Wall clock time and date at job start Tue Mar 31 2020 23:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.46947 * 2 1 4 4 N 1.29022 * 124.91621 * 90.00471 * 3 2 1 5 5 C 1.31778 * 117.12423 * 179.97438 * 4 3 2 6 6 C 1.50706 * 122.74863 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.46901 * 305.02299 * 6 5 4 8 8 O 1.21274 * 120.00034 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99541 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99693 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.46660 * 35.00912 * 10 9 7 12 12 C 1.52997 * 109.47289 * 275.00198 * 10 9 7 13 13 C 1.52999 * 109.46684 * 155.00124 * 10 9 7 14 14 C 1.53002 * 109.47645 * 294.99878 * 13 10 9 15 15 C 1.52999 * 109.47304 * 179.97438 * 14 13 10 16 16 C 1.52998 * 109.46990 * 179.97438 * 15 14 13 17 17 N 1.46497 * 109.47197 * 180.02562 * 16 15 14 18 18 C 1.36942 * 120.00377 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99325 * 0.02562 * 18 17 16 20 20 C 1.38806 * 119.99959 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00582 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99774 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47226 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47222 * 119.99652 * 22 20 18 25 25 H 1.48502 * 109.47154 * 239.99890 * 22 20 18 26 26 C 1.33633 * 114.50494 * 0.23135 * 5 4 3 27 27 S 1.70972 * 124.91517 * 269.99767 * 3 2 1 28 28 H 1.08998 * 109.47193 * 59.99803 * 1 2 3 29 29 H 1.09000 * 109.47066 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46787 * 299.99486 * 1 2 3 31 31 H 1.09000 * 109.47225 * 239.99890 * 2 1 3 32 32 H 1.09005 * 109.47404 * 119.99869 * 2 1 3 33 33 H 1.09002 * 109.47036 * 185.03073 * 6 5 4 34 34 H 1.08999 * 109.47314 * 65.02094 * 6 5 4 35 35 H 0.97000 * 120.00190 * 0.02562 * 9 7 6 36 36 H 1.09002 * 109.47153 * 179.97438 * 12 10 9 37 37 H 1.09001 * 109.46832 * 60.00146 * 12 10 9 38 38 H 1.09004 * 109.47261 * 300.00128 * 12 10 9 39 39 H 1.09001 * 109.47317 * 55.00694 * 13 10 9 40 40 H 1.09006 * 109.47194 * 175.00331 * 13 10 9 41 41 H 1.08993 * 109.47092 * 300.00720 * 14 13 10 42 42 H 1.09007 * 109.46700 * 60.00493 * 14 13 10 43 43 H 1.09001 * 109.47622 * 300.00794 * 15 14 13 44 44 H 1.09007 * 109.46705 * 60.00661 * 15 14 13 45 45 H 1.09001 * 109.47690 * 300.00879 * 16 15 14 46 46 H 1.09007 * 109.46754 * 60.00817 * 16 15 14 47 47 H 0.97001 * 119.99863 * 0.02562 * 17 16 15 48 48 H 0.96997 * 120.00115 * 180.02562 * 21 20 18 49 49 H 1.07995 * 126.04746 * 179.77166 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2785 2.1171 1.0580 5 6 2.7142 3.3479 0.8793 6 6 3.0403 4.2716 2.0246 7 6 1.8450 4.3835 2.9356 8 8 0.8287 3.7730 2.6803 9 7 1.9060 5.1613 4.0346 10 6 0.7438 5.2706 4.9200 11 1 0.2223 4.3141 4.9546 12 6 -0.2027 6.3488 4.3885 13 6 1.2090 5.6490 6.3276 14 6 2.0545 4.5136 6.9079 15 6 2.5202 4.8923 8.3152 16 6 3.3651 3.7566 8.8957 17 7 3.8105 4.1189 10.2435 18 6 4.5864 3.2511 10.9647 19 1 4.8702 2.2996 10.5397 20 6 5.0079 3.5943 12.2419 21 7 4.6615 4.7535 12.7601 22 14 6.0668 2.4107 13.2255 23 1 6.3142 1.1850 12.4244 24 1 7.3622 3.0593 13.5515 25 1 5.3653 2.0466 14.4827 26 6 2.8380 3.7117 -0.4006 27 16 2.3585 2.3435 -1.4020 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.2939 5.2576 1.6352 34 1 3.8869 3.8727 2.5834 35 1 2.7190 5.6493 4.2390 36 1 -1.0675 6.4298 5.0470 37 1 -0.5340 6.0792 3.3857 38 1 0.3190 7.3053 4.3539 39 1 1.8064 6.5595 6.2803 40 1 0.3404 5.8171 6.9644 41 1 1.4571 3.6032 6.9551 42 1 2.9232 4.3455 6.2711 43 1 3.1177 5.8026 8.2676 44 1 1.6517 5.0607 8.9522 45 1 2.7672 2.8465 8.9434 46 1 4.2336 3.5878 8.2588 47 1 3.5558 4.9736 10.6250 48 1 4.9564 4.9934 13.6525 49 1 3.1739 4.6738 -0.7581 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176746923.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:12 Heat of formation + Delta-G solvation = -12.362756 kcal Electronic energy + Delta-G solvation = -26076.752802 eV Core-core repulsion = 22357.892892 eV Total energy + Delta-G solvation = -3718.859909 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.61014 -39.44168 -36.90726 -35.22243 -34.59247 -33.23645 -32.06709 -31.00484 -30.17995 -28.29420 -27.42128 -25.68006 -24.23112 -22.81077 -22.03059 -21.06376 -20.70420 -20.55235 -19.94630 -18.09800 -17.19272 -16.98573 -16.32050 -15.85571 -15.39426 -15.04530 -14.90787 -14.70476 -14.52886 -14.20586 -13.86334 -13.74022 -13.55668 -13.29804 -13.12809 -13.05076 -12.91215 -12.58949 -12.35775 -12.33388 -11.97808 -11.73960 -11.70809 -11.44807 -11.40509 -11.22865 -10.96910 -10.80418 -10.67560 -10.37908 -10.27445 -9.98299 -9.93650 -9.79484 -9.64628 -9.63141 -9.16045 -8.99586 -8.84096 -6.87817 -5.73507 -3.01717 0.42867 1.07847 1.43289 2.46685 2.56792 3.14529 3.45223 3.50706 3.53198 3.69855 4.38460 4.52416 4.64431 4.67230 4.73332 4.79769 4.86690 4.88335 4.96812 5.02574 5.06873 5.20912 5.28834 5.36406 5.44759 5.47599 5.48207 5.57497 5.63029 5.65239 5.72916 5.79331 5.82579 5.91380 5.94562 5.98780 6.13897 6.27546 6.34168 6.41425 6.45355 6.50436 6.93005 6.96867 7.38262 7.54965 7.73680 8.15076 8.46013 9.56726 10.16228 10.50814 11.49696 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012922 B = 0.001812 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.341709 B =15452.415787 C =16617.863145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C 0.059 3.941 4 N -0.444 5.444 5 C 0.092 3.908 6 C -0.070 4.070 7 C 0.518 3.482 8 O -0.523 6.523 9 N -0.725 5.725 10 C 0.142 3.858 11 H 0.087 0.913 12 C -0.162 4.162 13 C -0.126 4.126 14 C -0.113 4.113 15 C -0.125 4.125 16 C 0.152 3.848 17 N -0.735 5.735 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.017 4.017 21 N -0.935 5.935 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.260 4.260 27 S 0.105 5.895 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.400 0.600 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.017 0.983 46 H 0.016 0.984 47 H 0.383 0.617 48 H 0.254 0.746 49 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.474 -0.029 -32.838 33.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.088 4.088 3 C -0.221 4.221 4 N -0.157 5.157 5 C -0.041 4.041 6 C -0.112 4.112 7 C 0.303 3.697 8 O -0.397 6.397 9 N -0.378 5.378 10 C 0.038 3.962 11 H 0.106 0.894 12 C -0.220 4.220 13 C -0.164 4.164 14 C -0.152 4.152 15 C -0.163 4.163 16 C 0.025 3.975 17 N -0.379 5.379 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.213 4.213 21 N -0.584 5.584 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.399 4.399 27 S 0.360 5.640 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.234 0.766 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.216 0.784 48 H 0.064 0.936 49 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -8.276 -1.070 -33.556 34.577 hybrid contribution 1.195 0.663 1.567 2.079 sum -7.080 -0.406 -31.989 32.766 Atomic orbital electron populations 1.21764 0.93343 1.02515 1.02921 1.20235 0.96923 0.87473 1.04188 1.27085 1.02753 1.01742 0.90470 1.65986 1.13000 1.05535 1.31191 1.19542 1.00240 0.91366 0.92966 1.20262 0.98322 0.99061 0.93601 1.20233 0.89236 0.78759 0.81432 1.90727 1.32231 1.44202 1.72586 1.46082 1.17170 1.49108 1.25434 1.21006 0.86386 0.99974 0.88821 0.89446 1.22168 0.99472 0.98664 1.01734 1.21933 1.00951 0.99333 0.94204 1.21512 0.99317 0.97813 0.96516 1.21726 1.00006 0.99549 0.95042 1.20652 0.94793 0.94750 0.87348 1.42404 1.61721 1.20999 1.12791 1.19308 1.23028 0.98213 0.96256 0.91172 1.24754 1.01574 0.97372 0.97597 1.69672 1.50388 1.21584 1.16748 0.86105 0.79896 0.80076 0.80080 1.20558 1.21879 1.21873 1.26728 1.13128 1.04396 0.95697 1.83888 1.60919 1.05840 1.13321 0.92557 0.91404 0.91541 0.89774 0.88650 0.87320 0.86934 0.76595 0.91615 0.92444 0.92540 0.91382 0.90312 0.92016 0.92110 0.92152 0.92097 0.96563 0.96616 0.78363 0.93618 0.80629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.89 37.16 0.37 -0.70 16 2 C -0.05 -0.35 6.52 -27.88 -0.18 -0.54 16 3 C 0.06 0.59 6.64 -13.46 -0.09 0.50 16 4 N -0.44 -5.52 9.68 -8.06 -0.08 -5.60 16 5 C 0.09 0.96 5.64 -84.23 -0.47 0.49 16 6 C -0.07 -0.58 6.19 -29.03 -0.18 -0.76 16 7 C 0.52 5.79 7.76 -10.98 -0.09 5.70 16 8 O -0.52 -8.07 15.11 5.56 0.08 -7.98 16 9 N -0.73 -6.64 4.53 -53.80 -0.24 -6.89 16 10 C 0.14 1.44 2.58 -67.93 -0.17 1.26 16 11 H 0.09 1.09 7.58 -51.93 -0.39 0.69 16 12 C -0.16 -1.48 9.48 37.16 0.35 -1.12 16 13 C -0.13 -1.26 4.75 -26.73 -0.13 -1.39 16 14 C -0.11 -1.43 5.10 -26.73 -0.14 -1.57 16 15 C -0.13 -2.02 5.33 -26.73 -0.14 -2.16 16 16 C 0.15 3.18 6.26 -4.04 -0.03 3.16 16 17 N -0.74 -19.42 5.60 -59.91 -0.34 -19.75 16 18 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 19 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 20 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16 21 N -0.93 -28.89 13.06 55.49 0.72 -28.17 16 22 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 C -0.26 -2.18 11.07 29.12 0.32 -1.86 16 27 S 0.10 0.83 23.18 -107.50 -2.49 -1.66 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.11 0.53 8.03 -51.93 -0.42 0.11 16 34 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.40 2.70 8.60 -40.82 -0.35 2.35 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.75 7.75 -51.93 -0.40 0.34 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.38 10.52 7.67 -40.82 -0.31 10.21 16 48 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 49 H 0.18 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 418.83 15.07 6.31 6.31 Total: -1.00 -36.26 418.83 -10.48 -46.74 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -8.61 Total: 5.75 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -0.82 Total: -6.61 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: 0.07 Total: -60.41 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: 0.08 Total: -7.98 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.49 Total: -1.66 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -36.26 -10.48 -46.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176746923.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.380 kcal (2) G-P(sol) polarization free energy of solvation -36.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds