Wall clock time and date at job start Tue Mar 31 2020 22:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31787 * 122.74572 * 2 1 4 4 C 1.29027 * 117.12361 * 179.97438 * 3 2 1 5 5 S 1.70979 * 110.16770 * 359.72984 * 4 3 2 6 6 C 1.33637 * 122.75346 * 179.97438 * 2 1 3 7 7 C 1.50699 * 126.03660 * 0.02562 * 6 2 1 8 8 C 1.53006 * 109.46866 * 89.99861 * 7 6 2 9 9 C 1.50699 * 109.46866 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00040 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00033 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00165 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.46886 * 324.99885 * 12 11 9 14 14 C 1.53002 * 109.47146 * 84.99328 * 12 11 9 15 15 C 1.52995 * 109.47363 * 205.00012 * 12 11 9 16 16 C 1.53000 * 109.47400 * 64.99776 * 15 12 11 17 17 C 1.52991 * 109.47174 * 180.02562 * 16 15 12 18 18 C 1.53000 * 109.47174 * 180.02562 * 17 16 15 19 19 N 1.46501 * 109.47380 * 179.97438 * 18 17 16 20 20 C 1.36935 * 119.99918 * 179.97438 * 19 18 17 21 21 H 1.07996 * 120.00111 * 0.02562 * 20 19 18 22 22 C 1.38816 * 119.99855 * 180.02562 * 20 19 18 23 23 N 1.31623 * 120.00215 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00085 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47211 * 89.99912 * 24 22 20 26 26 H 1.48500 * 109.47295 * 210.00106 * 24 22 20 27 27 H 1.48505 * 109.47241 * 330.00156 * 24 22 20 28 28 H 1.08998 * 109.47300 * 269.99969 * 1 2 3 29 29 H 1.09001 * 109.46936 * 30.00344 * 1 2 3 30 30 H 1.09003 * 109.46557 * 149.99500 * 1 2 3 31 31 H 1.08003 * 124.91714 * 180.02562 * 4 3 2 32 32 H 1.09000 * 109.47247 * 330.00030 * 7 6 2 33 33 H 1.09001 * 109.47358 * 209.99456 * 7 6 2 34 34 H 1.08993 * 109.46955 * 300.00219 * 8 7 6 35 35 H 1.09000 * 109.47050 * 60.00048 * 8 7 6 36 36 H 0.96996 * 119.99850 * 359.97438 * 11 9 8 37 37 H 1.09006 * 109.46479 * 60.00161 * 14 12 11 38 38 H 1.09001 * 109.46947 * 180.02562 * 14 12 11 39 39 H 1.08999 * 109.47584 * 300.00425 * 14 12 11 40 40 H 1.08996 * 109.47558 * 185.00111 * 15 12 11 41 41 H 1.09009 * 109.46952 * 304.99942 * 15 12 11 42 42 H 1.09005 * 109.47009 * 300.00439 * 16 15 12 43 43 H 1.08998 * 109.46746 * 59.99722 * 16 15 12 44 44 H 1.09005 * 109.47120 * 299.99891 * 17 16 15 45 45 H 1.08998 * 109.47902 * 59.99951 * 17 16 15 46 46 H 1.09005 * 109.47009 * 299.99960 * 18 17 16 47 47 H 1.08997 * 109.47274 * 59.99795 * 18 17 16 48 48 H 0.97000 * 120.00028 * 0.02562 * 19 18 17 49 49 H 0.96997 * 120.00147 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2198 1.1084 0.0000 4 6 3.5039 0.9820 0.0005 5 16 3.9333 -0.6729 0.0086 6 6 2.2300 -1.1239 0.0005 7 6 1.6848 -2.5288 0.0006 8 6 1.5008 -3.0045 -1.4420 9 6 0.9562 -4.4096 -1.4419 10 8 0.7373 -4.9751 -0.3915 11 7 0.7134 -5.0383 -2.6091 12 6 0.1845 -6.4045 -2.6090 13 1 0.6027 -6.9560 -1.7669 14 6 -1.3398 -6.3613 -2.4838 15 6 0.5694 -7.1005 -3.9160 16 6 2.0901 -7.2552 -3.9828 17 6 2.4750 -7.9506 -5.2901 18 6 3.9956 -8.1059 -5.3567 19 7 4.3642 -8.7724 -6.6082 20 6 5.6811 -9.0203 -6.8898 21 1 6.4480 -8.7248 -6.1891 22 6 6.0304 -9.6513 -8.0759 23 7 5.0957 -10.0118 -8.9296 24 14 7.8268 -9.9901 -8.4598 25 1 8.2033 -11.3247 -7.9286 26 1 8.0317 -9.9669 -9.9304 27 1 8.6736 -8.9480 -7.8256 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3632 -0.8900 -0.5139 31 1 4.2059 1.8028 0.0010 32 1 0.7235 -2.5455 0.5141 33 1 2.3829 -3.1895 0.5147 34 1 0.8028 -2.3439 -1.9561 35 1 2.4622 -2.9878 -1.9554 36 1 0.8888 -4.5862 -3.4491 37 1 -1.7580 -5.8098 -3.3259 38 1 -1.7333 -7.3778 -2.4833 39 1 -1.6140 -5.8655 -1.5526 40 1 0.1020 -8.0844 -3.9551 41 1 0.2276 -6.5022 -4.7606 42 1 2.5575 -6.2712 -3.9438 43 1 2.4318 -7.8535 -3.1382 44 1 2.0076 -8.9346 -5.3295 45 1 2.1332 -7.3521 -6.1345 46 1 4.4634 -7.1221 -5.3170 47 1 4.3370 -8.7048 -4.5124 48 1 3.6754 -9.0374 -7.2376 49 1 5.3397 -10.4530 -9.7582 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175967743.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:45 Heat of formation + Delta-G solvation = -17.464814 kcal Electronic energy + Delta-G solvation = -25865.511062 eV Core-core repulsion = 22146.429910 eV Total energy + Delta-G solvation = -3719.081151 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.45755 -39.98130 -37.13685 -35.32713 -34.69946 -33.28163 -31.88214 -31.12735 -30.25984 -28.04767 -27.46565 -25.44496 -24.35772 -23.78348 -22.16466 -20.96763 -20.71660 -20.60071 -19.24626 -18.53784 -17.39904 -17.01619 -16.50492 -16.18440 -15.51026 -15.31251 -15.02241 -14.71287 -14.37752 -14.04756 -13.96099 -13.78388 -13.43021 -13.26470 -13.07483 -12.98516 -12.93385 -12.89966 -12.76680 -12.47694 -12.33001 -11.94410 -11.78759 -11.47771 -11.28230 -11.24170 -11.00952 -10.81827 -10.72345 -10.43148 -10.32412 -10.14188 -10.01637 -9.99043 -9.67115 -9.61450 -9.26458 -9.09868 -8.86026 -6.90582 -5.75654 -3.04072 0.29547 0.97409 1.36521 2.36855 2.40575 2.94636 3.43898 3.48716 3.50593 3.83416 4.25107 4.49785 4.50260 4.55954 4.63539 4.73066 4.81994 4.84922 4.93995 4.96268 5.11159 5.20450 5.23330 5.29234 5.38799 5.42815 5.43750 5.54073 5.56039 5.59708 5.61172 5.67818 5.76957 5.87612 5.89762 5.93349 6.08229 6.20754 6.29118 6.36232 6.37934 6.45353 6.88743 6.92709 7.26785 7.31982 7.70683 7.99169 8.43734 9.54419 10.13662 10.48189 11.47417 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010561 B = 0.001873 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.698810 B =14945.366201 C =17117.477611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.060 3.940 3 N -0.469 5.469 4 C 0.017 3.983 5 S 0.125 5.875 6 C -0.219 4.219 7 C -0.025 4.025 8 C -0.139 4.139 9 C 0.515 3.485 10 O -0.542 6.542 11 N -0.722 5.722 12 C 0.140 3.860 13 H 0.088 0.912 14 C -0.163 4.163 15 C -0.127 4.127 16 C -0.114 4.114 17 C -0.126 4.126 18 C 0.152 3.848 19 N -0.735 5.735 20 C -0.238 4.238 21 H 0.070 0.930 22 C -0.017 4.017 23 N -0.935 5.935 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.199 0.801 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.401 0.599 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.016 0.984 47 H 0.016 0.984 48 H 0.383 0.617 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.383 20.795 19.167 30.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.072 4.072 3 N -0.182 5.182 4 C -0.281 4.281 5 S 0.379 5.621 6 C -0.340 4.340 7 C -0.065 4.065 8 C -0.179 4.179 9 C 0.301 3.699 10 O -0.419 6.419 11 N -0.374 5.374 12 C 0.036 3.964 13 H 0.107 0.893 14 C -0.221 4.221 15 C -0.165 4.165 16 C -0.152 4.152 17 C -0.164 4.164 18 C 0.025 3.975 19 N -0.379 5.379 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.212 4.212 23 N -0.584 5.584 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.216 0.784 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.236 0.764 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.033 0.967 47 H 0.034 0.966 48 H 0.217 0.783 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.590 20.419 19.944 30.806 hybrid contribution 0.194 0.073 -1.011 1.032 sum -11.396 20.492 18.933 30.137 Atomic orbital electron populations 1.20384 0.87059 1.03382 1.03094 1.20268 0.98290 0.86166 1.02504 1.66196 1.05090 1.31615 1.15348 1.28303 0.95232 1.00179 1.04404 1.84219 1.06920 1.03486 1.67476 1.25750 0.95125 1.00637 1.12451 1.19744 1.02557 0.88209 0.95967 1.21705 1.03536 0.93914 0.98775 1.20543 0.77429 0.88033 0.83851 1.90712 1.52392 1.67585 1.31237 1.46143 1.66305 1.16345 1.08587 1.21051 0.93645 0.82229 0.99503 0.89348 1.22172 0.95403 1.02447 1.02068 1.21942 0.97356 1.01223 0.95990 1.21515 0.94260 1.00885 0.98512 1.21727 0.97695 1.00427 0.96515 1.20648 0.91692 0.95241 0.89938 1.42390 1.05714 1.70727 1.19068 1.19253 0.84356 1.31503 1.01870 0.91233 1.24758 0.97576 1.01687 0.97208 1.69663 1.31177 1.46445 1.11069 0.86174 0.84677 0.78063 0.77200 1.21716 1.21756 1.20773 0.90558 0.90546 0.90619 0.78435 0.88803 0.89548 0.88546 0.88474 0.76432 0.92506 0.91527 0.92308 0.90216 0.91348 0.92169 0.92004 0.92053 0.92133 0.96658 0.96589 0.78350 0.93545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 9.82 36.01 0.35 -0.15 16 2 C 0.06 0.51 6.74 -84.22 -0.57 -0.06 16 3 N -0.47 -4.44 10.53 -11.89 -0.13 -4.56 16 4 C 0.02 0.12 12.23 51.58 0.63 0.75 16 5 S 0.12 0.88 23.22 -107.50 -2.50 -1.62 16 6 C -0.22 -1.72 5.84 -35.92 -0.21 -1.93 16 7 C -0.02 -0.18 4.44 -27.88 -0.12 -0.31 16 8 C -0.14 -0.92 5.68 -27.88 -0.16 -1.08 16 9 C 0.52 4.80 7.79 -10.99 -0.09 4.72 16 10 O -0.54 -7.03 15.64 5.56 0.09 -6.94 16 11 N -0.72 -5.86 4.53 -53.81 -0.24 -6.11 16 12 C 0.14 1.27 2.57 -67.93 -0.17 1.10 16 13 H 0.09 0.98 7.58 -51.93 -0.39 0.58 16 14 C -0.16 -1.34 9.48 37.16 0.35 -0.98 16 15 C -0.13 -1.18 4.75 -26.73 -0.13 -1.31 16 16 C -0.11 -1.35 5.10 -26.74 -0.14 -1.48 16 17 C -0.13 -1.96 5.33 -26.74 -0.14 -2.10 16 18 C 0.15 3.11 6.26 -4.04 -0.03 3.08 16 19 N -0.74 -19.12 5.60 -59.91 -0.34 -19.46 16 20 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 21 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 22 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 23 N -0.93 -28.63 13.06 55.49 0.72 -27.90 16 24 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.39 7.19 -51.93 -0.37 0.01 16 31 H 0.20 0.80 8.06 -52.48 -0.42 0.38 16 32 H 0.09 0.71 7.39 -51.93 -0.38 0.32 16 33 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 34 H 0.10 0.49 7.98 -51.93 -0.41 0.08 16 35 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.40 2.48 8.60 -40.82 -0.35 2.13 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 42 H 0.06 0.69 7.75 -51.93 -0.40 0.28 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.38 10.39 7.67 -40.82 -0.31 10.08 16 49 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 417.29 15.07 6.29 6.29 Total: -1.00 -34.79 417.29 -10.30 -45.10 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -8.52 Total: 4.91 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -0.66 Total: -7.33 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: 0.02 Total: -58.03 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: 0.09 Total: -6.94 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.50 Total: -1.62 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -34.79 -10.30 -45.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175967743.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.632 kcal (2) G-P(sol) polarization free energy of solvation -34.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds