052 * 59.99943 * 17 16 15 48 48 H 0.97004 * 120.00001 * 0.02562 * 18 17 16 49 49 H 0.97001 * 119.99726 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2789 2.1171 1.0628 5 6 2.7122 3.3411 0.8933 6 6 3.0384 4.2606 2.0419 7 6 2.8422 3.7099 -0.4058 8 6 3.3033 5.0145 -0.8925 9 8 3.6067 5.8869 -0.1002 10 7 3.3861 5.2488 -2.2172 11 6 3.8410 6.5538 -2.7033 12 1 4.6016 6.9476 -2.0292 13 6 2.6559 7.5200 -2.7552 14 6 4.4335 6.3975 -4.1052 15 6 5.6925 5.5311 -4.0332 16 6 6.2853 5.3754 -5.4350 17 6 7.5440 4.5085 -5.3631 18 7 8.1113 4.3589 -6.7054 19 6 9.2492 3.6195 -6.8894 20 1 9.7285 3.1471 -6.0448 21 6 9.7870 3.4782 -8.1613 22 7 10.8804 2.7671 -8.3381 23 14 8.9582 4.2960 -9.6220 24 1 9.5158 5.6596 -9.8080 25 1 9.2029 3.4900 -10.8451 26 1 7.4969 4.3883 -9.3743 27 16 2.3508 2.3432 -1.4036 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.1485 4.8258 2.3189 34 1 3.3747 3.6712 2.8949 35 1 3.8280 4.9498 1.7426 36 1 3.1446 4.5532 -2.8488 37 1 2.2337 7.6313 -1.7565 38 1 2.9941 8.4908 -3.1173 39 1 1.8952 7.1261 -3.4294 40 1 3.7018 5.9215 -4.7579 41 1 4.6904 7.3795 -4.5026 42 1 6.4243 6.0072 -3.3804 43 1 5.4356 4.5493 -3.6358 44 1 5.5537 4.8995 -6.0880 45 1 6.5423 6.3575 -5.8320 46 1 8.2758 4.9839 -4.7099 47 1 7.2866 3.5265 -4.9663 48 1 7.6813 4.7842 -7.4639 49 1 11.2564 2.6687 -9.2269 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175680973.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:39 Heat of formation + Delta-G solvation = -33.613110 kcal Electronic energy + Delta-G solvation = -26375.983783 eV Core-core repulsion = 22656.202389 eV Total energy + Delta-G solvation = -3719.781394 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.55032 -40.45714 -38.11747 -36.98016 -35.26760 -34.83494 -33.34077 -32.23663 -31.71752 -29.23129 -29.00851 -26.48362 -25.82058 -23.99654 -23.10947 -22.85586 -22.16157 -21.70753 -20.61963 -19.62396 -19.06112 -17.95502 -17.29440 -16.71838 -16.62701 -16.34861 -15.91168 -15.74899 -15.65139 -15.33302 -14.89225 -14.82198 -14.68374 -14.47462 -14.33790 -14.17961 -13.94881 -13.57225 -13.56098 -13.10448 -12.97143 -12.94819 -12.93709 -12.59891 -12.50118 -12.41735 -12.28121 -12.10542 -12.08687 -11.89670 -11.79279 -11.53307 -11.46603 -11.19061 -10.98228 -10.77272 -10.63853 -10.19659 -9.78144 -9.32235 -8.04652 -5.39150 -0.87105 0.09031 0.46227 1.30483 1.37257 1.42322 1.49855 2.00645 2.03844 2.47916 2.90788 3.26309 3.45757 3.69356 3.75274 3.88757 3.97427 4.03664 4.06396 4.19625 4.25941 4.31781 4.36782 4.53032 4.55671 4.62024 4.64786 4.71023 4.76920 4.82788 4.85801 4.89264 4.95835 4.97409 4.99442 5.03355 5.07018 5.23232 5.23509 5.30219 5.31766 5.39568 5.48094 5.52250 5.72976 6.19587 6.31967 6.54609 7.02240 7.06225 7.82095 8.02906 9.17024 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011398 B = 0.002246 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.945964 B =12463.747128 C =13870.045573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.055 4.055 3 C 0.068 3.932 4 N -0.502 5.502 5 C 0.139 3.861 6 C -0.086 4.086 7 C -0.330 4.330 8 C 0.597 3.403 9 O -0.555 6.555 10 N -0.709 5.709 11 C 0.143 3.857 12 H 0.074 0.926 13 C -0.157 4.157 14 C -0.117 4.117 15 C -0.110 4.110 16 C -0.116 4.116 17 C 0.149 3.851 18 N -0.760 5.760 19 C -0.242 4.242 20 H 0.050 0.950 21 C -0.068 4.068 22 N -0.985 5.985 23 Si 0.963 3.037 24 H -0.277 1.277 25 H -0.294 1.294 26 H -0.247 1.247 27 S 0.206 5.794 28 H 0.090 0.910 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.406 0.594 37 H 0.043 0.957 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.015 0.985 47 H 0.019 0.981 48 H 0.368 0.632 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.806 1.527 16.452 33.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 C -0.207 4.207 4 N -0.217 5.217 5 C 0.000 4.000 6 C -0.145 4.145 7 C -0.454 4.454 8 C 0.384 3.616 9 O -0.435 6.435 10 N -0.360 5.360 11 C 0.039 3.961 12 H 0.093 0.907 13 C -0.215 4.215 14 C -0.155 4.155 15 C -0.148 4.148 16 C -0.153 4.153 17 C 0.023 3.977 18 N -0.406 5.406 19 C -0.373 4.373 20 H 0.069 0.931 21 C -0.260 4.260 22 N -0.636 5.636 23 Si 0.789 3.211 24 H -0.203 1.203 25 H -0.221 1.221 26 H -0.171 1.171 27 S 0.465 5.535 28 H 0.109 0.891 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.130 0.870 32 H 0.120 0.880 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.242 0.758 37 H 0.062 0.938 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.114 0.886 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.034 0.966 47 H 0.037 0.963 48 H 0.201 0.799 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -28.587 1.565 16.442 33.015 hybrid contribution 0.510 0.349 -0.270 0.674 sum -28.076 1.913 16.172 32.457 Atomic orbital electron populations 1.21778 0.92139 1.04060 1.02296 1.20570 0.97664 0.85255 1.06092 1.28085 0.98816 1.02822 0.90943 1.66142 1.17280 1.05967 1.32343 1.20901 0.93977 0.90876 0.94225 1.20612 1.03340 0.96833 0.93691 1.25492 1.20403 1.01540 0.98002 1.16802 0.76965 0.84908 0.82957 1.90762 1.51175 1.45929 1.55669 1.45987 1.67453 1.16976 1.05632 1.21101 0.96743 0.82261 0.95986 0.90745 1.22123 0.97912 0.99721 1.01787 1.21873 0.96725 1.02121 0.94751 1.21452 0.97256 1.00352 0.95725 1.21660 0.95728 0.99762 0.98187 1.20846 0.94128 0.97129 0.85549 1.42742 1.29811 1.62199 1.05856 1.19056 1.01070 1.23194 0.93987 0.93145 1.25636 0.98340 1.01300 1.00679 1.69905 1.24329 1.46580 1.22737 0.85295 0.79554 0.77897 0.78348 1.20276 1.22055 1.17107 1.83648 1.57303 1.02473 1.10119 0.89113 0.93094 0.91986 0.87050 0.87958 0.89625 0.89979 0.89525 0.75793 0.93826 0.89963 0.91188 0.89576 0.88643 0.92487 0.92173 0.91027 0.91290 0.96645 0.96332 0.79872 0.93229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.89 71.98 0.71 -0.34 16 2 C -0.06 -0.51 6.51 29.85 0.19 -0.32 16 3 C 0.07 1.10 6.64 88.46 0.59 1.68 16 4 N -0.50 -10.68 10.50 -178.28 -1.87 -12.55 16 5 C 0.14 3.14 6.79 42.10 0.29 3.42 16 6 C -0.09 -1.77 9.69 71.24 0.69 -1.08 16 7 C -0.33 -7.04 6.48 23.88 0.15 -6.88 16 8 C 0.60 13.76 7.74 86.45 0.67 14.43 16 9 O -0.55 -15.83 13.93 -4.29 -0.06 -15.89 16 10 N -0.71 -12.60 4.53 -446.52 -2.02 -14.62 16 11 C 0.14 2.39 2.57 44.99 0.12 2.51 16 12 H 0.07 1.56 7.57 -2.39 -0.02 1.54 16 13 C -0.16 -2.25 9.48 71.98 0.68 -1.57 16 14 C -0.12 -1.72 4.75 30.59 0.15 -1.57 16 15 C -0.11 -2.28 5.10 30.59 0.16 -2.12 16 16 C -0.12 -3.04 5.33 30.59 0.16 -2.88 16 17 C 0.15 5.71 6.26 86.38 0.54 6.25 16 18 N -0.76 -36.15 5.41 -343.45 -1.86 -38.00 16 19 C -0.24 -14.24 10.47 84.03 0.88 -13.35 16 20 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16 21 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 22 N -0.99 -64.05 13.97 21.65 0.30 -63.75 16 23 Si 0.96 45.28 27.73 68.60 1.90 47.18 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 25 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 26 H -0.25 -10.26 6.52 99.48 0.65 -9.61 16 27 S 0.21 3.06 22.31 -56.49 -1.26 1.79 16 28 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.09 2.04 6.02 -2.39 -0.01 2.03 16 36 H 0.41 5.71 7.79 -92.70 -0.72 4.98 16 37 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 40 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.06 1.27 7.75 -2.39 -0.02 1.25 16 44 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.37 16.25 5.53 -92.71 -0.51 15.74 16 49 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -76.77 411.78 1.23 -75.53 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: -0.35 Total: 25.74 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 6.44 Total: -5.44 kcal Atomic # 7 Polarization: -123.48 SS G_CDS: -5.45 Total: -128.92 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.06 Total: -15.89 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.90 Total: 47.18 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -1.26 Total: 1.79 kcal Total: -76.77 1.23 -75.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175680973.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.921 kcal (2) G-P(sol) polarization free energy of solvation -76.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds