Wall clock time and date at job start Tue Mar 31 2020 23:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50710 * 109.46650 * 2 1 4 4 N 1.29421 * 124.80377 * 90.02824 * 3 2 1 5 5 C 1.30942 * 117.36254 * 180.02562 * 4 3 2 6 6 C 1.50703 * 122.90550 * 180.02562 * 5 4 3 7 7 C 1.35671 * 114.19126 * 359.97438 * 5 4 3 8 8 C 1.46679 * 126.12718 * 180.02562 * 7 5 4 9 9 O 1.21684 * 120.00419 * 0.02562 * 8 7 5 10 10 N 1.34781 * 119.99694 * 180.02562 * 8 7 5 11 11 C 1.46501 * 120.00231 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.46643 * 324.99984 * 11 10 8 13 13 C 1.53002 * 109.47013 * 84.99743 * 11 10 8 14 14 C 1.52996 * 109.47049 * 204.99988 * 11 10 8 15 15 C 1.52997 * 109.47131 * 65.00110 * 14 11 10 16 16 C 1.53006 * 109.47127 * 179.97438 * 15 14 11 17 17 C 1.52997 * 109.47127 * 180.02562 * 16 15 14 18 18 N 1.46496 * 109.47294 * 179.97438 * 17 16 15 19 19 C 1.36935 * 120.00627 * 179.97438 * 18 17 16 20 20 H 1.08012 * 119.99691 * 359.97438 * 19 18 17 21 21 C 1.38805 * 120.00809 * 180.02562 * 19 18 17 22 22 N 1.31618 * 120.00579 * 180.02562 * 21 19 18 23 23 Si 1.86811 * 119.99633 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46906 * 90.00102 * 23 21 19 25 25 H 1.48495 * 109.47152 * 210.00270 * 23 21 19 26 26 H 1.48502 * 109.47012 * 330.00516 * 23 21 19 27 27 S 1.70955 * 124.80128 * 270.33942 * 3 2 1 28 28 H 1.09007 * 109.46858 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47590 * 299.99668 * 1 2 3 30 30 H 1.09003 * 109.47504 * 60.00561 * 1 2 3 31 31 H 1.08994 * 109.47311 * 240.00466 * 2 1 3 32 32 H 1.08993 * 109.47483 * 119.99613 * 2 1 3 33 33 H 1.09003 * 109.46830 * 269.95767 * 6 5 4 34 34 H 1.08995 * 109.46686 * 29.95600 * 6 5 4 35 35 H 1.09004 * 109.47029 * 149.95730 * 6 5 4 36 36 H 0.97003 * 120.00102 * 359.97438 * 10 8 7 37 37 H 1.08998 * 109.46646 * 179.97438 * 13 11 10 38 38 H 1.08992 * 109.47133 * 300.00613 * 13 11 10 39 39 H 1.09001 * 109.46843 * 60.00279 * 13 11 10 40 40 H 1.08996 * 109.47452 * 305.00111 * 14 11 10 41 41 H 1.09001 * 109.46997 * 184.99684 * 14 11 10 42 42 H 1.09001 * 109.47502 * 60.00153 * 15 14 11 43 43 H 1.09001 * 109.47289 * 299.99950 * 15 14 11 44 44 H 1.09001 * 109.47002 * 299.99574 * 16 15 14 45 45 H 1.08993 * 109.46955 * 60.00011 * 16 15 14 46 46 H 1.09001 * 109.47289 * 299.99953 * 17 16 15 47 47 H 1.09004 * 109.47261 * 59.99697 * 17 16 15 48 48 H 0.97006 * 119.99755 * 359.97438 * 18 17 16 49 49 H 0.97000 * 120.00140 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4210 0.0000 4 7 2.2789 2.1172 1.0627 5 6 2.7110 3.3416 0.8931 6 6 3.0372 4.2612 2.0417 7 6 2.8408 3.7105 -0.4060 8 6 3.3017 5.0151 -0.8927 9 8 3.6103 5.8857 -0.1005 10 7 3.3835 5.2497 -2.2174 11 6 3.8444 6.5526 -2.7036 12 1 3.4970 7.3355 -2.0295 13 6 5.3734 6.5657 -2.7556 14 6 3.2842 6.8010 -4.1055 15 6 1.7600 6.9120 -4.0334 16 6 1.1999 7.1611 -5.4353 17 6 -0.3243 7.2727 -5.3631 18 7 -0.8606 7.5118 -6.7053 19 6 -2.2108 7.6464 -6.8893 20 1 -2.8806 7.5758 -6.0448 21 6 -2.7190 7.8724 -8.1610 22 7 -4.0168 8.0022 -8.3377 23 14 -1.5607 7.9937 -9.6217 24 1 -1.3635 6.6447 -10.2103 25 1 -2.1455 8.8989 -10.6433 26 1 -0.2524 8.5338 -9.1724 27 16 2.3495 2.3436 -1.4037 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5137 0.8899 33 1 2.1469 4.8256 2.3193 34 1 3.3743 3.6719 2.8943 35 1 3.8261 4.9511 1.7420 36 1 3.1378 4.5556 -2.8490 37 1 5.7163 7.5349 -3.1177 38 1 5.7724 6.3886 -1.7569 39 1 5.7208 5.7827 -3.4297 40 1 3.5576 5.9720 -4.7582 41 1 3.6976 7.7280 -4.5029 42 1 1.4865 7.7410 -3.3808 43 1 1.3465 5.9850 -3.6360 44 1 1.6133 8.0882 -5.8323 45 1 1.4733 6.3323 -6.0883 46 1 -0.7381 6.3458 -4.9660 47 1 -0.5974 8.1017 -4.7101 48 1 -0.2591 7.5748 -7.4638 49 1 -4.3719 8.1598 -9.2265 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175680974.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:42 Heat of formation + Delta-G solvation = -33.631724 kcal Electronic energy + Delta-G solvation = -26420.782217 eV Core-core repulsion = 22701.000016 eV Total energy + Delta-G solvation = -3719.782201 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.55032 -40.45726 -38.11851 -36.98122 -35.26782 -34.83614 -33.34188 -32.23767 -31.71935 -29.23239 -29.00772 -26.48888 -25.82170 -23.99733 -23.11027 -22.85556 -22.16340 -21.70875 -20.61909 -19.62465 -19.05981 -17.95508 -17.31398 -16.68643 -16.61687 -16.30364 -16.01949 -15.85299 -15.48711 -15.32438 -14.91601 -14.83654 -14.69086 -14.47948 -14.29598 -14.19338 -13.97767 -13.60531 -13.53278 -13.07853 -12.97641 -12.96067 -12.93263 -12.60660 -12.47701 -12.41553 -12.32683 -12.10996 -12.06388 -11.89935 -11.80662 -11.52976 -11.47074 -11.18395 -10.98175 -10.76834 -10.64115 -10.19667 -9.78371 -9.32357 -8.04740 -5.39300 -0.87095 0.09147 0.46333 1.30472 1.37344 1.42225 1.49895 2.00935 2.03484 2.47850 2.91011 3.26232 3.45654 3.69347 3.75343 3.88744 3.97553 4.03552 4.06182 4.19610 4.25448 4.31803 4.36619 4.52773 4.55440 4.61959 4.64655 4.70937 4.77075 4.82648 4.85693 4.89127 4.95674 4.96162 4.99294 5.02864 5.06938 5.23095 5.23551 5.30299 5.31684 5.39409 5.47900 5.52155 5.72796 6.19495 6.31991 6.54687 7.02242 7.06170 7.81992 8.02813 9.16977 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010731 B = 0.002344 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.721470 B =11943.372464 C =13679.319079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.052 4.052 3 C 0.068 3.932 4 N -0.502 5.502 5 C 0.139 3.861 6 C -0.086 4.086 7 C -0.330 4.330 8 C 0.597 3.403 9 O -0.555 6.555 10 N -0.709 5.709 11 C 0.143 3.857 12 H 0.074 0.926 13 C -0.157 4.157 14 C -0.117 4.117 15 C -0.110 4.110 16 C -0.116 4.116 17 C 0.150 3.850 18 N -0.760 5.760 19 C -0.242 4.242 20 H 0.050 0.950 21 C -0.068 4.068 22 N -0.986 5.986 23 Si 0.963 3.037 24 H -0.274 1.274 25 H -0.295 1.295 26 H -0.249 1.249 27 S 0.206 5.794 28 H 0.091 0.909 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.406 0.594 37 H 0.081 0.919 38 H 0.043 0.957 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.020 0.980 47 H 0.014 0.986 48 H 0.368 0.632 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.650 -16.542 16.450 32.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.093 4.093 3 C -0.207 4.207 4 N -0.217 5.217 5 C 0.000 4.000 6 C -0.145 4.145 7 C -0.454 4.454 8 C 0.384 3.616 9 O -0.436 6.436 10 N -0.360 5.360 11 C 0.039 3.961 12 H 0.092 0.908 13 C -0.215 4.215 14 C -0.155 4.155 15 C -0.148 4.148 16 C -0.153 4.153 17 C 0.024 3.976 18 N -0.406 5.406 19 C -0.373 4.373 20 H 0.068 0.932 21 C -0.259 4.259 22 N -0.636 5.636 23 Si 0.789 3.211 24 H -0.200 1.200 25 H -0.222 1.222 26 H -0.173 1.173 27 S 0.464 5.536 28 H 0.110 0.890 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.133 0.867 32 H 0.124 0.876 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.242 0.758 37 H 0.100 0.900 38 H 0.062 0.938 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.038 0.962 47 H 0.032 0.968 48 H 0.201 0.799 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 22.499 -16.366 16.441 32.317 hybrid contribution -0.203 0.599 -0.272 0.688 sum 22.296 -15.767 16.169 31.735 Atomic orbital electron populations 1.21801 0.92706 1.04038 1.02105 1.20556 0.97156 0.85270 1.06295 1.28095 0.98827 1.02841 0.90931 1.66135 1.17201 1.06024 1.32351 1.20902 0.93983 0.90887 0.94221 1.20616 1.03269 0.96849 0.93759 1.25493 1.20326 1.01602 0.98007 1.16802 0.76938 0.84935 0.82958 1.90761 1.51307 1.45808 1.55675 1.45984 1.67236 1.17180 1.05632 1.21103 0.94922 0.84092 0.95978 0.90772 1.22124 0.93944 1.03674 1.01807 1.21871 0.94313 1.04521 0.94762 1.21453 0.95771 1.01841 0.95720 1.21659 0.92953 1.02523 0.98203 1.20843 0.94077 0.97174 0.85544 1.42742 1.03338 1.88602 1.05925 1.19057 0.83809 1.40478 0.93989 0.93152 1.25628 0.97455 1.02127 1.00668 1.69904 1.12981 1.57973 1.22727 0.85299 0.79122 0.78020 0.78675 1.19973 1.22159 1.17300 1.83652 1.57356 1.02411 1.10131 0.89007 0.93306 0.92417 0.86714 0.87647 0.90136 0.89746 0.89249 0.75784 0.89977 0.93802 0.91166 0.89529 0.88675 0.92543 0.92146 0.91422 0.90886 0.96237 0.96763 0.79871 0.93219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.89 71.98 0.71 -0.67 16 2 C -0.05 -0.48 6.51 29.85 0.19 -0.28 16 3 C 0.07 1.09 6.64 88.47 0.59 1.68 16 4 N -0.50 -10.65 10.50 -178.27 -1.87 -12.52 16 5 C 0.14 3.13 6.79 42.10 0.29 3.42 16 6 C -0.09 -1.78 9.70 71.24 0.69 -1.09 16 7 C -0.33 -7.03 6.48 23.88 0.15 -6.87 16 8 C 0.60 13.75 7.74 86.45 0.67 14.42 16 9 O -0.55 -15.83 13.93 -4.30 -0.06 -15.89 16 10 N -0.71 -12.58 4.53 -446.51 -2.02 -14.61 16 11 C 0.14 2.39 2.57 44.99 0.12 2.51 16 12 H 0.07 1.56 7.58 -2.39 -0.02 1.54 16 13 C -0.16 -2.25 9.48 71.98 0.68 -1.56 16 14 C -0.12 -1.72 4.75 30.59 0.15 -1.57 16 15 C -0.11 -2.28 5.10 30.60 0.16 -2.13 16 16 C -0.12 -3.04 5.33 30.60 0.16 -2.88 16 17 C 0.15 5.72 6.26 86.38 0.54 6.26 16 18 N -0.76 -36.15 5.41 -343.46 -1.86 -38.01 16 19 C -0.24 -14.25 10.47 84.03 0.88 -13.37 16 20 H 0.05 3.27 8.06 -2.90 -0.02 3.25 16 21 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 22 N -0.99 -64.07 13.97 21.65 0.30 -63.76 16 23 Si 0.96 45.25 27.74 68.60 1.90 47.16 16 24 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 26 H -0.25 -10.41 6.52 99.48 0.65 -9.76 16 27 S 0.21 3.05 22.31 -56.49 -1.26 1.79 16 28 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.09 2.04 6.01 -2.38 -0.01 2.02 16 36 H 0.41 5.69 7.79 -92.71 -0.72 4.96 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.06 1.27 7.75 -2.39 -0.02 1.25 16 44 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 48 H 0.37 16.25 5.53 -92.70 -0.51 15.74 16 49 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -76.79 411.77 1.23 -75.55 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: -0.35 Total: 26.01 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 6.45 Total: -5.72 kcal Atomic # 7 Polarization: -123.45 SS G_CDS: -5.45 Total: -128.90 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.06 Total: -15.89 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.90 Total: 47.16 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -1.26 Total: 1.79 kcal Total: -76.79 1.23 -75.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175680974.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.922 kcal (2) G-P(sol) polarization free energy of solvation -76.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds