Wall clock time and date at job start Tue Mar 31 2020 23:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50710 * 109.46650 * 2 1 4 4 N 1.29421 * 124.80377 * 90.02824 * 3 2 1 5 5 C 1.30942 * 117.36254 * 180.02562 * 4 3 2 6 6 C 1.50703 * 122.90550 * 180.02562 * 5 4 3 7 7 C 1.35671 * 114.19126 * 359.97438 * 5 4 3 8 8 C 1.46679 * 126.12718 * 180.02562 * 7 5 4 9 9 O 1.21684 * 120.00419 * 0.02562 * 8 7 5 10 10 N 1.34781 * 119.99694 * 180.02562 * 8 7 5 11 11 C 1.46501 * 120.00231 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.46643 * 324.99984 * 11 10 8 13 13 C 1.53002 * 109.47013 * 84.99743 * 11 10 8 14 14 C 1.52996 * 109.47049 * 204.99988 * 11 10 8 15 15 C 1.52997 * 109.47131 * 65.00110 * 14 11 10 16 16 C 1.53006 * 109.47127 * 179.97438 * 15 14 11 17 17 C 1.52997 * 109.47127 * 180.02562 * 16 15 14 18 18 N 1.46496 * 109.47294 * 179.97438 * 17 16 15 19 19 C 1.36935 * 120.00627 * 179.97438 * 18 17 16 20 20 H 1.08012 * 119.99691 * 359.97438 * 19 18 17 21 21 C 1.38805 * 120.00809 * 180.02562 * 19 18 17 22 22 N 1.31618 * 120.00579 * 180.02562 * 21 19 18 23 23 Si 1.86811 * 119.99633 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46906 * 90.00102 * 23 21 19 25 25 H 1.48495 * 109.47152 * 210.00270 * 23 21 19 26 26 H 1.48502 * 109.47012 * 330.00516 * 23 21 19 27 27 S 1.70955 * 124.80128 * 270.33942 * 3 2 1 28 28 H 1.09007 * 109.46858 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47590 * 299.99668 * 1 2 3 30 30 H 1.09003 * 109.47504 * 60.00561 * 1 2 3 31 31 H 1.08994 * 109.47311 * 240.00466 * 2 1 3 32 32 H 1.08993 * 109.47483 * 119.99613 * 2 1 3 33 33 H 1.09003 * 109.46830 * 269.95767 * 6 5 4 34 34 H 1.08995 * 109.46686 * 29.95600 * 6 5 4 35 35 H 1.09004 * 109.47029 * 149.95730 * 6 5 4 36 36 H 0.97003 * 120.00102 * 359.97438 * 10 8 7 37 37 H 1.08998 * 109.46646 * 179.97438 * 13 11 10 38 38 H 1.08992 * 109.47133 * 300.00613 * 13 11 10 39 39 H 1.09001 * 109.46843 * 60.00279 * 13 11 10 40 40 H 1.08996 * 109.47452 * 305.00111 * 14 11 10 41 41 H 1.09001 * 109.46997 * 184.99684 * 14 11 10 42 42 H 1.09001 * 109.47502 * 60.00153 * 15 14 11 43 43 H 1.09001 * 109.47289 * 299.99950 * 15 14 11 44 44 H 1.09001 * 109.47002 * 299.99574 * 16 15 14 45 45 H 1.08993 * 109.46955 * 60.00011 * 16 15 14 46 46 H 1.09001 * 109.47289 * 299.99953 * 17 16 15 47 47 H 1.09004 * 109.47261 * 59.99697 * 17 16 15 48 48 H 0.97006 * 119.99755 * 359.97438 * 18 17 16 49 49 H 0.97000 * 120.00140 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4210 0.0000 4 7 2.2789 2.1172 1.0627 5 6 2.7110 3.3416 0.8931 6 6 3.0372 4.2612 2.0417 7 6 2.8408 3.7105 -0.4060 8 6 3.3017 5.0151 -0.8927 9 8 3.6103 5.8857 -0.1005 10 7 3.3835 5.2497 -2.2174 11 6 3.8444 6.5526 -2.7036 12 1 3.4970 7.3355 -2.0295 13 6 5.3734 6.5657 -2.7556 14 6 3.2842 6.8010 -4.1055 15 6 1.7600 6.9120 -4.0334 16 6 1.1999 7.1611 -5.4353 17 6 -0.3243 7.2727 -5.3631 18 7 -0.8606 7.5118 -6.7053 19 6 -2.2108 7.6464 -6.8893 20 1 -2.8806 7.5758 -6.0448 21 6 -2.7190 7.8724 -8.1610 22 7 -4.0168 8.0022 -8.3377 23 14 -1.5607 7.9937 -9.6217 24 1 -1.3635 6.6447 -10.2103 25 1 -2.1455 8.8989 -10.6433 26 1 -0.2524 8.5338 -9.1724 27 16 2.3495 2.3436 -1.4037 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5137 0.8899 33 1 2.1469 4.8256 2.3193 34 1 3.3743 3.6719 2.8943 35 1 3.8261 4.9511 1.7420 36 1 3.1378 4.5556 -2.8490 37 1 5.7163 7.5349 -3.1177 38 1 5.7724 6.3886 -1.7569 39 1 5.7208 5.7827 -3.4297 40 1 3.5576 5.9720 -4.7582 41 1 3.6976 7.7280 -4.5029 42 1 1.4865 7.7410 -3.3808 43 1 1.3465 5.9850 -3.6360 44 1 1.6133 8.0882 -5.8323 45 1 1.4733 6.3323 -6.0883 46 1 -0.7381 6.3458 -4.9660 47 1 -0.5974 8.1017 -4.7101 48 1 -0.2591 7.5748 -7.4638 49 1 -4.3719 8.1598 -9.2265 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175680974.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:43 Heat of formation + Delta-G solvation = -11.029091 kcal Electronic energy + Delta-G solvation = -26419.802094 eV Core-core repulsion = 22701.000016 eV Total energy + Delta-G solvation = -3718.802077 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.76868 -39.66537 -37.10983 -35.48036 -34.70316 -33.38408 -31.88258 -31.18816 -30.65888 -28.38637 -27.80014 -25.89991 -24.34670 -22.89926 -22.31655 -21.62433 -20.97062 -20.82421 -19.84481 -18.33852 -17.52841 -17.16679 -16.52692 -15.85990 -15.42737 -15.12059 -14.85510 -14.73973 -14.50198 -14.20034 -14.13939 -13.83725 -13.60957 -13.43537 -13.24356 -13.09540 -12.84098 -12.72934 -12.45321 -12.34470 -12.13404 -11.95097 -11.70974 -11.69037 -11.66165 -11.48010 -11.21036 -10.89234 -10.87315 -10.44250 -10.39127 -10.33951 -10.10943 -10.00467 -9.89011 -9.58618 -9.40263 -9.07188 -8.88636 -7.21942 -5.76140 -3.11453 -0.13472 0.77786 1.18436 2.08071 2.78676 2.86425 3.37043 3.39643 3.44755 3.53335 4.34065 4.36215 4.54063 4.59458 4.61798 4.68806 4.74461 4.81527 4.87114 5.05622 5.15208 5.26996 5.30408 5.33280 5.40527 5.41282 5.45889 5.47756 5.52722 5.54728 5.59176 5.63062 5.72335 5.77037 5.83643 5.98085 6.01095 6.05263 6.11666 6.16358 6.26342 6.34276 6.77036 6.80750 7.08677 7.27775 7.83530 8.00815 8.43168 9.22606 9.95040 10.15355 11.42456 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010731 B = 0.002344 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.721470 B =11943.372464 C =13679.319079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.051 4.051 3 C 0.071 3.929 4 N -0.478 5.478 5 C 0.153 3.847 6 C -0.090 4.090 7 C -0.305 4.305 8 C 0.601 3.399 9 O -0.523 6.523 10 N -0.717 5.717 11 C 0.142 3.858 12 H 0.093 0.907 13 C -0.163 4.163 14 C -0.128 4.128 15 C -0.115 4.115 16 C -0.129 4.129 17 C 0.156 3.844 18 N -0.758 5.758 19 C -0.244 4.244 20 H 0.089 0.911 21 C 0.002 3.998 22 N -0.935 5.935 23 Si 0.886 3.114 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 S 0.161 5.839 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.398 0.602 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.024 0.976 47 H 0.025 0.975 48 H 0.360 0.640 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.182 -15.180 18.022 31.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.092 4.092 3 C -0.205 4.205 4 N -0.193 5.193 5 C 0.015 3.985 6 C -0.149 4.149 7 C -0.429 4.429 8 C 0.386 3.614 9 O -0.402 6.402 10 N -0.369 5.369 11 C 0.038 3.962 12 H 0.111 0.889 13 C -0.222 4.222 14 C -0.166 4.166 15 C -0.153 4.153 16 C -0.167 4.167 17 C 0.029 3.971 18 N -0.404 5.404 19 C -0.374 4.374 20 H 0.107 0.893 21 C -0.194 4.194 22 N -0.584 5.584 23 Si 0.716 3.284 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.203 1.203 27 S 0.419 5.581 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.119 0.881 36 H 0.232 0.768 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.042 0.958 47 H 0.043 0.957 48 H 0.193 0.807 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 19.990 -14.983 18.007 30.795 hybrid contribution 0.669 0.232 -0.852 1.107 sum 20.659 -14.751 17.155 30.638 Atomic orbital electron populations 1.21802 0.92842 1.03052 1.03100 1.20351 0.97213 0.86957 1.04714 1.27471 1.00167 1.01811 0.91032 1.66090 1.15992 1.05943 1.31237 1.20699 0.93714 0.90397 0.93705 1.20679 1.03744 0.96990 0.93483 1.25448 1.19312 1.00826 0.97296 1.16632 0.77242 0.84892 0.82586 1.90783 1.49817 1.44732 1.54843 1.46016 1.67915 1.16803 1.06122 1.21106 0.94056 0.84819 0.96213 0.88885 1.22184 0.95153 1.02428 1.02411 1.21954 0.96676 1.03090 0.94856 1.21525 0.93814 1.02210 0.97800 1.21777 0.97143 1.01652 0.96150 1.20625 0.90399 0.98046 0.88011 1.42737 1.05098 1.88743 1.03780 1.19087 0.81947 1.41354 0.94981 0.89292 1.24689 0.95562 1.01966 0.97135 1.69706 1.10433 1.56296 1.21929 0.86516 0.80598 0.77688 0.83551 1.21093 1.21711 1.20349 1.83924 1.58438 1.04262 1.11456 0.90955 0.91748 0.92003 0.89193 0.88347 0.89946 0.90765 0.88145 0.76781 0.91286 0.92117 0.92469 0.91327 0.89948 0.91659 0.92052 0.92038 0.92154 0.95764 0.95737 0.80738 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.89 37.16 0.37 -0.45 16 2 C -0.05 -0.29 6.51 -27.88 -0.18 -0.47 16 3 C 0.07 0.61 6.64 -13.29 -0.09 0.52 16 4 N -0.48 -5.14 10.50 -7.70 -0.08 -5.22 16 5 C 0.15 1.70 6.79 -83.89 -0.57 1.13 16 6 C -0.09 -0.89 9.70 36.01 0.35 -0.54 16 7 C -0.31 -3.27 6.48 -37.09 -0.24 -3.51 16 8 C 0.60 6.92 7.74 -12.85 -0.10 6.82 16 9 O -0.52 -7.24 13.93 5.20 0.07 -7.16 16 10 N -0.72 -6.80 4.53 -55.12 -0.25 -7.05 16 11 C 0.14 1.30 2.57 -67.93 -0.17 1.13 16 12 H 0.09 1.00 7.58 -51.93 -0.39 0.61 16 13 C -0.16 -1.33 9.48 37.16 0.35 -0.98 16 14 C -0.13 -1.14 4.75 -26.73 -0.13 -1.27 16 15 C -0.12 -1.33 5.10 -26.73 -0.14 -1.46 16 16 C -0.13 -1.88 5.33 -26.73 -0.14 -2.03 16 17 C 0.16 3.06 6.26 -4.05 -0.03 3.03 16 18 N -0.76 -18.49 5.41 -59.91 -0.32 -18.82 16 19 C -0.24 -7.08 10.47 -15.06 -0.16 -7.24 16 20 H 0.09 2.77 8.06 -52.48 -0.42 2.34 16 21 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 22 N -0.94 -29.80 13.97 55.49 0.78 -29.03 16 23 Si 0.89 22.30 27.74 -169.99 -4.71 17.58 16 24 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 26 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 27 S 0.16 1.32 22.31 -107.50 -2.40 -1.08 16 28 H 0.07 0.28 8.14 -51.92 -0.42 -0.14 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 1.07 6.01 -51.93 -0.31 0.76 16 36 H 0.40 3.19 7.79 -40.82 -0.32 2.88 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.71 7.75 -51.93 -0.40 0.30 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.36 8.48 5.53 -40.82 -0.23 8.25 16 49 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 411.77 15.07 6.21 6.21 Total: -1.00 -34.62 411.77 -10.11 -44.74 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -8.43 Total: 5.18 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -0.97 Total: -5.33 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: 0.12 Total: -60.12 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: 0.07 Total: -7.16 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.71 Total: 17.58 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.40 Total: -1.08 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.62 -10.11 -44.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175680974.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.707 kcal (2) G-P(sol) polarization free energy of solvation -34.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds